Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy4g1200 ATGGAAATGGAGCATGGAGGTGTTGTGGGCAAGGGGATGGAAGATGTAGACGACTCTGGTTCGTACAGAAAAATTATAATTGTTTCAGCAATTGCAGCTGGAATCCAATTTGGTTGGGCTCTCCAACTTTCATTGTTGACACCTTACATACAACAACTTGGGGTCCCACATACATGGTCATCTTTCATATGGCTTTGTGGCCCATTATCAGGGCTTATTGTGCAGCCGATTGTTGGCTACTACAGTGATCGTTGCACCTCTAGGTTTGGCCGTCGTCGGCCCTTCATCATTTCCGGGGCTGGCTTTGTGGCGATTGCAGTTTTCCTCATTGGGTTCGCTGCAGATATTGGGCATGCTGCGGGAGATGAGATCTCGAGCCCCACAAAACCAAGGGCTGTGGCCATATTTGTGGTTGGATTTTGGGTTCTTGATGTCGCCAACAACATGTTGCAAGGTCCTTGTAGAGCTCTGTTGGCAGATATATCATATAACAACCACAAAAAGATGAGACTGGCGAATGGATTTTTCTCCTTCTTCATGGGCGTAGGGAATGTTTTGGGCTATGCATCTGGGGCCAACAGCACACTCTATAAGGCCCTTCCCTTCACAGTCACTAAAGCATGTGGCCCTTACTGCGCCAACCTCAAAACATGTTTCTTAATCGACATTGTGCTACTCCTCGTCGTCACCACATTCGCGATGTTGATGGTTAGAGAGAAGCCATATGAGCACATGGAGATTGACGATGAATCCACACCCTTCTTCGGGCAGTTGCTGGGAGCACTGAAGCAGCTGTCCAAGCCCATGTGGATCTTGCTACTTGTAACCGCCTTGAATTGGATCGGTTGGTTCCCATTTATAATGTACGACACTGACTGGATGGGTGCAGAAGTGTATGGTGGAAAGCCGAGTGGGACCCCAGAAGAAGTGAGGTTCTATGACCTCGGTGTTCGTGCTGGAGCACTTGGGCTGATGATAAACTCGTTTGTTCTTGGATTTTATGCGTTGATGATAGAGCCAACAAGACGTATTCTAGGAGGTCTCAGGTTTGTGTGGGCAGTTGTAAACATTATATTTACAATTTGCATGGGATCCATGGTCGTGGTTACAAAGGTTGCCCAGCATTGGAGGTCCACTAATGGCTTGAAATTTCCACCCACCAATGTAAGGGCTGGAGCATTTACAATCTTTGCAATCTTGGGTATTCCACTCTCGGTCACTTATAGTGTCCCCTTTGCCCTTGCATCCATCTTTTCCTCAACCTCCGAGGCGGGTCAAGGGCTATCCTTGGGAATTCTCAACATCTTCATCGTCATCCCTCAATTCATCGTCTCCTCTATTAGTGGGCCCTTAGATGCAGCTTTTGGAGGAGGTAACTTACCCGCCTTTGTAATGGGTGGAATTGCTGCTTTTGCCAGCGCTCTTTGCGCCATCTTCCTACTCCCCGATCCACCACCTCAATCCAATCTCTCCTTAACAATGCCTGCTGGCCATTGA 1497 47.96 MEMEHGGVVGKGMEDVDDSGSYRKIIIVSAIAAGIQFGWALQLSLLTPYIQQLGVPHTWSSFIWLCGPLSGLIVQPIVGYYSDRCTSRFGRRRPFIISGAGFVAIAVFLIGFAADIGHAAGDEISSPTKPRAVAIFVVGFWVLDVANNMLQGPCRALLADISYNNHKKMRLANGFFSFFMGVGNVLGYASGANSTLYKALPFTVTKACGPYCANLKTCFLIDIVLLLVVTTFAMLMVREKPYEHMEIDDESTPFFGQLLGALKQLSKPMWILLLVTALNWIGWFPFIMYDTDWMGAEVYGGKPSGTPEEVRFYDLGVRAGALGLMINSFVLGFYALMIEPTRRILGGLRFVWAVVNIIFTICMGSMVVVTKVAQHWRSTNGLKFPPTNVRAGAFTIFAILGIPLSVTYSVPFALASIFSSTSEAGQGLSLGILNIFIVIPQFIVSSISGPLDAAFGGGNLPAFVMGGIAAFASALCAIFLLPDPPPQSNLSLTMPAGH 498
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 26072899 26074739 + Maker00011069 Lcy4g1200 630726

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy4g1200 498 NCBIfam sucrose/proton symporter 22 485 IPR005989 GO:0005886(InterPro)|GO:0008515(InterPro)|GO:0015770(InterPro)
Lcy4g1200 498 FunFam Sucrose transporter SUC2 23 244 - -
Lcy4g1200 498 CDD MFS_SLC45_SUC 25 479 - -
Lcy4g1200 498 Pfam MFS/sugar transport protein 37 282 - -
Lcy4g1200 498 Gene3D MFS general substrate transporter like domains 19 488 IPR036259 -
Lcy4g1200 498 PANTHER SUGAR TRANSPORTER 18 480 - GO:0005773(PANTHER)|GO:0005886(PANTHER)|GO:0008506(PANTHER)|GO:0016020(PANTHER)
Lcy4g1200 498 SUPERFAMILY MFS general substrate transporter 23 486 IPR036259 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy4g1200 K15378 - - csv:116401998 832.017
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g1150 Lcy-Chr13:26546029 Lcy4g1200 Lcy-Chr4:26072899 2.70E-115 dispersed
Lcy13g1450 Lcy-Chr13:33002247 Lcy4g1200 Lcy-Chr4:26072899 2.27E-126 dispersed
Lcy4g1195 Lcy-Chr4:25885630 Lcy4g1200 Lcy-Chr4:26072899 0 proximal
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy4g1200 . 15 487 Sucrose Transporter Gene Family AT1G22710 61.5 1.3e-175 613.6
Lcy4g1195 . 15 487 Sucrose Transporter Gene Family AT1G22710 61.5 1.3e-175 613.6
Lcy4g1200 . 13 482 Sucrose Transporter Gene Family AT2G14670 61.2 5.1e-169 591.7
Lcy4g1195 . 13 482 Sucrose Transporter Gene Family AT2G14670 61.2 5.1e-169 591.7
Lcy4g1200 . 15 412 Sucrose Transporter Gene Family AT1G66570 59.3 5.4e-141 498.4
Lcy4g1195 . 15 412 Sucrose Transporter Gene Family AT1G66570 59.3 5.4e-141 498.4
Lcy13g1150 . 223 664 Sucrose Transporter Gene Family AT2G02860 71.7 2.9e-182 635.6
Lcy4g1200 . 17 482 Sucrose Transporter Gene Family AT5G06170 59.2 5.3e-158 555.1
Lcy4g1195 . 17 482 Sucrose Transporter Gene Family AT5G06170 59.2 5.3e-158 555.1
Lcy4g1200 . 15 482 Sucrose Transporter Gene Family AT5G43610 60.9 1.8e-166 583.2
Lcy4g1195 . 15 482 Sucrose Transporter Gene Family AT5G43610 60.9 1.8e-166 583.2
Lcy13g1450 . 18 441 Sucrose Transporter Gene Family AT1G09960 67.4 7.9e-165 577.8
Lcy4g1200 . 21 492 Sucrose Transporter Gene Family AT1G09960 51.8 7.2e-134 474.9
Lcy4g1195 . 21 492 Sucrose Transporter Gene Family AT1G09960 51.8 7.2e-134 474.9
Lcy4g1200 . 14 499 Sucrose Transporter Gene Family AT1G71880 58.6 7.2e-166 581.3
Lcy4g1195 . 14 499 Sucrose Transporter Gene Family AT1G71880 58.6 7.2e-166 581.3
Lcy4g1200 . 14 487 Sucrose Transporter Gene Family AT1G71890 58.7 9.7e-163 570.9
Lcy4g1195 . 14 487 Sucrose Transporter Gene Family AT1G71890 58.7 9.7e-163 570.9
Lcy4g1200 . 14 499 Sucrose Transporter Gene Family AT1G71880 58.6 7.2e-166 581.3
Lcy4g1195 . 14 499 Sucrose Transporter Gene Family AT1G71880 58.6 7.2e-166 581.3
Lcy4g1200 . 15 487 Sucrose Transporter Gene Family AT1G22710 61.5 1.3e-175 613.6
Lcy4g1195 . 15 487 Sucrose Transporter Gene Family AT1G22710 61.5 1.3e-175 613.6
Lcy13g1150 . 223 664 Sucrose Transporter Gene Family AT2G02860 71.7 2.9e-182 635.6
Lcy13g1450 . 18 441 Sucrose Transporter Gene Family AT1G09960 67.4 7.9e-165 577.8
Lcy4g1200 . 21 492 Sucrose Transporter Gene Family AT1G09960 51.8 7.2e-134 474.9
Lcy4g1195 . 21 492 Sucrose Transporter Gene Family AT1G09960 51.8 7.2e-134 474.9
Lcy4g1200 . 14 487 Sucrose Transporter Gene Family AT1G71890 58.7 9.7e-163 570.9
Lcy4g1195 . 14 487 Sucrose Transporter Gene Family AT1G71890 58.7 9.7e-163 570.9
Lcy4g1200 . 15 482 Sucrose Transporter Gene Family AT5G43610 60.9 1.8e-166 583.2
Lcy4g1195 . 15 482 Sucrose Transporter Gene Family AT5G43610 60.9 1.8e-166 583.2
Lcy4g1200 . 15 412 Sucrose Transporter Gene Family AT1G66570 59.3 5.4e-141 498.4
Lcy4g1195 . 15 412 Sucrose Transporter Gene Family AT1G66570 59.3 5.4e-141 498.4
Lcy4g1200 . 13 482 Sucrose Transporter Gene Family AT2G14670 61.2 5.1e-169 591.7
Lcy4g1195 . 13 482 Sucrose Transporter Gene Family AT2G14670 61.2 5.1e-169 591.7
Lcy4g1200 . 17 482 Sucrose Transporter Gene Family AT5G06170 59.2 5.3e-158 555.1
Lcy4g1195 . 17 482 Sucrose Transporter Gene Family AT5G06170 59.2 5.3e-158 555.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002342 4 2 1 7 5 1 2 2 1 1 2 2 3 1 3 2 2 1 1 2 3 2 1 1 2 2 1 1 1 1 60