Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy4g1251 ATGAAGACCCACGGCTGTCGGATTGCTTGCGCAAAGGATGGCTGTGTCGAAACTGTTGCCGTCGCGCGTTTGTGTTGTCCCATTGCCGTGGGTCTTCTGCCATCGACCAGATCTAGAAGTTCCAGAGCTATGGGTTTTATTTTCGTTCTAGAGCTGTGGGTCTTCTACCATCGGTCAGATCTGGAAGTCTCAAATCGCCACTATCGGAGACCAGGCCAAGCTATTGTGTTGAGAATCCGTGGGATTGGACTGTCCCGACAGGGAAGGGGCAGAAGAAGAGGGTTCCTGACGGATCGGTACAGAGAAAGTGGTGGGAGTTGGGGGTTGAATAAGGCGGTTGGCCTGGAGTGCATTCTAAGCATTGTTAGGGCACTTCGGATGGGGTCCTGCTTGTCTGCGGAGAGCAGGAGCCCCATTCCTGGTTCCCCAACCTCTCCGGCTAAGCACCATCGAAGCAGGAGCAAGAGGCGATATGGTTCTCGGAATTCCTCCTTTGGGGATCTGTCTCTCCATCGGATCCCCGGCAGGCTCTTCGCCAATGGCTTCACCGACGTTGCCTCTCTCTTCACTCAGCAGGGCAAGAAAGGGACCAATCAGGACGCCATGATTGTTTGGGAGAATTTTGGCTCTAGAACTGATACGATCTTCTGTGGGGTTTTCGATGGCCACGGCCCCTATGGTCATATGGTTGCAAAGAAAGTGAGGGATTCTCTTCCTCTGAGGTTGAGTGCTCATTGGGAGGTAAACTTGACCACGGATGATGTTCTTAGAGAGATCAGCCTTAATACAGGAAGTATGAACTCGGATGATGCTACCTCCTTTTTATCTGCTGATGAAGAGTTTAGGGCATCCACTGATGTTGATGGAACAGAAAAGCAACCTGAAATTTTCCATACTTTGAAGGAGTCGTTTCTTAAGGCTTTTAGAGTTATGGACAGAGAGCTCAGAATGCACCAAACTATAGATAGCTTCTGTAGTGGGACTACAGCAGTGACTTTGGTTAAACAGGGTCAGGATCTTGTCATTGGAAACATTGGGGACTCCCGAGCTGTTATGGGTACGAGAGATAAAGATGACTCTCTTGTTGCAATTCAATTGACTGTAGATCTCAAGCCAAATCTTCCAGCTGAAGCAGAGAGAATCCGTAAGTGTAAAGGTCGTGTCTTTGCTCTCCAAGACGAACCTGATGTTGCTCGAGTTTGGCTTCCAAACAGCAACTCTCCTGGACTTGCCATGGCACGGGCATTTGGAGACTTCTGCCTCAAAGACTTTGGTCTTATCTCTGTACCTGAGATATCATATCGACGGCTCACTGAAAAAGACGAATTCATTGTTCTGGCTACAGATGGAATATGGGATGTGCTGTCAAACAAAGAGGTCGTAGATATTGTTGCATCAGCTCCAAAACGTACTACTGCAGCTCGAACTCTAGTCGAGACAGCCATTAAAGCATGGAGACATAAATACCCAACTTCCAAGATTGATGACTGTGCGGTCGTCTGCCTCTTCCTCGATGCAAACTCCAGCAATCTGTCATCTGCTTCCAATAGCAAACCAGAAGAGCATCAAGGTTTAGGAGATCAAGTCAGCAATGCAGTTGAGAATGAAAATCTCTCTGGGCCAAATGGTCTGAATCGTTCGGGAACCGTCCGAACCAGCAAGGAAATTTTGCAGGATGGAAGCGATGAAGAAGATGAATCAAAGGAGGAAGAACAGTCAGAAATGGGAATAGAATGGTCTGCCCTGGAAGGAGTGTCACGCGTAAACACTTTGGTAAACCTGCCAAGATTTGATCCTGGAAAAGAAGATAAGAAAGGGCGTAAGTAG 1827 48.06 MKTHGCRIACAKDGCVETVAVARLCCPIAVGLLPSTRSRSSRAMGFIFVLELWVFYHRSDLEVSNRHYRRPGQAIVLRIRGIGLSRQGRGRRRGFLTDRYRESGGSWGLNKAVGLECILSIVRALRMGSCLSAESRSPIPGSPTSPAKHHRSRSKRRYGSRNSSFGDLSLHRIPGRLFANGFTDVASLFTQQGKKGTNQDAMIVWENFGSRTDTIFCGVFDGHGPYGHMVAKKVRDSLPLRLSAHWEVNLTTDDVLREISLNTGSMNSDDATSFLSADEEFRASTDVDGTEKQPEIFHTLKESFLKAFRVMDRELRMHQTIDSFCSGTTAVTLVKQGQDLVIGNIGDSRAVMGTRDKDDSLVAIQLTVDLKPNLPAEAERIRKCKGRVFALQDEPDVARVWLPNSNSPGLAMARAFGDFCLKDFGLISVPEISYRRLTEKDEFIVLATDGIWDVLSNKEVVDIVASAPKRTTAARTLVETAIKAWRHKYPTSKIDDCAVVCLFLDANSSNLSSASNSKPEEHQGLGDQVSNAVENENLSGPNGLNRSGTVRTSKEILQDGSDEEDESKEEEQSEMGIEWSALEGVSRVNTLVNLPRFDPGKEDKKGRK 608
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 28606587 28611774 - Maker00011032 Lcy4g1251 630777
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy4g1251 608 FunFam probable protein phosphatase 2C 33 180 507 - -
Lcy4g1251 608 MobiDBLite consensus disorder prediction 533 555 - -
Lcy4g1251 608 CDD PP2Cc 185 504 IPR001932 -
Lcy4g1251 608 Gene3D - 183 506 IPR036457 -
Lcy4g1251 608 PANTHER PROTEIN PHOSPHATASE 157 503 IPR015655 GO:0004722(PANTHER)|GO:0004722(InterPro)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Lcy4g1251 608 SMART PP2C_4 176 502 IPR001932 -
Lcy4g1251 608 SUPERFAMILY PP2C-like 185 505 IPR036457 -
Lcy4g1251 608 ProSiteProfiles PPM-type phosphatase domain profile. 185 504 IPR001932 -
Lcy4g1251 608 MobiDBLite consensus disorder prediction 533 580 - -
Lcy4g1251 608 Pfam Protein phosphatase 2C 299 483 IPR001932 -
Lcy4g1251 608 MobiDBLite consensus disorder prediction 134 163 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy2g2311 Lcy-Chr2:48436680 Lcy4g1251 Lcy-Chr4:28606587 1.18E-101 dispersed
Lcy4g0630 Lcy-Chr4:7493870 Lcy4g1251 Lcy-Chr4:28606587 1.84E-138 dispersed
Lcy4g1251 Lcy-Chr4:28606587 Lcy8g1522 Lcy-Chr8:41844103 4.37E-137 dispersed
Lcy1g1596 Lcy-Chr1:16023821 Lcy4g1251 Lcy-Chr4:28606587 3.03E-89 transposed
Lcy3g1190 Lcy-Chr3:37222537 Lcy4g1251 Lcy-Chr4:28606587 9.74E-161 transposed
Lcy9g1989 Lcy-Chr9:44765427 Lcy4g1251 Lcy-Chr4:28606587 6.70E-100 transposed
Lcy12g0857 Lcy-Chr12:11843620 Lcy4g1251 Lcy-Chr4:28606587 9.33E-08 wgd
Lcy2g1443 Lcy-Chr2:17734902 Lcy4g1251 Lcy-Chr4:28606587 7.59E-178 wgd
Lcy4g1251 Lcy-Chr4:28606587 Lcy6g1955 Lcy-Chr6:41457980 5.15E-47 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy4g1251 - - - 0.0