Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy4g1350 ATGGGTTCAATGAACTGGTTAGGCTTCTCCCTCTCCCCTCAAGAACAACAACTCCCACAGCAACCCTCCGACCACCCTCACGCCGCCGCCGCCGTCCCCTTCACCGCCGACGACATCTCCTGCTCCGCCGTCTCCACCGTCTGCTTTGATAACCTCCCTTCTTCCTATGGCGTCTACGAACCCTTCAACCGAAATAATCACTCTCAAGATTGGAACAATATGAAGGGTTTAGGGTCGGCTCAAAGTTCGGATTTTTCTGCTTTAATCGAAACCCAACACCAACCGAAGCTTGAAAATTTCCTCGGCCGCCACTCTTTCACCGACCACGACCACGCCGCTGCCGCCGCCGCTGCTGCCGTTGTGTACACTAATTCATCCGGCAACTACATGTTCCAAAATTGTTCTTTGGAGCTTCCGTCTGATCAGGCCAACGGCGGTGGCGGAAGAGCCAACGCCGGCAACGGCAACAACAGTAGCTCTATTGGGTTGTCTATGATCAAGACGTGGCTGAGAAATCAACCGGCGCCGCCGCAAGCGGGAGCCAAGAGCGGCGGAGATCACGACGGTGCAGTTGGATCAGCGAATATCACAAACGCACATACTTTATCGCTATCGATGAACACCGGGCCACCGCCGCCGTCGCAGTCCTCCGGCTCGACGGCTCTTCCACTTCTCACGGCCAATGGCGGTGGAAGCGGCTGCGAAAGCTCCTCCTCCGATAACAAACAGCCCAAATCGGCTGCTGCGGAACTGGACGCCGAAAACGGCGCCGTTGAAGCTGTCCCGAGAAAATCTGTCGACACATTCGGACAAAGAACTTCTATCTATCGCGGTGTAACCAGGCATAGATGGACAGGAAGATATGAAGCTCATCTATGGGACAATAGTTGCAGAAGAGAAGGACAAACTAGAAAAGGAAGACAAGGAGGTTATGACAAAGAAGAAAAGGCTGCAAGAGCCTACGATTTAGCAGCACTTAAATACTGGGGTACCACAACCACAACTAATTTTCCAATTAGTGATTACGAAAAAGAGTTGGAAGACATGAAGCACATGACCAGGCAAGAGTTTGTTGCGTCTCTCAGAAGGAAGAGTAGTGGGTTTTCTCGTGGAGCTTCCATTTACCGTGGAGTAACAAGACACCACCAGCATGGGAGATGGCAAGCAAGAATAGGGAGAGTTGCTGGGAATAAAGACCTCTACTTGGGAACTTTCAGCACACAAGAGGAAGCGGCAGAGGCATATGACATAGCGGCCATAAAGTTTCGGGGACTAAACGCAGTGACCAACTTTGACATGAGTCGTTACGATGTCAAAGCCATTCTTGAAAGCAACACATTACCCATCGGCGGTGCTGCCAAGCGCTTAAAAGACATCGACCATTCCGACATCCCCCTGGACCCCCAACGAACCGACGACAACATAACGTCGCACCTCTCTGATGGAATAATCACCACCACCACCACCCATTACGGTGGAGGATGGCCCACTCTCGCCTGCCACCACCACCCCTATGCCTTCCACTACCCCTATGCCACCCCACAACAACGCCTATGGTGCAAGCAAGAGCACGATGCCACCGCCACCGCCGCTGACAACTTCTTCCCCCAGGGCGGGGCCATGGACTCAATGGACCACAGCTCTGGCTCGAGCTCCGTTGTTTACAGTAGCGGCAGCGGAGACGGGTACGGTGCGAACTTCCTGATTCCGATGGGGGCGGCGGGGGCGGAAGGCAGCACCAACAACAACAATGGCGGATTGGGAGACATTGGAGAAGTGAATTTGTTTGGTTGTTCTTCTAACGTGGATGACCCATACCATGCAACAAGGACGACCAATTTGTATAATTATCATAATTCCTCTCATCAGCTGCAGCCGCCCCCGGGGCTGCAAGGCTCCGCCTGCAACAACTGGCTTCCACCCGCCAGGTCGGTTTGTCATGGCGGAGCTCCGCCGCCCTTCACCATTTGGAATGACACTTGA 1983 53.56 MGSMNWLGFSLSPQEQQLPQQPSDHPHAAAAVPFTADDISCSAVSTVCFDNLPSSYGVYEPFNRNNHSQDWNNMKGLGSAQSSDFSALIETQHQPKLENFLGRHSFTDHDHAAAAAAAAVVYTNSSGNYMFQNCSLELPSDQANGGGGRANAGNGNNSSSIGLSMIKTWLRNQPAPPQAGAKSGGDHDGAVGSANITNAHTLSLSMNTGPPPPSQSSGSTALPLLTANGGGSGCESSSSDNKQPKSAAAELDAENGAVEAVPRKSVDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQTRKGRQGGYDKEEKAARAYDLAALKYWGTTTTTNFPISDYEKELEDMKHMTRQEFVASLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGLNAVTNFDMSRYDVKAILESNTLPIGGAAKRLKDIDHSDIPLDPQRTDDNITSHLSDGIITTTTTHYGGGWPTLACHHHPYAFHYPYATPQQRLWCKQEHDATATAADNFFPQGGAMDSMDHSSGSSSVVYSSGSGDGYGANFLIPMGAAGAEGSTNNNNGGLGDIGEVNLFGCSSNVDDPYHATRTTNLYNYHNSSHQLQPPPGLQGSACNNWLPPARSVCHGGAPPPFTIWNDT 660
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 32415061 32419944 - Maker00003111 Lcy4g1350 630876
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy4g1350 660 MobiDBLite consensus disorder prediction 173 264 - -
Lcy4g1350 660 Pfam AP2 domain 375 424 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy4g1350 660 ProSiteProfiles AP2/ERF domain profile. 374 432 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy4g1350 660 CDD AP2 373 434 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy4g1350 660 PRINTS Ethylene responsive element binding protein signature 414 434 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy4g1350 660 PRINTS Ethylene responsive element binding protein signature 276 287 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy4g1350 660 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 195 467 - -
Lcy4g1350 660 CDD AP2 274 340 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy4g1350 660 Gene3D AP2/ERF domain 374 434 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy4g1350 660 Gene3D AP2/ERF domain 275 340 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy4g1350 660 SUPERFAMILY DNA-binding domain 373 434 IPR016177 GO:0003677(InterPro)
Lcy4g1350 660 ProSiteProfiles AP2/ERF domain profile. 275 338 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy4g1350 660 MobiDBLite consensus disorder prediction 194 245 - -
Lcy4g1350 660 FunFam AP2-like ethylene-responsive transcription factor 373 434 - -
Lcy4g1350 660 FunFam AP2-like ethylene-responsive transcription factor ANT 274 340 - -
Lcy4g1350 660 SUPERFAMILY DNA-binding domain 274 340 IPR016177 GO:0003677(InterPro)
Lcy4g1350 660 SMART rav1_2 275 344 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy4g1350 660 SMART rav1_2 374 438 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g0109 Lcy-Chr13:1031891 Lcy4g1350 Lcy-Chr4:32415061 3.40E-111 dispersed
Lcy13g2154 Lcy-Chr13:40451160 Lcy4g1350 Lcy-Chr4:32415061 1.48E-75 dispersed
Lcy1g0889 Lcy-Chr1:7703336 Lcy4g1350 Lcy-Chr4:32415061 8.70E-56 dispersed
Lcy4g1350 Lcy-Chr4:32415061 Lcy6g1105 Lcy-Chr6:12454166 3.69E-113 dispersed
Lcy2g0293 Lcy-Chr2:2320646 Lcy4g1350 Lcy-Chr4:32415061 2.73E-102 transposed
Lcy8g2105 Lcy-Chr8:47235768 Lcy4g1350 Lcy-Chr4:32415061 6.61E-117 transposed
Lcy10g0904 Lcy-Chr10:28501189 Lcy4g1350 Lcy-Chr4:32415061 3.59E-08 wgd
Lcy10g0392 Lcy-Chr10:8243982 Lcy4g1350 Lcy-Chr4:32415061 3.73E-76 wgd
Lcy11g0532 Lcy-Chr11:12585232 Lcy4g1350 Lcy-Chr4:32415061 2.86E-37 wgd
Lcy4g1350 Lcy-Chr4:32415061 Lcy8g0777 Lcy-Chr8:28496511 3.67E-42 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19985 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy4g1350 K09285 - csv:101219473 996.497