Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy4g1005 ATGGAATTTCTCACAAAATCAAAGGAAGAAGTAGAAGAAGATCAAGACGAGGAAGAAGAGGAAGAAATCCCCACTCTTGCATGCGATTTCTTCTCAAATTCCCACTCTCACAACCTTCAACAACAGCACCAGCATCACCAGCACCAATGGCTTGAAGAGACTCCAAATCAGCAGCCTGTGATGGACTTATCCCTGAGAATGGACACCAACAACGGCAGTGACAGCAATAATAATAATAATAATGGGTTTGCGGCGGTGGAGAGAGAGCACATGTTCGACAAAGTGGTCACCCCAAGCGATGTGGGAAAATTGAACCGTTTAGTCATCCCAAAGCAACACGCAGAGAAATACTTCCCCTTGGACTCCACCACCAACGACAAGGGCCTCATCTTGAACTTCGAGGACCGTAACGGAAAACCCTGGCGCTTCCGTTACTCCTACTGGAACAGCAGCCAAAGCTACGTCATGACCAAAGGCTGGAGCCGTTTCGTCAAGGACAAGAAGCTCGACGCCGGCGACGTCGTCTCCTTCCAGCGTGGCGTCGGCGATTCCGCCAAGGACCGCCTCTTCATCGACTGGCGCCGCCGCCCCGACGCCCCTCGCCCTCTCCACCACTTCTCCAACCCTCTCCTCCTCCTCCCTCAGTCCCTCCGCTGGGCCTCCTCCCGCCACTACACTCTCCCCCCGCCGCCTCCGCCACCGCCCAGACGAACCCACCACCCACTCCACAACTACTCCAATCTCTATCCCAATTACGCCTTTGAAATGCCCAATTTGGGGGCGGGTGCCAACAGTAATCATCATAATTCTTCCATGTATTATTTTCGACCCTCCATTTCGTCTTCTTCTTCCTCTTCTCTTTATAGAGTGGGAAATGGGGATGGGGTCGTGGTTCATAATGAAGGCTCTTCAATGGGGATGAACAAAGCCGGCTCCACGGCGGCGAAACGGCTGCGGCTGTTTGGAGTGAACATGGAGTGTGCTGCAGCGGATGGAGACGGAGGAGAAGGAGAAGAGGATCTGTCAAACGGAGGCGTTTCGAGGAGAGGGAAAGAGCCCTTGTCGTTGAATTGGGATTTACTTTAA 1086 53.04 MEFLTKSKEEVEEDQDEEEEEEIPTLACDFFSNSHSHNLQQQHQHHQHQWLEETPNQQPVMDLSLRMDTNNGSDSNNNNNNGFAAVEREHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLDSTTNDKGLILNFEDRNGKPWRFRYSYWNSSQSYVMTKGWSRFVKDKKLDAGDVVSFQRGVGDSAKDRLFIDWRRRPDAPRPLHHFSNPLLLLPQSLRWASSRHYTLPPPPPPPPRRTHHPLHNYSNLYPNYAFEMPNLGAGANSNHHNSSMYYFRPSISSSSSSSLYRVGNGDGVVVHNEGSSMGMNKAGSTAAKRLRLFGVNMECAAADGDGGEGEEDLSNGGVSRRGKEPLSLNWDLL 361
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 17636659 17637744 - Maker00024231 Lcy4g1005 630531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy4g1005 361 Gene3D - 85 207 IPR015300 -
Lcy4g1005 361 MobiDBLite consensus disorder prediction 329 361 - -
Lcy4g1005 361 ProSiteProfiles B3 DNA-binding domain profile. 92 197 IPR003340 GO:0003677(InterPro)
Lcy4g1005 361 CDD B3_DNA 90 179 IPR003340 GO:0003677(InterPro)
Lcy4g1005 361 SMART B3_2 92 197 IPR003340 GO:0003677(InterPro)
Lcy4g1005 361 MobiDBLite consensus disorder prediction 1 23 - -
Lcy4g1005 361 SUPERFAMILY DNA-binding pseudobarrel domain 89 196 IPR015300 -
Lcy4g1005 361 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 27 325 IPR044800 GO:0003700(InterPro)
Lcy4g1005 361 Coils Coil 1 21 - -
Lcy4g1005 361 Pfam B3 DNA binding domain 92 196 IPR003340 GO:0003677(InterPro)
Lcy4g1005 361 FunFam B3 domain-containing protein 85 206 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g1482 Lcy-Chr12:33788159 Lcy4g1005 Lcy-Chr4:17636659 1.33E-72 dispersed
Lcy4g1005 Lcy-Chr4:17636659 Lcy6g0876 Lcy-Chr6:8911119 3.63E-68 dispersed
Lcy10g0904 Lcy-Chr10:28501189 Lcy4g1005 Lcy-Chr4:17636659 5.64E-43 wgd
Lcy10g0904 Lcy-Chr10:28501189 Lcy4g1005 Lcy-Chr4:17636659 5.64E-43 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19978 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy4g1005 K09287 - csv:101221141 374.785