Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lcy4g1060 | ATGTCGTTGAGTAGTGAGATTGAAAGCCTCTGGGTTTTCGCCTTGGCTTCCAAATGCTCCGCTCTCACCAAACAAAACCTCCTTTGCTCTCTACTCTTCCTTTTCCTAATTTGGTTTCTCCTTTCTATTTTCAATTGGGCCCATCCTGGCGGTCCTGCTTGGGGCCGTCACTCGCCTCACCGAAATTCCTCCGCCGCCACCGCCCCCATCATTCCTGGGCCTAGAGGCCTCCCCGTCCTTGGAAGCATGAGCCTGATGACGGGCCTGGCCCACCAACGAATCGCGGCCATGGCCAAATCCCTAGGCGCCACCCGCCTCATGGCCTTCTCACTCGCCAACACTCGCGTCATCGTCACATGCAACCCGGACGTGGCCAAAGAGATCCTCAACAGCTCGGTGTTCGCGGACCGTCCGATCAAGGAATCCGCTTACTCGTTGATGTTCAATCGCGCCATTGGATTCGCCCCTTACGGCGTCTATTGGCGGACCCTTCGACGTATCGCTTCACACCACCTCTTCTGCCCCAAACAAATCAAATCCTCCGAGTCCCAACGCCGCCGAATCGCTTCCCAAATGGTCACAATGTTCTCCTTCTCCAACACGACCTCGTCCCACCAAGTTCGTGACACTCTCAAAAGAGCCTCTTTGAACCACATGATGGGCTCAGTCTTCGGCCGCTTCTACAACCTCTCAGACTCCAACAACGAAGTCGACCACCTCAAAGACCTCGTCGATGAAGGCTACGACTTATTGGGCCTTCTCAACTGGTCCGACCATCTCCCCTTCTTAGCCGACTTCGACCCACAAAGAATCCGCTTCAGATGCTCCCGCTTGGTCCCCAAAGTGAACCGCTTCGTCGCCACCATCATCGCCGACCACCGCTCCAAACCAACCCAACAGACCATGGATTTCGTCGACCTTCTTCTCTCTCTTCAACAAACAGACAAACTCTCTGACTCCGATATGATCGCCGTTCTTTGGGAAATGATATTCAGAGGGACAGACACGGTGGCGGTTTTGATAGAGTGGATTCTGGCGAGGATGGTGGTTCACAAGGACGAGCAGGAAAAGGTTCAAGAGGAATTAGATAAGGTTGTTGGTACATCACGCGCCGTCGTGGAGTCCGACATTCCGTCCTTGGTTTATCTAACGGCGGTGGTTAAGGAAGTTCTCAGGTTGCACCCGCCGGGCCCACTTCTGTCGTGGGCCCGCCTCGCCATCACTGATACAATCGTCGATGGCCATCACGTGCCTCGCGGGACCACCGCTATGGTTAACATGTGGTCGATAGCGCGGGACCCACAGGTCTGGTCGGACCCACTCCAGTTTATGCCCCAGAGGTTTGTGTCCGGTTCCGGTGCTGGTGCTGATGTGGAGTTTTCTGTTATGGGTTCGGACCTCCGGTTGGCTCCGTTCGGGTCGGGTCGCAGGACTTGCCCCGGGAAGGCACTCGCTTGGACAACTGTCACCTTCTGGGTGGCTACTCTTTTACACGAATTTAAATGGCTGCCTTCATCGGACCAAAACGACGCCGTCGACTTCTCTGAAAATCTCAAGCTCTCTTGTGAGATGGCCAATCCGCTCACCGTTAAACTATGCCCAAGGCGCTAA | 1611 | 55.0 | MSLSSEIESLWVFALASKCSALTKQNLLCSLLFLFLIWFLLSIFNWAHPGGPAWGRHSPHRNSSAATAPIIPGPRGLPVLGSMSLMTGLAHQRIAAMAKSLGATRLMAFSLANTRVIVTCNPDVAKEILNSSVFADRPIKESAYSLMFNRAIGFAPYGVYWRTLRRIASHHLFCPKQIKSSESQRRRIASQMVTMFSFSNTTSSHQVRDTLKRASLNHMMGSVFGRFYNLSDSNNEVDHLKDLVDEGYDLLGLLNWSDHLPFLADFDPQRIRFRCSRLVPKVNRFVATIIADHRSKPTQQTMDFVDLLLSLQQTDKLSDSDMIAVLWEMIFRGTDTVAVLIEWILARMVVHKDEQEKVQEELDKVVGTSRAVVESDIPSLVYLTAVVKEVLRLHPPGPLLSWARLAITDTIVDGHHVPRGTTAMVNMWSIARDPQVWSDPLQFMPQRFVSGSGAGADVEFSVMGSDLRLAPFGSGRRTCPGKALAWTTVTFWVATLLHEFKWLPSSDQNDAVDFSENLKLSCEMANPLTVKLCPRR | 536 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 19586633 | 19588987 | - | Maker00024305 | Lcy4g1060 | 630586 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lcy4g1060 | 536 | CDD | CYP78 | 102 | 528 | - | - | |
| Lcy4g1060 | 536 | Gene3D | Cytochrome P450 | 57 | 532 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy4g1060 | 536 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 472 | 481 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) | |
| Lcy4g1060 | 536 | PRINTS | E-class P450 group I signature | 341 | 367 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy4g1060 | 536 | PRINTS | E-class P450 group I signature | 321 | 338 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy4g1060 | 536 | PRINTS | E-class P450 group I signature | 469 | 479 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy4g1060 | 536 | PRINTS | E-class P450 group I signature | 479 | 502 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy4g1060 | 536 | PRINTS | E-class P450 group I signature | 214 | 232 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy4g1060 | 536 | PRINTS | E-class P450 group I signature | 384 | 402 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy4g1060 | 536 | PRINTS | E-class P450 group I signature | 426 | 450 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy4g1060 | 536 | PRINTS | P450 superfamily signature | 479 | 490 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy4g1060 | 536 | PRINTS | P450 superfamily signature | 332 | 349 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy4g1060 | 536 | PRINTS | P450 superfamily signature | 470 | 479 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy4g1060 | 536 | PRINTS | P450 superfamily signature | 385 | 396 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy4g1060 | 536 | SUPERFAMILY | Cytochrome P450 | 71 | 535 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy4g1060 | 536 | PANTHER | CYTOCHROME P450 78A7-RELATED | 5 | 531 | IPR051996 | - | |
| Lcy4g1060 | 536 | Pfam | Cytochrome P450 | 72 | 509 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy4g1060 | 536 | FunFam | Cytochrome P450 78A5 | 63 | 535 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lcy4g1060 | Lcy-Chr4:19586633 | Lcy5g2475 | Lcy-Chr5:47499117 | 8.58E-168 | dispersed | |
| Lcy1g1999 | Lcy-Chr1:25181923 | Lcy4g1060 | Lcy-Chr4:19586633 | 1.79E-53 | wgd | |
| Lcy4g1060 | Lcy-Chr4:19586633 | Lcy5g0828 | Lcy-Chr5:13116027 | 6.49E-67 | wgd | |
| Lcy4g1060 | Lcy-Chr4:19586633 | Lcy8g0971 | Lcy-Chr8:34286358 | 6.60E-39 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lcy4g1060 | K20619 | - | csv:101216159 | 864.374 |