Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy4g0845 ATGACGCTTTACGAACAGAATCCGGAGGAGTCTCGCAAAGGTTTGGAAGGTCAGGATCTGTATGAGGAACTGTGGAAGGCATGTGCAGGGCCTCTTGTTGAAGTTCCTGTCAATGGAGAAAGGGTTTTTTACTTCCCTCAGGGTCACATGGAACAATTGGAAGAGTCAACAAATCAGGAGCTGAATCACCAAATCCCTCATTTTGATCTCCCTCCCAAGATCCTCTGTCGTGTCGTTAACATTCGTTTGTTGGCTGAAAAGGAAACAGATGAAGTCTATGCTCAAATCACTTTATACCCAGAAGCTGATCAAAGTGAGCCGCAAAGCCCTGATCCAGAGCCGCCTGTGCGTACAAGGCAAACTGTTCATTCTTTTTGTAAGATTTTGACTGCTTCTGATACTAGCACTCATGGAGGCTTCTCAGTTCTTAGAAAACATGCCACTGAATGCCTTCCTCCCCTTGATATGAGTCAATCCACCCCAACTCAGGAGCTAGCTGCCAAGGATCTTCATGGATATGAGTGGAAATTTAAGCATATTTTCAGAGGTCAACCACGGAGGCATTTGCTAACCACAGGGTGGAGTACGTTTGTTACATCGAAACGGCTGGTTGCTGGCGATGCATTTGTTTTCTTAAGGGGTGACAATGGGGAACTGAGGGTCGGTGTTCGGCGGCAGGCTCGGCAGCAGTGTATGATGCCTTCCTCTGTTATATCTAGCCATAGTATGCATCTTGGAGTTCTTGCCACTGCTTCTCATGCTGTTCGTACGCAGACCTATTTTGTTGTGTATTACAAGCCAAGAACTAGCCAATTCATCATCAGCTTAAACAAATACTTGGAAACAGTTAAAAATGGATTTGAAGTGGGGATGCGCTTCAAAATGAGATTTGAAGGAGAGGAATCCCCAGAGAGAAGGTTCACTGGAACTATTGTTGGTGTTGGAGATATATCTCCGCAATGGTCGGATTCTAAATGGCGATCGCTGAAGATTCAATGGGATGAACCTGCTATGATTCAGAGGCCGGAACGAGTTTCTCCATGGGAGATCGAACCCTTTGTACCTTCTGCCTCCTTAAACTTCACTCATCCCGCCATGAAGAGTAAGAGGGCCCGACCCACTGAGATTCCTCCTACCGAAATTACTCCCAGTTCGGCTCCTTCGAGCTTTTGGATTCACGGATCAACAACTACTCACGAGATAAGTGGTGCAAATGAAGTTCAAAGCAGTGATAACCAGGTTGTCTGGGCTCTCGGGCAGCGAAAACTCGATAGCAATGTTGATAGCAGCAATAGCAGCCACTGTAATCCAATAGCACATGTTGAAGGCATTTGGCCTTCTCCTCCACTCCTTAATTTTTCCCTGAAGCTCTACCCAGATTCAACATGTGAAAGAGAACTTGTTCCTAAACAGCCTCTTCCCTCTCCTTATTCTCCATCTGTTACTTCAAAGTCTAGCAGCGACCTCATTCAGCATGATCAGTTGGAGAAAGGGAATAAGACCGACATTTCTCTCGGCTGCAGAATATTTGGAATCAATTTGAAAACCAACTCTAGCATTGTCTCTTCCTCGGAGAAAAAACCGTCTTGCACAACTTCGGTAGCTGATGGTGCCAAAGATTCAGTAGCTGCAGCTGCTACAACATCTCAAGTCGATGCTGGAAACCTGTCACAGCCTTCAAAGGAGCAGCCACAACCACAAGTCGCATCGGAGCTGTCGACGAAAGGAACACAGACAAAGCATGTTTCCAATCTATCATCGAGAACACGTACAAAGGTACAAATGCAAGGAGTTGCTGTAGGTCGAGCGGTCGACTTGACAACACTTGAAGGGTACGAAGATCTGATAGACGAGCTGGAGAATGTGTTTGAAATAAAAGGACAACTTCGTGAAATGAACAAATGGGCTGTTGTTTTCACAGACGACGAAAACGACATGATGCTTGTGGGGGACGATCCATGGCCGGAGTTCTGTAAGATGGTGAAGAGGATCTTTATATATTCAAGTGAAGAAGTGAAGAAGATGAGCAATAAAAGCAAGCTTGTTTCCCCATCATCCTTAGATAGCTTGGATTCAGAGCGCAAGACTGAATCTTAA 2097 45.54 MTLYEQNPEESRKGLEGQDLYEELWKACAGPLVEVPVNGERVFYFPQGHMEQLEESTNQELNHQIPHFDLPPKILCRVVNIRLLAEKETDEVYAQITLYPEADQSEPQSPDPEPPVRTRQTVHSFCKILTASDTSTHGGFSVLRKHATECLPPLDMSQSTPTQELAAKDLHGYEWKFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDAFVFLRGDNGELRVGVRRQARQQCMMPSSVISSHSMHLGVLATASHAVRTQTYFVVYYKPRTSQFIISLNKYLETVKNGFEVGMRFKMRFEGEESPERRFTGTIVGVGDISPQWSDSKWRSLKIQWDEPAMIQRPERVSPWEIEPFVPSASLNFTHPAMKSKRARPTEIPPTEITPSSAPSSFWIHGSTTTHEISGANEVQSSDNQVVWALGQRKLDSNVDSSNSSHCNPIAHVEGIWPSPPLLNFSLKLYPDSTCERELVPKQPLPSPYSPSVTSKSSSDLIQHDQLEKGNKTDISLGCRIFGINLKTNSSIVSSSEKKPSCTTSVADGAKDSVAAAATTSQVDAGNLSQPSKEQPQPQVASELSTKGTQTKHVSNLSSRTRTKVQMQGVAVGRAVDLTTLEGYEDLIDELENVFEIKGQLREMNKWAVVFTDDENDMMLVGDDPWPEFCKMVKRIFIYSSEEVKKMSNKSKLVSPSSLDSLDSERKTES 698
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 11328680 11333021 - Maker00034490 Lcy4g0845 630371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy4g0845 698 MobiDBLite consensus disorder prediction 99 118 - -
Lcy4g0845 698 CDD B3_DNA 123 225 IPR003340 GO:0003677(InterPro)
Lcy4g0845 698 Gene3D - 584 676 - -
Lcy4g0845 698 SUPERFAMILY DNA-binding pseudobarrel domain 118 254 IPR015300 -
Lcy4g0845 698 FunFam Auxin response factor 583 676 - -
Lcy4g0845 698 MobiDBLite consensus disorder prediction 365 389 - -
Lcy4g0845 698 MobiDBLite consensus disorder prediction 549 591 - -
Lcy4g0845 698 FunFam Auxin response factor 286 357 - -
Lcy4g0845 698 Pfam B3 DNA binding domain 125 226 IPR003340 GO:0003677(InterPro)
Lcy4g0845 698 Gene3D - 122 227 IPR015300 -
Lcy4g0845 698 Gene3D - 287 358 - -
Lcy4g0845 698 ProSiteProfiles PB1 domain profile. 588 680 IPR053793 -
Lcy4g0845 698 ProSiteProfiles B3 DNA-binding domain profile. 125 227 IPR003340 GO:0003677(InterPro)
Lcy4g0845 698 MobiDBLite consensus disorder prediction 674 698 - -
Lcy4g0845 698 FunFam Auxin response factor 123 227 - -
Lcy4g0845 698 Pfam Auxin response factor 251 330 IPR010525 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Lcy4g0845 698 Pfam AUX/IAA family 580 673 IPR033389 -
Lcy4g0845 698 SMART B3_2 125 227 IPR003340 GO:0003677(InterPro)
Lcy4g0845 698 SUPERFAMILY CAD & PB1 domains 583 664 - -
Lcy4g0845 698 MobiDBLite consensus disorder prediction 467 489 - -
Lcy4g0845 698 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 19 678 IPR044835 GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy4g0845 Lcy-Chr4:11328680 Lcy7g1941 Lcy-Chr7:45650767 4.78E-144 dispersed
Lcy12g1556 Lcy-Chr12:35503175 Lcy4g0845 Lcy-Chr4:11328680 9.34E-250 transposed
Lcy1g0307 Lcy-Chr1:2729074 Lcy4g0845 Lcy-Chr4:11328680 5.26E-105 transposed
Lcy2g0013 Lcy-Chr2:133246 Lcy4g0845 Lcy-Chr4:11328680 5.24E-187 transposed
Lcy6g0783 Lcy-Chr6:7804027 Lcy4g0845 Lcy-Chr4:11328680 9.24E-256 transposed
Lcy8g1889 Lcy-Chr8:45166309 Lcy4g0845 Lcy-Chr4:11328680 1.31E-110 transposed
Lcy4g0845 Lcy-Chr4:11328680 Lcy4g1586 Lcy-Chr4:39949846 6.27E-105 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19972 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy4g0845 K14486 - csv:101205805 1187.94