Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy4g1146 | ATGGGGAAGAAGGGAGCTACCTCATGGTTGACCGCCGTCAAAAGGGCCTTCAGATCTCCCTCTAAAGATGATGATGAAAAGAGGAGAGAGAAACGCCGCTGGATTTTCAGAAAGCCAACCAATCACCATCAACAACCACCGCCCACTGATTCCGTAGCTTTACAAGACCACAAACATGCCCTTGCGCTGGCTGAAGCAGCCATGGCCGCCGCCAGAGCCGCTCAACAAGCTGTCCACCTCACCCACCCTGCCCGTCCCGGATTGGATCGCCATCCCCATGCCGCCACTGTCATTCAAACGGCCTTTAGAGGATATTTGGCAAGGAGGGCTCTACGGGCACTAAAAGGGTTGGTGAAGTTGCAAGCATTGGTGAGAGGACACAATGTGAGGAAGCAGGCGAAGACGACGCTGCAGTGCATGAAGGCATTAGTGAGAGTGCAAGAACAAGTGCTAGATCATCGGATGAGACTCTCCCTCGAAGGCAGTCGACGATCTACCTTCAGCGACACGAACAGCGTCTACGAAAATCGCTATGTTCAAGACGTTTCCGAAAGGAAGACTATTTGTCTATCAAGAGAAGGAAGCAACATTACAGACGATTGGGATGAACGTCCTCACACAGTTGAAGAAGTTAAGGCAATGTTGCAGCACAGAAGAGATGCTGCTTTGAATCGTGACAGCGTTTTATCTCACTCCTTTTCTCAACAGATATGGAGGACCGGAAAGAGCCCATCAATAGGAAACCAAACAGAGCTTGAAGAAGGACCAAAATGGCTTGACCAGTGGATGGCGAAGAAGCCATGGGAGAGCAGGGCAAGAGCTTCCATAGATCACAGACCACAGCCCCTTAAAACTCTCGAAATCGATACCTCTCGACCATACTCTTACTTATCTCCCAACAATCTCCACACAACGAATTATCAAACTCAATCACAAAGATCCAACTCGCTCTCTTCCTCCTCCCCACTCCACATAGCCCAGCATCACCAGTTCCCTGTCACCCCATCCCCGTCGAAATCCCGCCCGGTCCAACAAGTCCGGTCGGCGAGTCCCCGCTGCAGCAGAGAAGATAGAAACCAAATCAGCCACCACCACATTACATCTCAAACGCCAAGCTTGAGGTCCAAGCATCAACAACATCACAGTGGGGGAGGTGGAGGGACTTCATTGCCTAATTACATGGCGGCAACAGAGTCAGCCAAGGCCCGAGTGCGATCGCAAAGTGCACCGAGGCAAAGGCCAGCAACCCCGGAGAGGGAACGAGTAGGGACGGCGAGGAAGCGGCTTTCGTTTCCGGTACCACCAGATCCTTACAGTAGAATGGTGGGGTGTGGAATGTATGGGAATAACATGAAGAGCCCGAGTTTTAAGAGTGTTTGTGGAAGGTATGGGAGGTTGGAGGAACGGTCTAACTATTCTTCTTGCTATACGGAGAGCCATGGAGGAGAGGTTTCTCCTTCTTCAACCACTGACCTCAGGAGGTGGTTGAGATGA | 1494 | 51.41 | MGKKGATSWLTAVKRAFRSPSKDDDEKRREKRRWIFRKPTNHHQQPPPTDSVALQDHKHALALAEAAMAAARAAQQAVHLTHPARPGLDRHPHAATVIQTAFRGYLARRALRALKGLVKLQALVRGHNVRKQAKTTLQCMKALVRVQEQVLDHRMRLSLEGSRRSTFSDTNSVYENRYVQDVSERKTICLSREGSNITDDWDERPHTVEEVKAMLQHRRDAALNRDSVLSHSFSQQIWRTGKSPSIGNQTELEEGPKWLDQWMAKKPWESRARASIDHRPQPLKTLEIDTSRPYSYLSPNNLHTTNYQTQSQRSNSLSSSSPLHIAQHHQFPVTPSPSKSRPVQQVRSASPRCSREDRNQISHHHITSQTPSLRSKHQQHHSGGGGGTSLPNYMAATESAKARVRSQSAPRQRPATPERERVGTARKRLSFPVPPDPYSRMVGCGMYGNNMKSPSFKSVCGRYGRLEERSNYSSCYTESHGGEVSPSSTTDLRRWLR | 497 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 23782856 | 23786241 | - | Maker00035190 | Lcy4g1146 | 630672 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy4g1146 | 497 | MobiDBLite | consensus disorder prediction | 17 | 32 | - | - | |
Lcy4g1146 | 497 | FunFam | IQ-domain 11 | 90 | 141 | - | - | |
Lcy4g1146 | 497 | PANTHER | IQ-DOMAIN 5-RELATED | 9 | 426 | - | - | |
Lcy4g1146 | 497 | Gene3D | - | 88 | 145 | - | - | |
Lcy4g1146 | 497 | SMART | iq_5 | 90 | 112 | IPR000048 | GO:0005515(InterPro) | |
Lcy4g1146 | 497 | SMART | iq_5 | 113 | 134 | IPR000048 | GO:0005515(InterPro) | |
Lcy4g1146 | 497 | MobiDBLite | consensus disorder prediction | 474 | 497 | - | - | |
Lcy4g1146 | 497 | MobiDBLite | consensus disorder prediction | 1 | 51 | - | - | |
Lcy4g1146 | 497 | MobiDBLite | consensus disorder prediction | 364 | 386 | - | - | |
Lcy4g1146 | 497 | Pfam | IQ calmodulin-binding motif | 118 | 134 | IPR000048 | GO:0005515(InterPro) | |
Lcy4g1146 | 497 | Pfam | IQ calmodulin-binding motif | 94 | 112 | IPR000048 | GO:0005515(InterPro) | |
Lcy4g1146 | 497 | MobiDBLite | consensus disorder prediction | 291 | 350 | - | - | |
Lcy4g1146 | 497 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 76 | 136 | IPR027417 | - | |
Lcy4g1146 | 497 | MobiDBLite | consensus disorder prediction | 282 | 423 | - | - | |
Lcy4g1146 | 497 | ProSiteProfiles | IQ motif profile. | 91 | 119 | - | - | |
Lcy4g1146 | 497 | Pfam | Protein of unknown function (DUF4005) | 350 | 457 | IPR025064 | - | |
Lcy4g1146 | 497 | ProSiteProfiles | IQ motif profile. | 115 | 142 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy12g0136 | Lcy-Chr12:1698349 | Lcy4g1146 | Lcy-Chr4:23782856 | 8.55E-12 | dispersed | |
Lcy4g1146 | Lcy-Chr4:23782856 | Lcy9g1966 | Lcy-Chr9:44620560 | 1.43E-21 | dispersed | |
Lcy11g2121 | Lcy-Chr11:44727359 | Lcy4g1146 | Lcy-Chr4:23782856 | 6.56E-152 | transposed | |
Lcy11g0566 | Lcy-Chr11:13848553 | Lcy4g1146 | Lcy-Chr4:23782856 | 1.60E-07 | wgd |
Pathway information
