Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy4g1146 ATGGGGAAGAAGGGAGCTACCTCATGGTTGACCGCCGTCAAAAGGGCCTTCAGATCTCCCTCTAAAGATGATGATGAAAAGAGGAGAGAGAAACGCCGCTGGATTTTCAGAAAGCCAACCAATCACCATCAACAACCACCGCCCACTGATTCCGTAGCTTTACAAGACCACAAACATGCCCTTGCGCTGGCTGAAGCAGCCATGGCCGCCGCCAGAGCCGCTCAACAAGCTGTCCACCTCACCCACCCTGCCCGTCCCGGATTGGATCGCCATCCCCATGCCGCCACTGTCATTCAAACGGCCTTTAGAGGATATTTGGCAAGGAGGGCTCTACGGGCACTAAAAGGGTTGGTGAAGTTGCAAGCATTGGTGAGAGGACACAATGTGAGGAAGCAGGCGAAGACGACGCTGCAGTGCATGAAGGCATTAGTGAGAGTGCAAGAACAAGTGCTAGATCATCGGATGAGACTCTCCCTCGAAGGCAGTCGACGATCTACCTTCAGCGACACGAACAGCGTCTACGAAAATCGCTATGTTCAAGACGTTTCCGAAAGGAAGACTATTTGTCTATCAAGAGAAGGAAGCAACATTACAGACGATTGGGATGAACGTCCTCACACAGTTGAAGAAGTTAAGGCAATGTTGCAGCACAGAAGAGATGCTGCTTTGAATCGTGACAGCGTTTTATCTCACTCCTTTTCTCAACAGATATGGAGGACCGGAAAGAGCCCATCAATAGGAAACCAAACAGAGCTTGAAGAAGGACCAAAATGGCTTGACCAGTGGATGGCGAAGAAGCCATGGGAGAGCAGGGCAAGAGCTTCCATAGATCACAGACCACAGCCCCTTAAAACTCTCGAAATCGATACCTCTCGACCATACTCTTACTTATCTCCCAACAATCTCCACACAACGAATTATCAAACTCAATCACAAAGATCCAACTCGCTCTCTTCCTCCTCCCCACTCCACATAGCCCAGCATCACCAGTTCCCTGTCACCCCATCCCCGTCGAAATCCCGCCCGGTCCAACAAGTCCGGTCGGCGAGTCCCCGCTGCAGCAGAGAAGATAGAAACCAAATCAGCCACCACCACATTACATCTCAAACGCCAAGCTTGAGGTCCAAGCATCAACAACATCACAGTGGGGGAGGTGGAGGGACTTCATTGCCTAATTACATGGCGGCAACAGAGTCAGCCAAGGCCCGAGTGCGATCGCAAAGTGCACCGAGGCAAAGGCCAGCAACCCCGGAGAGGGAACGAGTAGGGACGGCGAGGAAGCGGCTTTCGTTTCCGGTACCACCAGATCCTTACAGTAGAATGGTGGGGTGTGGAATGTATGGGAATAACATGAAGAGCCCGAGTTTTAAGAGTGTTTGTGGAAGGTATGGGAGGTTGGAGGAACGGTCTAACTATTCTTCTTGCTATACGGAGAGCCATGGAGGAGAGGTTTCTCCTTCTTCAACCACTGACCTCAGGAGGTGGTTGAGATGA 1494 51.41 MGKKGATSWLTAVKRAFRSPSKDDDEKRREKRRWIFRKPTNHHQQPPPTDSVALQDHKHALALAEAAMAAARAAQQAVHLTHPARPGLDRHPHAATVIQTAFRGYLARRALRALKGLVKLQALVRGHNVRKQAKTTLQCMKALVRVQEQVLDHRMRLSLEGSRRSTFSDTNSVYENRYVQDVSERKTICLSREGSNITDDWDERPHTVEEVKAMLQHRRDAALNRDSVLSHSFSQQIWRTGKSPSIGNQTELEEGPKWLDQWMAKKPWESRARASIDHRPQPLKTLEIDTSRPYSYLSPNNLHTTNYQTQSQRSNSLSSSSPLHIAQHHQFPVTPSPSKSRPVQQVRSASPRCSREDRNQISHHHITSQTPSLRSKHQQHHSGGGGGTSLPNYMAATESAKARVRSQSAPRQRPATPERERVGTARKRLSFPVPPDPYSRMVGCGMYGNNMKSPSFKSVCGRYGRLEERSNYSSCYTESHGGEVSPSSTTDLRRWLR 497
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 23782856 23786241 - Maker00035190 Lcy4g1146 630672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy4g1146 497 MobiDBLite consensus disorder prediction 17 32 - -
Lcy4g1146 497 FunFam IQ-domain 11 90 141 - -
Lcy4g1146 497 PANTHER IQ-DOMAIN 5-RELATED 9 426 - -
Lcy4g1146 497 Gene3D - 88 145 - -
Lcy4g1146 497 SMART iq_5 90 112 IPR000048 GO:0005515(InterPro)
Lcy4g1146 497 SMART iq_5 113 134 IPR000048 GO:0005515(InterPro)
Lcy4g1146 497 MobiDBLite consensus disorder prediction 474 497 - -
Lcy4g1146 497 MobiDBLite consensus disorder prediction 1 51 - -
Lcy4g1146 497 MobiDBLite consensus disorder prediction 364 386 - -
Lcy4g1146 497 Pfam IQ calmodulin-binding motif 118 134 IPR000048 GO:0005515(InterPro)
Lcy4g1146 497 Pfam IQ calmodulin-binding motif 94 112 IPR000048 GO:0005515(InterPro)
Lcy4g1146 497 MobiDBLite consensus disorder prediction 291 350 - -
Lcy4g1146 497 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 76 136 IPR027417 -
Lcy4g1146 497 MobiDBLite consensus disorder prediction 282 423 - -
Lcy4g1146 497 ProSiteProfiles IQ motif profile. 91 119 - -
Lcy4g1146 497 Pfam Protein of unknown function (DUF4005) 350 457 IPR025064 -
Lcy4g1146 497 ProSiteProfiles IQ motif profile. 115 142 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g0136 Lcy-Chr12:1698349 Lcy4g1146 Lcy-Chr4:23782856 8.55E-12 dispersed
Lcy4g1146 Lcy-Chr4:23782856 Lcy9g1966 Lcy-Chr9:44620560 1.43E-21 dispersed
Lcy11g2121 Lcy-Chr11:44727359 Lcy4g1146 Lcy-Chr4:23782856 6.56E-152 transposed
Lcy11g0566 Lcy-Chr11:13848553 Lcy4g1146 Lcy-Chr4:23782856 1.60E-07 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy4g1146 - - - 0.0