Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy4g0942 ATGACCACAAACTCCCACCATTCTCACCCAACCACCACCACCTCCTCCTCCTCCGCCGCCTCCTCTTCCTCCGCCTCTTCGGGTGGAAACGCCCGAAAGAGGCAGAGGAGCGCCCCAACAAGCAGCACCGAGAGCGAGAGCGAATCGTCTCACTCGACAACGACCAAGTATCGAGGAGTTCGCCTAAGGGCATGGGGCAAATGGGTGTCCGAAATAAGAGAGCCAAGAAAGAAGTCTAGGATATGGCTAGGCACATATCCGACCGCCGAGATGGCGGCACGTGCACACGACGTCGCTGCACTTGCCATCAAAGGGCGTGGTGCGTTCCTCAACTTCCCCGAACTCAAACACCAACTCCCCCGTCCCGCGTCCCTCTCCGCCAAGGACATCCAGTCGGCCGCCGCACAGGCTGCCGCCGTGGAAGTACCAATAGCAGATCGGGATGAGGAGTTGAGCCAATCCGAAACGACGACGACGTCGTCGGTGGAAGAGACATGGTTTGATTTACCGGATCTTGTGGTAGAAGGGAGCGATGGGTTGTTGTTGGGTTATGATTATTCTTCTTGTTGTTCATCGCCATGGCAGTTTGGTGAAGATCAGGAGCTCCAATGGCACTGGGATTATTCTCATACTATTTTTCCTGGTTGA 648 55.71 MTTNSHHSHPTTTTSSSSAASSSSASSGGNARKRQRSAPTSSTESESESSHSTTTKYRGVRLRAWGKWVSEIREPRKKSRIWLGTYPTAEMAARAHDVAALAIKGRGAFLNFPELKHQLPRPASLSAKDIQSAAAQAAAVEVPIADRDEELSQSETTTTSSVEETWFDLPDLVVEGSDGLLLGYDYSSCCSSPWQFGEDQELQWHWDYSHTIFPG 215
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 15461480 15462127 + Maker00034606 Lcy4g0942 630468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy4g0942 215 ProSiteProfiles AP2/ERF domain profile. 56 113 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy4g0942 215 Pfam AP2 domain 55 105 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy4g0942 215 SMART rav1_2 56 119 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy4g0942 215 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 41 161 IPR051032 -
Lcy4g0942 215 Gene3D AP2/ERF domain 55 114 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy4g0942 215 PRINTS Ethylene responsive element binding protein signature 57 68 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy4g0942 215 PRINTS Ethylene responsive element binding protein signature 79 95 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy4g0942 215 FunFam Ethylene-responsive transcription factor 2 55 114 - -
Lcy4g0942 215 CDD AP2 56 115 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy4g0942 215 SUPERFAMILY DNA-binding domain 56 113 IPR016177 GO:0003677(InterPro)
Lcy4g0942 215 MobiDBLite consensus disorder prediction 1 56 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy4g0942 Lcy-Chr4:15461480 Lcy9g1625 Lcy-Chr9:41392249 8.81E-40 dispersed
Lcy11g2103 Lcy-Chr11:44497811 Lcy4g0942 Lcy-Chr4:15461480 7.40E-43 transposed
Lcy12g1080 Lcy-Chr12:19290110 Lcy4g0942 Lcy-Chr4:15461480 2.04E-31 wgd
Lcy4g0942 Lcy-Chr4:15461480 Lcy9g0379 Lcy-Chr9:10585394 1.17E-24 wgd
Lcy4g0942 Lcy-Chr4:15461480 Lcy9g0177 Lcy-Chr9:4107878 9.15E-28 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19976 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy4g0942 - - - 0.0