Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy4g1367 ATGAACAAAGGTTGGGTCAGCTTTGGACCAGCCATCTTGAAAGCTGAAAAATGGAACATTAAATTTCACTCCCGAATCTCCTGTGTGCCGAGCTATGGGGGATGGATTAAATTAAGGAATCTTCCTCTGCATTTATGGCGTCTCAGCATTTTTAAAGCGATTGGCGATTGTCTTGGTGGGTTTATTGAATATGAAGAAAGCAACTCCTTGCTCATTGATTGCGTGGAAGTGAAAATGAAAGTCAGAGACAATTATTGTGGTTTTCTACCGACGGGAATAAGGATTGTAGATGGTGAAGAGCTGTTTAATGTTCAAGTGGTAACTTACCAAGAGGGCACCATGCTACTAGAAAGGATTGTCGGAATACATGGGAGTTTCTCGCCGGAGGCCGCTCATGCTTTCCACAGAGGACCGAATGACCCTTTCTTTTGTCCGGCGGATATATGGAGAATCGGAAATGGATGCAATTATCCAATGGTTAATGTCCAAGAGATAACTGAGGAGGTGTCTGACAGTGGGCAACAACTGTCTAGCATTGAAAGGCAAGCCCATTATGGGAGGAGCAATTCAGAAAATAGCCCATCTGTTAAAGTGTACAAGAGAAAAGGTGTCTCCTTCATCAATAAAAATCAAGTTACCACCTTTACAAGAGGGGACATACAACGCACGGACAAAATTGAAAGCCCACCAAGAATGGAGGACACGTCGAACGAGTGGATGGGAGATATGGGCATGGAATCGGATCCATCTATGTCCAGCCCAGGGAGCAAAGTTCCGGAAGATGTGGTTGAAGAAAGCCCAAATCTCTATGAAGACCACGAGGACTTGGTTCTGGAAGATTACCAACGACTTTTTGAAGCCGATAAGGAGCTTCACAGACGCACCCAAACTCGGCAGCTCACAAGTAAGAATTCTCAATCCCCCCTTCTTCCCCCTCACGTCTGTAGTGCTGATGATAGACATGAAATGGAAGCGGCTGGTTACCCACATTGCGAGTCCAATCTGCAAGAATACGACAGGATTGAAGAAGTGAGTGTAGAAACTCCAAAGGCATTGGCTATCATACAGCCGACTAGGGATGAGTGTTTTGATAAAGATAACGCGAAAGATAGAGGTTTTGCCGAGGGTTTTTCGATTAGTAAAGAAATAGTGTTGACTTTGAGGAAAAATAACCTGTGTATTAGGCCGATAGCTGGGTCCAGTAGCAAAAAGGGCAATTCAACCCAGAAGAAACGAAATAGGGAGGTAACCAATCTCTTGAGATCTTGGGAGAAGGAAGCCGAGTTCCATTCTAATAAATTAGATGAGATTGAGGAAGAGCAGAGTAGTGATAGTAGAGTAGAACGGGCTGAGATTGTTAATCCCGATATAGTCATTTTGCAAGAGTCCAAGTTGAATCAGATTGATAGAAGGTTGGTAAAATCCATTTGGAGTTCCAATGTGTGGTTGGCTTTGAATGCCATCAATTCAGCTGGTGGGGGCTTGGGCGTTGGCTCCCTTGCTCAAAGGAATGTGGCGCTCATGTCGAAATGGCTGTGGAGGTTCTCTAAGGAAGATGATTCGCTGTGGAAAAAGATTATTGTGAGTATTTATGGGCTCTCCCCTTGCGGGCGGAAAACCATCCAGTTTAAAGGCAAAAAAGGAAATCGGATTTGGGTAGATATAGCTGCCAACTACCACACTTTTGATCCTTGTGTCAAACTCACGGTCAACAACGGTAGATGCATAAAATTCTGGGAGGATGGCTGGTGTGATGACCAACCCCTCAAGACCCTTTACCCGGACCTATACATCATCTCTAATAAAAAAGGGGCAACCGTGGCTGATTGTTGGAAGGCTGAGTCTCTAACTTGGGATTTGGATTTTAGAAGGTTCCTTTTTGAAAGAGAGATTCCTAGTTGGTTGGCCTTGCTGGACAAAATTAAGGATGTGAGGCTGCTGGACGAGCAAGACCACTTGAGTTGGAAGTTGGAGAAGTCAGGTGGGGAGGAGCGGAAATGTCTAAGAGAGTGCTTTGTGAAAGAATCGTGTGGCGTGGACCGCGGTGATAGGTTTCCTGTTGGGGTTTCCAGCCCCTCTCCCCTGGCTCCTAATATCCAGGTAGTGACGTGGCTACTGAAATCACTTTTGTTGATATTGGCAAATTCCAAACCTTGCCCAAAATGCAAACGGCCTATTGAGAAAAATCAAGGGTGCATGCATATTACTTGCACACCACCTTGTAAATTTGAGTTCTGCTGGCTTTGCCTTGGTCCATGGTCTGATCATGGAGAGAGGACTGGAGGATTTTATGCATGTAACCGCTATGAAACTGCAAAGCAAGAGGGAGTGTATGATGATGCTGAAAAACGCAGAGAGATGGCCAAGAATTCTCTGGAGAGGTACACTCATTATTATGAAAGATGGGCTACCAACCAATCGATCTTGGAGCCTTTCCCAACCAAGGATTTCACAAACCGGGAGAAAAGAGGGAAACACAAGGCAACAGCTGTTTGGAGAAAGTGGTGGAGAAATCTACCTGAAAAGGAGCATGTTGGGTCAAGAGGCCACTGCCAAGAGTCTGGTTGGAGTTTAAGCCTCAAGCCCTCGGTGTTGCTGATCAGGAGCCAATCTTCTAACTCATCTTCCTTTAGATTTCTCCTAAAAGATGTTCCTGGAGCTAATGTTGCCCTCTGA 2676 45.14 MNKGWVSFGPAILKAEKWNIKFHSRISCVPSYGGWIKLRNLPLHLWRLSIFKAIGDCLGGFIEYEESNSLLIDCVEVKMKVRDNYCGFLPTGIRIVDGEELFNVQVVTYQEGTMLLERIVGIHGSFSPEAAHAFHRGPNDPFFCPADIWRIGNGCNYPMVNVQEITEEVSDSGQQLSSIERQAHYGRSNSENSPSVKVYKRKGVSFINKNQVTTFTRGDIQRTDKIESPPRMEDTSNEWMGDMGMESDPSMSSPGSKVPEDVVEESPNLYEDHEDLVLEDYQRLFEADKELHRRTQTRQLTSKNSQSPLLPPHVCSADDRHEMEAAGYPHCESNLQEYDRIEEVSVETPKALAIIQPTRDECFDKDNAKDRGFAEGFSISKEIVLTLRKNNLCIRPIAGSSSKKGNSTQKKRNREVTNLLRSWEKEAEFHSNKLDEIEEEQSSDSRVERAEIVNPDIVILQESKLNQIDRRLVKSIWSSNVWLALNAINSAGGGLGVGSLAQRNVALMSKWLWRFSKEDDSLWKKIIVSIYGLSPCGRKTIQFKGKKGNRIWVDIAANYHTFDPCVKLTVNNGRCIKFWEDGWCDDQPLKTLYPDLYIISNKKGATVADCWKAESLTWDLDFRRFLFEREIPSWLALLDKIKDVRLLDEQDHLSWKLEKSGGEERKCLRECFVKESCGVDRGDRFPVGVSSPSPLAPNIQVVTWLLKSLLLILANSKPCPKCKRPIEKNQGCMHITCTPPCKFEFCWLCLGPWSDHGERTGGFYACNRYETAKQEGVYDDAEKRREMAKNSLERYTHYYERWATNQSILEPFPTKDFTNREKRGKHKATAVWRKWWRNLPEKEHVGSRGHCQESGWSLSLKPSVLLIRSQSSNSSSFRFLLKDVPGANVAL 891
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 33195452 33206782 + Maker00003133 Lcy4g1367 630893

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy4g1367 891 Pfam IBR domain 714 754 - -
Lcy4g1367 891 ProSiteProfiles TRIAD supradomain profile. 549 770 IPR044066 -
Lcy4g1367 891 Coils Coil 413 440 - -
Lcy4g1367 891 ProSitePatterns AP endonucleases family 1 signature 1. 455 464 IPR020847 GO:0003677(InterPro)|GO:0004519(InterPro)|GO:0006281(InterPro)
Lcy4g1367 891 Coils Coil 162 182 - -
Lcy4g1367 891 Pfam Domain of unknown function (DUF4283) 2 72 IPR025558 -
Lcy4g1367 891 CDD Rcat_RBR_ARI7-like 715 769 - -
Lcy4g1367 891 Gene3D - 702 845 - -
Lcy4g1367 891 PANTHER PROTEIN, PUTATIVE-RELATED 539 674 - -
Lcy4g1367 891 SUPERFAMILY RING/U-box 703 770 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy4g1367 K11968 - - csv:101218052 220.32
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy3g1199 Lcy-Chr3:37333970 Lcy4g1367 Lcy-Chr4:33195452 2.64E-57 dispersed
Lcy4g1367 Lcy-Chr4:33195452 Lcy9g1209 Lcy-Chr9:36472730 1.60E-220 dispersed
Lcy8g1216 Lcy-Chr8:38525543 Lcy4g1367 Lcy-Chr4:33195452 1.12E-69 transposed
Lcy1g2049 Lcy-Chr1:27162390 Lcy4g1367 Lcy-Chr4:33195452 1.97E-28 wgd
Lcy10g0426 Lcy-Chr10:9229665 Lcy4g1367 Lcy-Chr4:33195452 2.81E-29 wgd
Lcy11g0391 Lcy-Chr11:6865065 Lcy4g1367 Lcy-Chr4:33195452 1.10E-16 wgd
Lcy11g1012 Lcy-Chr11:30935024 Lcy4g1367 Lcy-Chr4:33195452 6.09E-28 wgd
Lcy12g1059 Lcy-Chr12:18333554 Lcy4g1367 Lcy-Chr4:33195452 5.18E-26 wgd
Lcy13g1158 Lcy-Chr13:26843221 Lcy4g1367 Lcy-Chr4:33195452 2.21E-17 wgd
Lcy13g0854 Lcy-Chr13:14846649 Lcy4g1367 Lcy-Chr4:33195452 9.15E-09 wgd
Lcy13g0888 Lcy-Chr13:15473558 Lcy4g1367 Lcy-Chr4:33195452 6.12E-52 wgd
Lcy2g1510 Lcy-Chr2:19191047 Lcy4g1367 Lcy-Chr4:33195452 9.14E-85 wgd
Lcy3g0463 Lcy-Chr3:16394619 Lcy4g1367 Lcy-Chr4:33195452 1.39E-31 wgd
Lcy4g1367 Lcy-Chr4:33195452 Lcy9g0708 Lcy-Chr9:24130623 7.38E-21 wgd
Lcy4g1367 Lcy-Chr4:33195452 Lcy9g0695 Lcy-Chr9:23779616 1.40E-79 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy8g1087 . 164 590 ARIADNE family AT4G34370 72.0 1.9e-183 639.4
Lcy8g1087 . 58 542 ARIADNE family AT2G16090 77.4 1.0e-225 780.0
Lcy8g1087 . 38 543 ARIADNE family AT3G27710 61.6 4.0e-183 638.6
Lcy8g1087 . 44 522 ARIADNE family AT3G27720 54.7 5.7e-144 508.4
Lcy3g1199 . 61 560 ARIADNE family AT1G05890 70.2 5.7e-215 744.6
Lcy4g1368 . 112 258 ARIADNE family AT1G05890 70.1 2.3e-54 211.1
Lcy4g1367 . 704 806 ARIADNE family AT1G05890 79.8 2.6e-50 197.6
Lcy4g1363 . 774 866 ARIADNE family AT1G05890 73.1 5.4e-40 163.3
Lcy3g1199 . 16 613 ARIADNE family AT1G65430 66.9 2.6e-241 832.0
Lcy4g1368 . 112 314 ARIADNE family AT1G65430 70.4 6.4e-75 279.3
Lcy4g1367 . 701 807 ARIADNE family AT1G65430 80.5 4.1e-53 206.8
Lcy4g1363 . 773 866 ARIADNE family AT1G65430 85.1 1.7e-46 184.9
Lcy4g1363 . 18 133 ARIADNE family AT1G65430 62.9 2.6e-39 161.0
Lcy3g1199 . 58 479 ARIADNE family AT2G31780 54.7 1.3e-139 493.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000353 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 2 15 40 0 1 1 0 0 61