Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy4g1363 ATGGGAAAGAAAAGGAAACTTGAGGATGAGTATACAGGAGAGAGTAGCTTTGATATTGTTCATCATGTCTCTATGCAAAACTATATAATCTTGGCCGAGGCAGATATACGGCAGCGACAGGAGGAAGACATCATGAGAGTGTCCACTGTTCTTTCTATTTCAAAAGTAGCAGCTAGCATCCTGCTCCGATATTACAACTGGAGTGTCAGTAAAGTGCATGATGAATGGTTTGCGGATGAAGAAAAGGTCCGTAGAGCTGTTGGCTTATTAGAAAAACCAGTTTTGCGACATTCAAATGAAGTAGAACTACCTTGCGGTATATGTTTTGAAATCTATTCACGTGATAAGATTCAGTCTGCTGCTTGTGGCCATCCATTTTGCAATGCGTGTTGGACAGGCATGAGGAAGATTTGTATCATTTGCTGTGGGAGTGACAATTTGCTAACTACCTTTGGGATTGTTGGAACTTGGAGGAGTTCATTTGGTGTTAGTAGGCCGCGTAATAGAGAAGGGCTGTTGGAGGAGGTGCTTTTGCATCCTCCCTTTTGGGAGAAAGGCAATTTGTTGTGCAATGAAGGTAAAGGTGATATGCATCCACTTCATTCATCTCGCACCACACCAACTATATCTCTTGTTCTTTGTCTTAATCCAAGCCTCAATGATGGCAATAGCATCCCGGCCTTTTCAGCTTCTGTGGAATGCAAGGTGGAGCCTTTTACTAAGGATTGGAGGTATATTTCTGAAATTTTGAAGAAAGAAGTTTCTGAAAGTTGTATAATCAATCCATTTTCTGCCGATAAAGCTTTGTTTAAAATGAAGGATTTTAAAGGGTTTGCTGGTAGAGTACTTCTTGATTCATGGCAAAAGATGGGAGGTTTGTTTCTAAAATTCGAAAAATGGAATGCTCAACAACATGGTAGGGCTAAGTGGATAGAAAGTTTTGGAGGATGGATAAAAATCAAGAATTTACCTCTCTCTTTATGGAATAAGGAAAACTTTGAAGCCATAGGCAAGGAATGTGGTGGGCTCATTAGTATTTCTTTGGAAGCAATTAATTTGTTGAATTGGATTGAAGCTTCCATTGAGGTGAAAAAGAATCAATGTGGTTTCATTCCAGCTGAAGTTGTTGTTCATGATTCCATTCTTGGGGATGTTGTGGTCCAAATCTCTCCTTCAATTGGATGGGATCTTCTTCTAGAAGTGAAGAAAGATGAACAGTCTCACCATCTTTTAATGAAGAAAGATGTTAATCTTAATGTTACTACTTCCAATTGGAAGGAGATTGAAGGCTTGCATTATCACCATCACTTAATGAAGGAAGTCATGGAAGATGAAGGAGTTCCTACTTTTTCCAAGGTCCATGAATTAATTAGGCCGGTAGTTGAAAGTCTAAATGATAATGGGAAGGCTATGGATCCAGAACCTTCAGCAAATCTCATTCCTTTTGTCTCTCACGAAAAGTCCTCTCTTCTTAGCCCTCCTCCAAGCATTTATGACCCTTCTGTCCCACCTACCAAAGTTAATGCTTTTATTGATCAAGGTATGCATGAACAACCTCTTTTATTGCAGCAAGTTCTTGGAGAATCGAATAGTTTTAACCCTCCTTGTGAACCGTCCGCCTCTTTTAATGACTCCATTAATGTCAGCTCATTTGCTGCATTAGCCTCAAATCCTCCCCAGACAGCGCCTTTTGAGTTCTCAAAGACGTCTTTTGAAGCTTCCATTAAGACATTAGAGCTTTCAAAACCCTTGAGTGTTAAAAGAGAAAATTGTTCTCGACTCTTGGTTTCCTCTGCGAAGCATGTGAACATTAAGAAATCTTCATCAACAACTCCTTCACGAGCTCTAACTCCCAGCCTTCACGACCAAATTATTTCCTCTACAGATGGTTCTATTTTGTTAAAAGAAGTCGTCCACTCGACAAAAGTTCCTCCAACTTCTTTTTCTCATTTTCGATGTGATGACTCTGATGTGGAATCTGAAGTGAGTTTAAGTAGTGTGGATTCTTTAATGCAACCTATGGAAAATCACTTGGATGATGTTGAGCTTGAAGATTCTTTTACGGAAGCGTTTGATCTATTATTTCAGGAAAATGATAAGGATTGTGTTAAGGAAACGCCGCATCCTCCTCCATCCTTAGTGCATTGCAAATTTGCTTCCTTAATTGAAGCTAGTGGGCTCGAATTGCGAGAAATTCCTCCCTTGATATCAAAAGGAAACTCCTTTGAGCAGAGAGGAGTTGCTCTTCCTAATAGTTTCTTCTTTTTTCGTGAGCCAGAAATCAAGCTCTTTGGTTGGTTAAAGAGTGCTCTGCTGGAAGGCTATATTAGCACATCTATCAATGATGGTCCAGGATGTCTTATGTTGCGATGTCCAGATCCATCTTGTGGTGCTGCTGTTGGTCAAGATATGATAAATTTATTGGCTTCTGATGATGACAAAAAGAAGTACTTCCGCTATTTTGTTCGATCCTATGTTGAAGACAATAGGAAGACCAAATGGTGCCCCGCTCCAGGATGTGATTATGCTGTAGATTTTATAGTTGGAAGTGGAAGCTATGATGTCACTTGCAGATGCTCCTATAGCTTTTGCTGGAATGTGAGTTAG 2607 39.97 MGKKRKLEDEYTGESSFDIVHHVSMQNYIILAEADIRQRQEEDIMRVSTVLSISKVAASILLRYYNWSVSKVHDEWFADEEKVRRAVGLLEKPVLRHSNEVELPCGICFEIYSRDKIQSAACGHPFCNACWTGMRKICIICCGSDNLLTTFGIVGTWRSSFGVSRPRNREGLLEEVLLHPPFWEKGNLLCNEGKGDMHPLHSSRTTPTISLVLCLNPSLNDGNSIPAFSASVECKVEPFTKDWRYISEILKKEVSESCIINPFSADKALFKMKDFKGFAGRVLLDSWQKMGGLFLKFEKWNAQQHGRAKWIESFGGWIKIKNLPLSLWNKENFEAIGKECGGLISISLEAINLLNWIEASIEVKKNQCGFIPAEVVVHDSILGDVVVQISPSIGWDLLLEVKKDEQSHHLLMKKDVNLNVTTSNWKEIEGLHYHHHLMKEVMEDEGVPTFSKVHELIRPVVESLNDNGKAMDPEPSANLIPFVSHEKSSLLSPPPSIYDPSVPPTKVNAFIDQGMHEQPLLLQQVLGESNSFNPPCEPSASFNDSINVSSFAALASNPPQTAPFEFSKTSFEASIKTLELSKPLSVKRENCSRLLVSSAKHVNIKKSSSTTPSRALTPSLHDQIISSTDGSILLKEVVHSTKVPPTSFSHFRCDDSDVESEVSLSSVDSLMQPMENHLDDVELEDSFTEAFDLLFQENDKDCVKETPHPPPSLVHCKFASLIEASGLELREIPPLISKGNSFEQRGVALPNSFFFFREPEIKLFGWLKSALLEGYISTSINDGPGCLMLRCPDPSCGAAVGQDMINLLASDDDKKKYFRYFVRSYVEDNRKTKWCPAPGCDYAVDFIVGSGSYDVTCRCSYSFCWNVS 868
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 33162432 33175675 + Maker00003200 Lcy4g1363 630889
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy4g1363 868 Pfam IBR domain, a half RING-finger domain 815 866 IPR002867 GO:0008270(InterPro)
Lcy4g1363 868 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 773 866 IPR031127 GO:0000151(PANTHER)|GO:0000209(PANTHER)|GO:0004842(InterPro)|GO:0005737(PANTHER)|GO:0006511(PANTHER)|GO:0016567(InterPro)|GO:0031624(PANTHER)|GO:0032436(PANTHER)|GO:0061630(PANTHER)
Lcy4g1363 868 CDD BRcat_RBR_ANKIB1 822 866 - -
Lcy4g1363 868 SUPERFAMILY RING/U-box 773 824 - -
Lcy4g1363 868 SMART ibrneu5 815 866 IPR002867 GO:0008270(InterPro)
Lcy4g1363 868 ProSiteProfiles TRIAD supradomain profile. 734 868 IPR044066 -
Lcy4g1363 868 Pfam E3 ubiquitin-protein ligase ARIH1, UBA-like domain 38 77 IPR048962 -
Lcy4g1363 868 SUPERFAMILY RING/U-box 102 139 - -
Lcy4g1363 868 ProSiteProfiles Zinc finger RING-type profile. 105 141 IPR001841 -
Lcy4g1363 868 Pfam Domain of unknown function (DUF4283) 282 352 IPR025558 -
Lcy4g1363 868 SUPERFAMILY RING/U-box 816 866 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g1237 Lcy-Chr11:35248868 Lcy4g1363 Lcy-Chr4:33162432 1.19E-236 dispersed
Lcy2g1776 Lcy-Chr2:28567505 Lcy4g1363 Lcy-Chr4:33162432 1.37E-13 dispersed
Lcy4g1363 Lcy-Chr4:33162432 Lcy13g1039 Lcy-Chr13:22711472 2.73E-34 dispersed
Lcy11g1270 Lcy-Chr11:35933382 Lcy4g1363 Lcy-Chr4:33162432 5.63E-238 transposed
Lcy2g0915 Lcy-Chr2:8405046 Lcy4g1363 Lcy-Chr4:33162432 1.82E-08 transposed
Lcy2g1272 Lcy-Chr2:13609009 Lcy4g1363 Lcy-Chr4:33162432 4.49E-19 transposed
Lcy8g1087 Lcy-Chr8:36902164 Lcy4g1363 Lcy-Chr4:33162432 6.64E-07 transposed
Lcy1g2206 Lcy-Chr1:32155380 Lcy4g1363 Lcy-Chr4:33162432 6.87E-31 wgd
Lcy10g0291 Lcy-Chr10:5079115 Lcy4g1363 Lcy-Chr4:33162432 2.27E-28 wgd
Lcy2g1690 Lcy-Chr2:25340946 Lcy4g1363 Lcy-Chr4:33162432 3.77E-25 wgd
Lcy2g1633 Lcy-Chr2:23447147 Lcy4g1363 Lcy-Chr4:33162432 2.20E-69 wgd
Lcy2g2280 Lcy-Chr2:47614197 Lcy4g1363 Lcy-Chr4:33162432 7.49E-25 wgd
Lcy2g1578 Lcy-Chr2:21654718 Lcy4g1363 Lcy-Chr4:33162432 4.31E-30 wgd
Lcy3g0620 Lcy-Chr3:23257453 Lcy4g1363 Lcy-Chr4:33162432 3.65E-30 wgd
Lcy4g1363 Lcy-Chr4:33162432 Lcy5g0893 Lcy-Chr5:15013634 6.77E-30 wgd
Lcy4g1363 Lcy-Chr4:33162432 Lcy6g1899 Lcy-Chr6:39762699 4.20E-19 wgd
Lcy4g1363 Lcy-Chr4:33162432 Lcy6g1899 Lcy-Chr6:39762699 4.20E-19 wgd
Lcy4g1363 Lcy-Chr4:33162432 Lcy8g0350 Lcy-Chr8:10710205 2.36E-28 wgd
Lcy4g1363 Lcy-Chr4:33162432 Lcy8g0479 Lcy-Chr8:15584189 1.43E-31 wgd
Lcy4g1363 Lcy-Chr4:33162432 Lcy8g0749 Lcy-Chr8:27632928 4.28E-30 wgd
Lcy4g1363 Lcy-Chr4:33162432 Lcy9g0778 Lcy-Chr9:26271752 1.46E-26 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy4g1363 K11968 - csv:101218052 214.542