Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy4g1224 ATGAATTCCATCTTGTGTTGTCATGTCTCCAGCCCCCCATTCGGTCTTGTCCCCAAGAAGGATACCCCCGCTCGCATGTCTCCTACATGGACGCCTTGGATCAATACGTCTGTATCGAATACGAAGCGGGCCGTATCACATAGTGTTACCAGGATAAGTGTTTCAGATCTCTTTCTCAACAAGTCTCATTTCGTTCCACCGTCTCCATCTTTCTCAACAAGTGTTTCAGATCTCTTTCTCAACAAGTCTCGTTTCGTTCCGCCATCTCCATCTTTCTCAACAACTATCGCAGCTCTCCGTGAATCTCGTTTTCCAGATTTTGAAACTGCAACATTTGGAGAGCGGCTTCCTCCTGGAAGCGGATGTCGATCTCTTGGAAGAATGGCGGATGGGGGCATTGAGGGAATGGTCCTTGAAGCAAGTGGCGAACATGCAAGCGGCTACAAGCCAAGTACAGAGGGGAGATGCAACAACAAAGGCAGCCATGGAAGGAATAAGAACAAAAATAGCAACGGCAAGAAGAAGAAGAAGAGGTGGTTACAGAGGTGGTGGCGTTTTGTTTCCGGCCCCCTTCTCCAAGATCGATCTCCCTATTCTTTTGGGTCTTCTTCTCCCCTCTCCGTCGTTCTGTTTCCAACCCCGCCGAAGTTCGTAATTTCTCCCCTCCACCGCCCACTCCATCGCCGCCCAAAAGCGTATCTGTCTAATTTCTCATCTTCTCCAAGTTGCCCTGCTGTCGTTCATGTGGTGAATGGAGTAATCCAAGGTGTCCGAGAAATTTGTACAATGAAGAAAATGGAGTTCCAAGTGCTCTTTTTGGTGCCCTTTCTGTCACTCTTCTCCTCTGCCGCCGCATGGATTAATGCTCACGCTACCTTCTACGGCGGCAGTGATGCTGCTGGGACAATGGGTGGGGCTTGTGGGTATGGGAATCTTTACAGTCAAGGGTACGGGACCAACACTGCGGCTGTTAGCACTGCCCTCTTCAACAATGGGCTGAGCTGTGGGTCTTGCTATGAGATCAAGTGCGTGGGTGACCCCAAATGGTGCCTTCCGGGCTCCATTTTGGTCACTGCTACCAACTTCTGTCCGCCCAATAACGCCCTTCCCAGCACTGCCGGCGGCTGGTGCAACCCTCCTCTCCACCATTTTGACCTCGCCCAGCCGGTCTTCCTCCACATTGCCCAATACCATGCCGGCATCGTCCCCGTCGCTTACCGGAGGGCTCCGTGCAGGAGGAAGGGAGGAATAAGGTTCACAATCAACGGGCATTCCTACTTCAACTTATTGCTGATTACGAACGTGGGGGGCGCCGGAGATGTGCGAGCAGTGTCCGTGAAAGGGTCGAGAAGTGGTTGGCAATCGATGTCAAGAAACTGGGGACAGAACTGGCAGAGCAACAACTACTTGGATGGGCAAGCCCTCTCTTTCAAGGTCACCACCAGCGACGGCCGTACACTCGTTTCCAACAACGTCGCTCCCGCCGGCTGGGCCTTCGGCCAGACCTTCACCGGCGCCCAATTCCGGTGA 1530 52.81 MNSILCCHVSSPPFGLVPKKDTPARMSPTWTPWINTSVSNTKRAVSHSVTRISVSDLFLNKSHFVPPSPSFSTSVSDLFLNKSRFVPPSPSFSTTIAALRESRFPDFETATFGERLPPGSGCRSLGRMADGGIEGMVLEASGEHASGYKPSTEGRCNNKGSHGRNKNKNSNGKKKKKRWLQRWWRFVSGPLLQDRSPYSFGSSSPLSVVLFPTPPKFVISPLHRPLHRRPKAYLSNFSSSPSCPAVVHVVNGVIQGVREICTMKKMEFQVLFLVPFLSLFSSAAAWINAHATFYGGSDAAGTMGGACGYGNLYSQGYGTNTAAVSTALFNNGLSCGSCYEIKCVGDPKWCLPGSILVTATNFCPPNNALPSTAGGWCNPPLHHFDLAQPVFLHIAQYHAGIVPVAYRRAPCRRKGGIRFTINGHSYFNLLLITNVGGAGDVRAVSVKGSRSGWQSMSRNWGQNWQSNNYLDGQALSFKVTTSDGRTLVSNNVAPAGWAFGQTFTGAQFR 509
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 27626994 27635585 - Maker00011031 Lcy4g1224 630750
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy4g1224 509 FunFam Expansin 416 508 - -
Lcy4g1224 509 Pfam Lytic transglycolase 321 406 IPR009009 -
Lcy4g1224 509 Pfam Expansin C-terminal domain 417 494 IPR007117 -
Lcy4g1224 509 PANTHER EXPANSIN-A15 269 508 IPR002963 GO:0009664(InterPro)
Lcy4g1224 509 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 426 505 IPR007117 -
Lcy4g1224 509 Gene3D - 278 412 IPR036908 -
Lcy4g1224 509 MobiDBLite consensus disorder prediction 144 177 - -
Lcy4g1224 509 SUPERFAMILY Barwin-like endoglucanases 277 434 IPR036908 -
Lcy4g1224 509 PRINTS Expansin/Lol pI family signature 303 321 IPR007118 GO:0005576(InterPro)
Lcy4g1224 509 PRINTS Expansin/Lol pI family signature 399 415 IPR007118 GO:0005576(InterPro)
Lcy4g1224 509 PRINTS Expansin/Lol pI family signature 285 300 IPR007118 GO:0005576(InterPro)
Lcy4g1224 509 PRINTS Expansin/Lol pI family signature 325 343 IPR007118 GO:0005576(InterPro)
Lcy4g1224 509 PRINTS Expansin/Lol pI family signature 453 467 IPR007118 GO:0005576(InterPro)
Lcy4g1224 509 PRINTS Expansin/Lol pI family signature 491 505 IPR007118 GO:0005576(InterPro)
Lcy4g1224 509 FunFam Expansin 277 412 - -
Lcy4g1224 509 PRINTS Expansin signature 391 404 IPR002963 GO:0009664(InterPro)
Lcy4g1224 509 PRINTS Expansin signature 491 507 IPR002963 GO:0009664(InterPro)
Lcy4g1224 509 PRINTS Expansin signature 355 365 IPR002963 GO:0009664(InterPro)
Lcy4g1224 509 PRINTS Expansin signature 374 391 IPR002963 GO:0009664(InterPro)
Lcy4g1224 509 PRINTS Expansin signature 343 354 IPR002963 GO:0009664(InterPro)
Lcy4g1224 509 PRINTS Expansin signature 462 483 IPR002963 GO:0009664(InterPro)
Lcy4g1224 509 PRINTS Expansin signature 316 330 IPR002963 GO:0009664(InterPro)
Lcy4g1224 509 PRINTS Expansin signature 415 427 IPR002963 GO:0009664(InterPro)
Lcy4g1224 509 PRINTS Expansin signature 427 448 IPR002963 GO:0009664(InterPro)
Lcy4g1224 509 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 304 416 IPR007112 -
Lcy4g1224 509 SUPERFAMILY PHL pollen allergen 413 505 IPR036749 -
Lcy4g1224 509 SMART dpbb_1 321 406 IPR007112 -
Lcy4g1224 509 Gene3D - 416 508 IPR036749 -
Lcy4g1224 509 CDD DPBB_EXPA_N 286 411 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g2014 Lcy-Chr10:44274019 Lcy4g1224 Lcy-Chr4:27626994 2.76E-133 dispersed
Lcy2g0567 Lcy-Chr2:4877217 Lcy4g1224 Lcy-Chr4:27626994 5.29E-141 dispersed
Lcy4g1224 Lcy-Chr4:27626994 Lcy7g0294 Lcy-Chr7:2530779 1.29E-150 dispersed
Lcy4g0426 Lcy-Chr4:5201974 Lcy4g1224 Lcy-Chr4:27626994 1.16E-34 transposed
Lcy1g2639 Lcy-Chr1:49671373 Lcy4g1224 Lcy-Chr4:27626994 1.27E-12 wgd
Lcy10g0860 Lcy-Chr10:26739079 Lcy4g1224 Lcy-Chr4:27626994 3.25E-13 wgd
Lcy10g0800 Lcy-Chr10:24364121 Lcy4g1224 Lcy-Chr4:27626994 5.74E-12 wgd
Lcy10g0691 Lcy-Chr10:20399686 Lcy4g1224 Lcy-Chr4:27626994 4.24E-10 wgd
Lcy11g0599 Lcy-Chr11:15172211 Lcy4g1224 Lcy-Chr4:27626994 6.65E-13 wgd
Lcy13g1048 Lcy-Chr13:22987156 Lcy4g1224 Lcy-Chr4:27626994 7.64E-16 wgd
Lcy13g1149 Lcy-Chr13:26515585 Lcy4g1224 Lcy-Chr4:27626994 2.84E-09 wgd
Lcy13g0807 Lcy-Chr13:12990412 Lcy4g1224 Lcy-Chr4:27626994 5.20E-13 wgd
Lcy2g1847 Lcy-Chr2:32163662 Lcy4g1224 Lcy-Chr4:27626994 1.17E-09 wgd
Lcy2g1853 Lcy-Chr2:32325666 Lcy4g1224 Lcy-Chr4:27626994 2.98E-18 wgd
Lcy2g2196 Lcy-Chr2:45032894 Lcy4g1224 Lcy-Chr4:27626994 6.46E-12 wgd
Lcy2g1783 Lcy-Chr2:28826615 Lcy4g1224 Lcy-Chr4:27626994 2.07E-17 wgd
Lcy3g0450 Lcy-Chr3:15686323 Lcy4g1224 Lcy-Chr4:27626994 4.50E-83 wgd
Lcy3g0607 Lcy-Chr3:22998737 Lcy4g1224 Lcy-Chr4:27626994 3.14E-12 wgd
Lcy3g0201 Lcy-Chr3:5769252 Lcy4g1224 Lcy-Chr4:27626994 5.58E-12 wgd
Lcy3g0393 Lcy-Chr3:12572832 Lcy4g1224 Lcy-Chr4:27626994 1.22E-17 wgd
Lcy4g1008 Lcy-Chr4:17791145 Lcy4g1224 Lcy-Chr4:27626994 2.54E-15 wgd
Lcy4g1224 Lcy-Chr4:27626994 Lcy5g1092 Lcy-Chr5:22442074 8.28E-08 wgd
Lcy4g1224 Lcy-Chr4:27626994 Lcy5g0898 Lcy-Chr5:15181212 5.44E-16 wgd
Lcy4g1224 Lcy-Chr4:27626994 Lcy6g2003 Lcy-Chr6:42665910 1.07E-78 wgd
Lcy4g1224 Lcy-Chr4:27626994 Lcy7g1806 Lcy-Chr7:39360768 6.23E-13 wgd
Lcy4g1224 Lcy-Chr4:27626994 Lcy7g1841 Lcy-Chr7:41418922 2.61E-12 wgd
Lcy4g1224 Lcy-Chr4:27626994 Lcy7g1770 Lcy-Chr7:37874345 1.79E-11 wgd
Lcy4g1224 Lcy-Chr4:27626994 Lcy8g0845 Lcy-Chr8:30452906 3.30E-15 wgd
Lcy4g1224 Lcy-Chr4:27626994 Lcy8g0585 Lcy-Chr8:19971290 1.27E-17 wgd
Lcy4g1224 Lcy-Chr4:27626994 Lcy8g0122 Lcy-Chr8:2908737 7.47E-09 wgd
Lcy4g1224 Lcy-Chr4:27626994 Lcy8g0436 Lcy-Chr8:13759119 6.94E-12 wgd
Lcy4g1224 Lcy-Chr4:27626994 Lcy9g0358 Lcy-Chr9:9824539 2.32E-08 wgd
Lcy4g1224 Lcy-Chr4:27626994 Lcy9g0691 Lcy-Chr9:23688591 7.59E-18 wgd
Lcy4g1224 Lcy-Chr4:27626994 Lcy9g0540 Lcy-Chr9:16875179 3.88E-17 wgd
Lcy4g1224 Lcy-Chr4:27626994 Lcy9g0494 Lcy-Chr9:14651484 3.94E-20 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy4g1224 - - - 0.0