Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy4g1363 ATGGGAAAGAAAAGGAAACTTGAGGATGAGTATACAGGAGAGAGTAGCTTTGATATTGTTCATCATGTCTCTATGCAAAACTATATAATCTTGGCCGAGGCAGATATACGGCAGCGACAGGAGGAAGACATCATGAGAGTGTCCACTGTTCTTTCTATTTCAAAAGTAGCAGCTAGCATCCTGCTCCGATATTACAACTGGAGTGTCAGTAAAGTGCATGATGAATGGTTTGCGGATGAAGAAAAGGTCCGTAGAGCTGTTGGCTTATTAGAAAAACCAGTTTTGCGACATTCAAATGAAGTAGAACTACCTTGCGGTATATGTTTTGAAATCTATTCACGTGATAAGATTCAGTCTGCTGCTTGTGGCCATCCATTTTGCAATGCGTGTTGGACAGGCATGAGGAAGATTTGTATCATTTGCTGTGGGAGTGACAATTTGCTAACTACCTTTGGGATTGTTGGAACTTGGAGGAGTTCATTTGGTGTTAGTAGGCCGCGTAATAGAGAAGGGCTGTTGGAGGAGGTGCTTTTGCATCCTCCCTTTTGGGAGAAAGGCAATTTGTTGTGCAATGAAGGTAAAGGTGATATGCATCCACTTCATTCATCTCGCACCACACCAACTATATCTCTTGTTCTTTGTCTTAATCCAAGCCTCAATGATGGCAATAGCATCCCGGCCTTTTCAGCTTCTGTGGAATGCAAGGTGGAGCCTTTTACTAAGGATTGGAGGTATATTTCTGAAATTTTGAAGAAAGAAGTTTCTGAAAGTTGTATAATCAATCCATTTTCTGCCGATAAAGCTTTGTTTAAAATGAAGGATTTTAAAGGGTTTGCTGGTAGAGTACTTCTTGATTCATGGCAAAAGATGGGAGGTTTGTTTCTAAAATTCGAAAAATGGAATGCTCAACAACATGGTAGGGCTAAGTGGATAGAAAGTTTTGGAGGATGGATAAAAATCAAGAATTTACCTCTCTCTTTATGGAATAAGGAAAACTTTGAAGCCATAGGCAAGGAATGTGGTGGGCTCATTAGTATTTCTTTGGAAGCAATTAATTTGTTGAATTGGATTGAAGCTTCCATTGAGGTGAAAAAGAATCAATGTGGTTTCATTCCAGCTGAAGTTGTTGTTCATGATTCCATTCTTGGGGATGTTGTGGTCCAAATCTCTCCTTCAATTGGATGGGATCTTCTTCTAGAAGTGAAGAAAGATGAACAGTCTCACCATCTTTTAATGAAGAAAGATGTTAATCTTAATGTTACTACTTCCAATTGGAAGGAGATTGAAGGCTTGCATTATCACCATCACTTAATGAAGGAAGTCATGGAAGATGAAGGAGTTCCTACTTTTTCCAAGGTCCATGAATTAATTAGGCCGGTAGTTGAAAGTCTAAATGATAATGGGAAGGCTATGGATCCAGAACCTTCAGCAAATCTCATTCCTTTTGTCTCTCACGAAAAGTCCTCTCTTCTTAGCCCTCCTCCAAGCATTTATGACCCTTCTGTCCCACCTACCAAAGTTAATGCTTTTATTGATCAAGGTATGCATGAACAACCTCTTTTATTGCAGCAAGTTCTTGGAGAATCGAATAGTTTTAACCCTCCTTGTGAACCGTCCGCCTCTTTTAATGACTCCATTAATGTCAGCTCATTTGCTGCATTAGCCTCAAATCCTCCCCAGACAGCGCCTTTTGAGTTCTCAAAGACGTCTTTTGAAGCTTCCATTAAGACATTAGAGCTTTCAAAACCCTTGAGTGTTAAAAGAGAAAATTGTTCTCGACTCTTGGTTTCCTCTGCGAAGCATGTGAACATTAAGAAATCTTCATCAACAACTCCTTCACGAGCTCTAACTCCCAGCCTTCACGACCAAATTATTTCCTCTACAGATGGTTCTATTTTGTTAAAAGAAGTCGTCCACTCGACAAAAGTTCCTCCAACTTCTTTTTCTCATTTTCGATGTGATGACTCTGATGTGGAATCTGAAGTGAGTTTAAGTAGTGTGGATTCTTTAATGCAACCTATGGAAAATCACTTGGATGATGTTGAGCTTGAAGATTCTTTTACGGAAGCGTTTGATCTATTATTTCAGGAAAATGATAAGGATTGTGTTAAGGAAACGCCGCATCCTCCTCCATCCTTAGTGCATTGCAAATTTGCTTCCTTAATTGAAGCTAGTGGGCTCGAATTGCGAGAAATTCCTCCCTTGATATCAAAAGGAAACTCCTTTGAGCAGAGAGGAGTTGCTCTTCCTAATAGTTTCTTCTTTTTTCGTGAGCCAGAAATCAAGCTCTTTGGTTGGTTAAAGAGTGCTCTGCTGGAAGGCTATATTAGCACATCTATCAATGATGGTCCAGGATGTCTTATGTTGCGATGTCCAGATCCATCTTGTGGTGCTGCTGTTGGTCAAGATATGATAAATTTATTGGCTTCTGATGATGACAAAAAGAAGTACTTCCGCTATTTTGTTCGATCCTATGTTGAAGACAATAGGAAGACCAAATGGTGCCCCGCTCCAGGATGTGATTATGCTGTAGATTTTATAGTTGGAAGTGGAAGCTATGATGTCACTTGCAGATGCTCCTATAGCTTTTGCTGGAATGTGAGTTAG 2607 39.97 MGKKRKLEDEYTGESSFDIVHHVSMQNYIILAEADIRQRQEEDIMRVSTVLSISKVAASILLRYYNWSVSKVHDEWFADEEKVRRAVGLLEKPVLRHSNEVELPCGICFEIYSRDKIQSAACGHPFCNACWTGMRKICIICCGSDNLLTTFGIVGTWRSSFGVSRPRNREGLLEEVLLHPPFWEKGNLLCNEGKGDMHPLHSSRTTPTISLVLCLNPSLNDGNSIPAFSASVECKVEPFTKDWRYISEILKKEVSESCIINPFSADKALFKMKDFKGFAGRVLLDSWQKMGGLFLKFEKWNAQQHGRAKWIESFGGWIKIKNLPLSLWNKENFEAIGKECGGLISISLEAINLLNWIEASIEVKKNQCGFIPAEVVVHDSILGDVVVQISPSIGWDLLLEVKKDEQSHHLLMKKDVNLNVTTSNWKEIEGLHYHHHLMKEVMEDEGVPTFSKVHELIRPVVESLNDNGKAMDPEPSANLIPFVSHEKSSLLSPPPSIYDPSVPPTKVNAFIDQGMHEQPLLLQQVLGESNSFNPPCEPSASFNDSINVSSFAALASNPPQTAPFEFSKTSFEASIKTLELSKPLSVKRENCSRLLVSSAKHVNIKKSSSTTPSRALTPSLHDQIISSTDGSILLKEVVHSTKVPPTSFSHFRCDDSDVESEVSLSSVDSLMQPMENHLDDVELEDSFTEAFDLLFQENDKDCVKETPHPPPSLVHCKFASLIEASGLELREIPPLISKGNSFEQRGVALPNSFFFFREPEIKLFGWLKSALLEGYISTSINDGPGCLMLRCPDPSCGAAVGQDMINLLASDDDKKKYFRYFVRSYVEDNRKTKWCPAPGCDYAVDFIVGSGSYDVTCRCSYSFCWNVS 868
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 33162432 33175675 + Maker00003200 Lcy4g1363 630889

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy4g1363 868 Pfam IBR domain, a half RING-finger domain 815 866 IPR002867 GO:0008270(InterPro)
Lcy4g1363 868 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 773 866 IPR031127 GO:0000151(PANTHER)|GO:0000209(PANTHER)|GO:0004842(InterPro)|GO:0005737(PANTHER)|GO:0006511(PANTHER)|GO:0016567(InterPro)|GO:0031624(PANTHER)|GO:0032436(PANTHER)|GO:0061630(PANTHER)
Lcy4g1363 868 CDD BRcat_RBR_ANKIB1 822 866 - -
Lcy4g1363 868 SUPERFAMILY RING/U-box 773 824 - -
Lcy4g1363 868 SMART ibrneu5 815 866 IPR002867 GO:0008270(InterPro)
Lcy4g1363 868 ProSiteProfiles TRIAD supradomain profile. 734 868 IPR044066 -
Lcy4g1363 868 Pfam E3 ubiquitin-protein ligase ARIH1, UBA-like domain 38 77 IPR048962 -
Lcy4g1363 868 SUPERFAMILY RING/U-box 102 139 - -
Lcy4g1363 868 ProSiteProfiles Zinc finger RING-type profile. 105 141 IPR001841 -
Lcy4g1363 868 Pfam Domain of unknown function (DUF4283) 282 352 IPR025558 -
Lcy4g1363 868 SUPERFAMILY RING/U-box 816 866 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy4g1363 K11968 - - csv:101218052 214.542
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g1237 Lcy-Chr11:35248868 Lcy4g1363 Lcy-Chr4:33162432 1.19E-236 dispersed
Lcy2g1776 Lcy-Chr2:28567505 Lcy4g1363 Lcy-Chr4:33162432 1.37E-13 dispersed
Lcy4g1363 Lcy-Chr4:33162432 Lcy13g1039 Lcy-Chr13:22711472 2.73E-34 dispersed
Lcy11g1270 Lcy-Chr11:35933382 Lcy4g1363 Lcy-Chr4:33162432 5.63E-238 transposed
Lcy2g0915 Lcy-Chr2:8405046 Lcy4g1363 Lcy-Chr4:33162432 1.82E-08 transposed
Lcy2g1272 Lcy-Chr2:13609009 Lcy4g1363 Lcy-Chr4:33162432 4.49E-19 transposed
Lcy8g1087 Lcy-Chr8:36902164 Lcy4g1363 Lcy-Chr4:33162432 6.64E-07 transposed
Lcy1g2206 Lcy-Chr1:32155380 Lcy4g1363 Lcy-Chr4:33162432 6.87E-31 wgd
Lcy10g0291 Lcy-Chr10:5079115 Lcy4g1363 Lcy-Chr4:33162432 2.27E-28 wgd
Lcy2g1690 Lcy-Chr2:25340946 Lcy4g1363 Lcy-Chr4:33162432 3.77E-25 wgd
Lcy2g1633 Lcy-Chr2:23447147 Lcy4g1363 Lcy-Chr4:33162432 2.20E-69 wgd
Lcy2g2280 Lcy-Chr2:47614197 Lcy4g1363 Lcy-Chr4:33162432 7.49E-25 wgd
Lcy2g1578 Lcy-Chr2:21654718 Lcy4g1363 Lcy-Chr4:33162432 4.31E-30 wgd
Lcy3g0620 Lcy-Chr3:23257453 Lcy4g1363 Lcy-Chr4:33162432 3.65E-30 wgd
Lcy4g1363 Lcy-Chr4:33162432 Lcy5g0893 Lcy-Chr5:15013634 6.77E-30 wgd
Lcy4g1363 Lcy-Chr4:33162432 Lcy6g1899 Lcy-Chr6:39762699 4.20E-19 wgd
Lcy4g1363 Lcy-Chr4:33162432 Lcy6g1899 Lcy-Chr6:39762699 4.20E-19 wgd
Lcy4g1363 Lcy-Chr4:33162432 Lcy8g0350 Lcy-Chr8:10710205 2.36E-28 wgd
Lcy4g1363 Lcy-Chr4:33162432 Lcy8g0479 Lcy-Chr8:15584189 1.43E-31 wgd
Lcy4g1363 Lcy-Chr4:33162432 Lcy8g0749 Lcy-Chr8:27632928 4.28E-30 wgd
Lcy4g1363 Lcy-Chr4:33162432 Lcy9g0778 Lcy-Chr9:26271752 1.46E-26 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy8g1087 . 164 590 ARIADNE family AT4G34370 72.0 1.9e-183 639.4
Lcy8g1087 . 58 542 ARIADNE family AT2G16090 77.4 1.0e-225 780.0
Lcy8g1087 . 38 543 ARIADNE family AT3G27710 61.6 4.0e-183 638.6
Lcy8g1087 . 44 522 ARIADNE family AT3G27720 54.7 5.7e-144 508.4
Lcy3g1199 . 61 560 ARIADNE family AT1G05890 70.2 5.7e-215 744.6
Lcy4g1368 . 112 258 ARIADNE family AT1G05890 70.1 2.3e-54 211.1
Lcy4g1367 . 704 806 ARIADNE family AT1G05890 79.8 2.6e-50 197.6
Lcy4g1363 . 774 866 ARIADNE family AT1G05890 73.1 5.4e-40 163.3
Lcy3g1199 . 16 613 ARIADNE family AT1G65430 66.9 2.6e-241 832.0
Lcy4g1368 . 112 314 ARIADNE family AT1G65430 70.4 6.4e-75 279.3
Lcy4g1367 . 701 807 ARIADNE family AT1G65430 80.5 4.1e-53 206.8
Lcy4g1363 . 773 866 ARIADNE family AT1G65430 85.1 1.7e-46 184.9
Lcy4g1363 . 18 133 ARIADNE family AT1G65430 62.9 2.6e-39 161.0
Lcy3g1199 . 58 479 ARIADNE family AT2G31780 54.7 1.3e-139 493.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0015861 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 3 0 0 0 0 0 5