Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy4g1146 ATGGGGAAGAAGGGAGCTACCTCATGGTTGACCGCCGTCAAAAGGGCCTTCAGATCTCCCTCTAAAGATGATGATGAAAAGAGGAGAGAGAAACGCCGCTGGATTTTCAGAAAGCCAACCAATCACCATCAACAACCACCGCCCACTGATTCCGTAGCTTTACAAGACCACAAACATGCCCTTGCGCTGGCTGAAGCAGCCATGGCCGCCGCCAGAGCCGCTCAACAAGCTGTCCACCTCACCCACCCTGCCCGTCCCGGATTGGATCGCCATCCCCATGCCGCCACTGTCATTCAAACGGCCTTTAGAGGATATTTGGCAAGGAGGGCTCTACGGGCACTAAAAGGGTTGGTGAAGTTGCAAGCATTGGTGAGAGGACACAATGTGAGGAAGCAGGCGAAGACGACGCTGCAGTGCATGAAGGCATTAGTGAGAGTGCAAGAACAAGTGCTAGATCATCGGATGAGACTCTCCCTCGAAGGCAGTCGACGATCTACCTTCAGCGACACGAACAGCGTCTACGAAAATCGCTATGTTCAAGACGTTTCCGAAAGGAAGACTATTTGTCTATCAAGAGAAGGAAGCAACATTACAGACGATTGGGATGAACGTCCTCACACAGTTGAAGAAGTTAAGGCAATGTTGCAGCACAGAAGAGATGCTGCTTTGAATCGTGACAGCGTTTTATCTCACTCCTTTTCTCAACAGATATGGAGGACCGGAAAGAGCCCATCAATAGGAAACCAAACAGAGCTTGAAGAAGGACCAAAATGGCTTGACCAGTGGATGGCGAAGAAGCCATGGGAGAGCAGGGCAAGAGCTTCCATAGATCACAGACCACAGCCCCTTAAAACTCTCGAAATCGATACCTCTCGACCATACTCTTACTTATCTCCCAACAATCTCCACACAACGAATTATCAAACTCAATCACAAAGATCCAACTCGCTCTCTTCCTCCTCCCCACTCCACATAGCCCAGCATCACCAGTTCCCTGTCACCCCATCCCCGTCGAAATCCCGCCCGGTCCAACAAGTCCGGTCGGCGAGTCCCCGCTGCAGCAGAGAAGATAGAAACCAAATCAGCCACCACCACATTACATCTCAAACGCCAAGCTTGAGGTCCAAGCATCAACAACATCACAGTGGGGGAGGTGGAGGGACTTCATTGCCTAATTACATGGCGGCAACAGAGTCAGCCAAGGCCCGAGTGCGATCGCAAAGTGCACCGAGGCAAAGGCCAGCAACCCCGGAGAGGGAACGAGTAGGGACGGCGAGGAAGCGGCTTTCGTTTCCGGTACCACCAGATCCTTACAGTAGAATGGTGGGGTGTGGAATGTATGGGAATAACATGAAGAGCCCGAGTTTTAAGAGTGTTTGTGGAAGGTATGGGAGGTTGGAGGAACGGTCTAACTATTCTTCTTGCTATACGGAGAGCCATGGAGGAGAGGTTTCTCCTTCTTCAACCACTGACCTCAGGAGGTGGTTGAGATGA 1494 51.41 MGKKGATSWLTAVKRAFRSPSKDDDEKRREKRRWIFRKPTNHHQQPPPTDSVALQDHKHALALAEAAMAAARAAQQAVHLTHPARPGLDRHPHAATVIQTAFRGYLARRALRALKGLVKLQALVRGHNVRKQAKTTLQCMKALVRVQEQVLDHRMRLSLEGSRRSTFSDTNSVYENRYVQDVSERKTICLSREGSNITDDWDERPHTVEEVKAMLQHRRDAALNRDSVLSHSFSQQIWRTGKSPSIGNQTELEEGPKWLDQWMAKKPWESRARASIDHRPQPLKTLEIDTSRPYSYLSPNNLHTTNYQTQSQRSNSLSSSSPLHIAQHHQFPVTPSPSKSRPVQQVRSASPRCSREDRNQISHHHITSQTPSLRSKHQQHHSGGGGGTSLPNYMAATESAKARVRSQSAPRQRPATPERERVGTARKRLSFPVPPDPYSRMVGCGMYGNNMKSPSFKSVCGRYGRLEERSNYSSCYTESHGGEVSPSSTTDLRRWLR 497
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 23782856 23786241 - Maker00035190 Lcy4g1146 630672

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy4g1146 497 MobiDBLite consensus disorder prediction 17 32 - -
Lcy4g1146 497 FunFam IQ-domain 11 90 141 - -
Lcy4g1146 497 PANTHER IQ-DOMAIN 5-RELATED 9 426 - -
Lcy4g1146 497 Gene3D - 88 145 - -
Lcy4g1146 497 SMART iq_5 90 112 IPR000048 GO:0005515(InterPro)
Lcy4g1146 497 SMART iq_5 113 134 IPR000048 GO:0005515(InterPro)
Lcy4g1146 497 MobiDBLite consensus disorder prediction 474 497 - -
Lcy4g1146 497 MobiDBLite consensus disorder prediction 1 51 - -
Lcy4g1146 497 MobiDBLite consensus disorder prediction 364 386 - -
Lcy4g1146 497 Pfam IQ calmodulin-binding motif 118 134 IPR000048 GO:0005515(InterPro)
Lcy4g1146 497 Pfam IQ calmodulin-binding motif 94 112 IPR000048 GO:0005515(InterPro)
Lcy4g1146 497 MobiDBLite consensus disorder prediction 291 350 - -
Lcy4g1146 497 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 76 136 IPR027417 -
Lcy4g1146 497 MobiDBLite consensus disorder prediction 282 423 - -
Lcy4g1146 497 ProSiteProfiles IQ motif profile. 91 119 - -
Lcy4g1146 497 Pfam Protein of unknown function (DUF4005) 350 457 IPR025064 -
Lcy4g1146 497 ProSiteProfiles IQ motif profile. 115 142 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy4g1146 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g0136 Lcy-Chr12:1698349 Lcy4g1146 Lcy-Chr4:23782856 8.55E-12 dispersed
Lcy4g1146 Lcy-Chr4:23782856 Lcy9g1966 Lcy-Chr9:44620560 1.43E-21 dispersed
Lcy11g2121 Lcy-Chr11:44727359 Lcy4g1146 Lcy-Chr4:23782856 6.56E-152 transposed
Lcy11g0566 Lcy-Chr11:13848553 Lcy4g1146 Lcy-Chr4:23782856 1.60E-07 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy10g1784 . 30 510 IQD Protein Family AT3G52290 54.2 2.7e-102 369.8
Lcy2g1354 . 355 748 IQD Protein Family AT3G22190 58.1 3.0e-93 339.7
Lcy9g1966 . 1 437 IQD Protein Family AT2G26180 60.1 2.0e-118 423.3
Lcy1g0290 . 36 325 IQD Protein Family AT2G33990 51.0 5.3e-64 241.9
Lcy6g0627 . 84 271 IQD Protein Family AT2G33990 57.1 2.1e-52 203.4
Lcy1g0290 . 107 299 IQD Protein Family AT3G15050 57.5 1.8e-56 216.9
Lcy6g0627 . 91 278 IQD Protein Family AT3G15050 60.9 3.4e-55 212.6
Lcy10g1012 . 95 442 IQD Protein Family AT5G13460 52.5 1.7e-75 280.8
Lcy11g2121 . 1 534 IQD Protein Family AT4G00820 54.2 1.9e-129 460.3
Lcy4g1146 . 90 498 IQD Protein Family AT4G00820 57.1 1.7e-106 384.0
Lcy11g2121 . 1 534 IQD Protein Family AT1G01110 50.9 1.2e-123 441.0
Lcy3g2162 . 1 395 IQD Protein Family AT3G16490 52.1 1.2e-72 271.2
Lcy2g0871 . 1 395 IQD Protein Family AT3G16490 51.6 3.1e-68 256.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002938 1 3 2 3 3 1 2 1 1 1 1 1 2 2 2 2 1 3 2 2 2 2 2 2 2 1 1 1 2 3 54