Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy4g1200 ATGGAAATGGAGCATGGAGGTGTTGTGGGCAAGGGGATGGAAGATGTAGACGACTCTGGTTCGTACAGAAAAATTATAATTGTTTCAGCAATTGCAGCTGGAATCCAATTTGGTTGGGCTCTCCAACTTTCATTGTTGACACCTTACATACAACAACTTGGGGTCCCACATACATGGTCATCTTTCATATGGCTTTGTGGCCCATTATCAGGGCTTATTGTGCAGCCGATTGTTGGCTACTACAGTGATCGTTGCACCTCTAGGTTTGGCCGTCGTCGGCCCTTCATCATTTCCGGGGCTGGCTTTGTGGCGATTGCAGTTTTCCTCATTGGGTTCGCTGCAGATATTGGGCATGCTGCGGGAGATGAGATCTCGAGCCCCACAAAACCAAGGGCTGTGGCCATATTTGTGGTTGGATTTTGGGTTCTTGATGTCGCCAACAACATGTTGCAAGGTCCTTGTAGAGCTCTGTTGGCAGATATATCATATAACAACCACAAAAAGATGAGACTGGCGAATGGATTTTTCTCCTTCTTCATGGGCGTAGGGAATGTTTTGGGCTATGCATCTGGGGCCAACAGCACACTCTATAAGGCCCTTCCCTTCACAGTCACTAAAGCATGTGGCCCTTACTGCGCCAACCTCAAAACATGTTTCTTAATCGACATTGTGCTACTCCTCGTCGTCACCACATTCGCGATGTTGATGGTTAGAGAGAAGCCATATGAGCACATGGAGATTGACGATGAATCCACACCCTTCTTCGGGCAGTTGCTGGGAGCACTGAAGCAGCTGTCCAAGCCCATGTGGATCTTGCTACTTGTAACCGCCTTGAATTGGATCGGTTGGTTCCCATTTATAATGTACGACACTGACTGGATGGGTGCAGAAGTGTATGGTGGAAAGCCGAGTGGGACCCCAGAAGAAGTGAGGTTCTATGACCTCGGTGTTCGTGCTGGAGCACTTGGGCTGATGATAAACTCGTTTGTTCTTGGATTTTATGCGTTGATGATAGAGCCAACAAGACGTATTCTAGGAGGTCTCAGGTTTGTGTGGGCAGTTGTAAACATTATATTTACAATTTGCATGGGATCCATGGTCGTGGTTACAAAGGTTGCCCAGCATTGGAGGTCCACTAATGGCTTGAAATTTCCACCCACCAATGTAAGGGCTGGAGCATTTACAATCTTTGCAATCTTGGGTATTCCACTCTCGGTCACTTATAGTGTCCCCTTTGCCCTTGCATCCATCTTTTCCTCAACCTCCGAGGCGGGTCAAGGGCTATCCTTGGGAATTCTCAACATCTTCATCGTCATCCCTCAATTCATCGTCTCCTCTATTAGTGGGCCCTTAGATGCAGCTTTTGGAGGAGGTAACTTACCCGCCTTTGTAATGGGTGGAATTGCTGCTTTTGCCAGCGCTCTTTGCGCCATCTTCCTACTCCCCGATCCACCACCTCAATCCAATCTCTCCTTAACAATGCCTGCTGGCCATTGA 1497 47.96 MEMEHGGVVGKGMEDVDDSGSYRKIIIVSAIAAGIQFGWALQLSLLTPYIQQLGVPHTWSSFIWLCGPLSGLIVQPIVGYYSDRCTSRFGRRRPFIISGAGFVAIAVFLIGFAADIGHAAGDEISSPTKPRAVAIFVVGFWVLDVANNMLQGPCRALLADISYNNHKKMRLANGFFSFFMGVGNVLGYASGANSTLYKALPFTVTKACGPYCANLKTCFLIDIVLLLVVTTFAMLMVREKPYEHMEIDDESTPFFGQLLGALKQLSKPMWILLLVTALNWIGWFPFIMYDTDWMGAEVYGGKPSGTPEEVRFYDLGVRAGALGLMINSFVLGFYALMIEPTRRILGGLRFVWAVVNIIFTICMGSMVVVTKVAQHWRSTNGLKFPPTNVRAGAFTIFAILGIPLSVTYSVPFALASIFSSTSEAGQGLSLGILNIFIVIPQFIVSSISGPLDAAFGGGNLPAFVMGGIAAFASALCAIFLLPDPPPQSNLSLTMPAGH 498
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 26072899 26074739 + Maker00011069 Lcy4g1200 630726
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy4g1200 498 NCBIfam sucrose/proton symporter 22 485 IPR005989 GO:0005886(InterPro)|GO:0008515(InterPro)|GO:0015770(InterPro)
Lcy4g1200 498 FunFam Sucrose transporter SUC2 23 244 - -
Lcy4g1200 498 CDD MFS_SLC45_SUC 25 479 - -
Lcy4g1200 498 Pfam MFS/sugar transport protein 37 282 - -
Lcy4g1200 498 Gene3D MFS general substrate transporter like domains 19 488 IPR036259 -
Lcy4g1200 498 PANTHER SUGAR TRANSPORTER 18 480 - GO:0005773(PANTHER)|GO:0005886(PANTHER)|GO:0008506(PANTHER)|GO:0016020(PANTHER)
Lcy4g1200 498 SUPERFAMILY MFS general substrate transporter 23 486 IPR036259 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g1150 Lcy-Chr13:26546029 Lcy4g1200 Lcy-Chr4:26072899 2.70E-115 dispersed
Lcy13g1450 Lcy-Chr13:33002247 Lcy4g1200 Lcy-Chr4:26072899 2.27E-126 dispersed
Lcy4g1195 Lcy-Chr4:25885630 Lcy4g1200 Lcy-Chr4:26072899 0 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy4g1200 K15378 - csv:116401998 832.017