Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy4g1367 ATGAACAAAGGTTGGGTCAGCTTTGGACCAGCCATCTTGAAAGCTGAAAAATGGAACATTAAATTTCACTCCCGAATCTCCTGTGTGCCGAGCTATGGGGGATGGATTAAATTAAGGAATCTTCCTCTGCATTTATGGCGTCTCAGCATTTTTAAAGCGATTGGCGATTGTCTTGGTGGGTTTATTGAATATGAAGAAAGCAACTCCTTGCTCATTGATTGCGTGGAAGTGAAAATGAAAGTCAGAGACAATTATTGTGGTTTTCTACCGACGGGAATAAGGATTGTAGATGGTGAAGAGCTGTTTAATGTTCAAGTGGTAACTTACCAAGAGGGCACCATGCTACTAGAAAGGATTGTCGGAATACATGGGAGTTTCTCGCCGGAGGCCGCTCATGCTTTCCACAGAGGACCGAATGACCCTTTCTTTTGTCCGGCGGATATATGGAGAATCGGAAATGGATGCAATTATCCAATGGTTAATGTCCAAGAGATAACTGAGGAGGTGTCTGACAGTGGGCAACAACTGTCTAGCATTGAAAGGCAAGCCCATTATGGGAGGAGCAATTCAGAAAATAGCCCATCTGTTAAAGTGTACAAGAGAAAAGGTGTCTCCTTCATCAATAAAAATCAAGTTACCACCTTTACAAGAGGGGACATACAACGCACGGACAAAATTGAAAGCCCACCAAGAATGGAGGACACGTCGAACGAGTGGATGGGAGATATGGGCATGGAATCGGATCCATCTATGTCCAGCCCAGGGAGCAAAGTTCCGGAAGATGTGGTTGAAGAAAGCCCAAATCTCTATGAAGACCACGAGGACTTGGTTCTGGAAGATTACCAACGACTTTTTGAAGCCGATAAGGAGCTTCACAGACGCACCCAAACTCGGCAGCTCACAAGTAAGAATTCTCAATCCCCCCTTCTTCCCCCTCACGTCTGTAGTGCTGATGATAGACATGAAATGGAAGCGGCTGGTTACCCACATTGCGAGTCCAATCTGCAAGAATACGACAGGATTGAAGAAGTGAGTGTAGAAACTCCAAAGGCATTGGCTATCATACAGCCGACTAGGGATGAGTGTTTTGATAAAGATAACGCGAAAGATAGAGGTTTTGCCGAGGGTTTTTCGATTAGTAAAGAAATAGTGTTGACTTTGAGGAAAAATAACCTGTGTATTAGGCCGATAGCTGGGTCCAGTAGCAAAAAGGGCAATTCAACCCAGAAGAAACGAAATAGGGAGGTAACCAATCTCTTGAGATCTTGGGAGAAGGAAGCCGAGTTCCATTCTAATAAATTAGATGAGATTGAGGAAGAGCAGAGTAGTGATAGTAGAGTAGAACGGGCTGAGATTGTTAATCCCGATATAGTCATTTTGCAAGAGTCCAAGTTGAATCAGATTGATAGAAGGTTGGTAAAATCCATTTGGAGTTCCAATGTGTGGTTGGCTTTGAATGCCATCAATTCAGCTGGTGGGGGCTTGGGCGTTGGCTCCCTTGCTCAAAGGAATGTGGCGCTCATGTCGAAATGGCTGTGGAGGTTCTCTAAGGAAGATGATTCGCTGTGGAAAAAGATTATTGTGAGTATTTATGGGCTCTCCCCTTGCGGGCGGAAAACCATCCAGTTTAAAGGCAAAAAAGGAAATCGGATTTGGGTAGATATAGCTGCCAACTACCACACTTTTGATCCTTGTGTCAAACTCACGGTCAACAACGGTAGATGCATAAAATTCTGGGAGGATGGCTGGTGTGATGACCAACCCCTCAAGACCCTTTACCCGGACCTATACATCATCTCTAATAAAAAAGGGGCAACCGTGGCTGATTGTTGGAAGGCTGAGTCTCTAACTTGGGATTTGGATTTTAGAAGGTTCCTTTTTGAAAGAGAGATTCCTAGTTGGTTGGCCTTGCTGGACAAAATTAAGGATGTGAGGCTGCTGGACGAGCAAGACCACTTGAGTTGGAAGTTGGAGAAGTCAGGTGGGGAGGAGCGGAAATGTCTAAGAGAGTGCTTTGTGAAAGAATCGTGTGGCGTGGACCGCGGTGATAGGTTTCCTGTTGGGGTTTCCAGCCCCTCTCCCCTGGCTCCTAATATCCAGGTAGTGACGTGGCTACTGAAATCACTTTTGTTGATATTGGCAAATTCCAAACCTTGCCCAAAATGCAAACGGCCTATTGAGAAAAATCAAGGGTGCATGCATATTACTTGCACACCACCTTGTAAATTTGAGTTCTGCTGGCTTTGCCTTGGTCCATGGTCTGATCATGGAGAGAGGACTGGAGGATTTTATGCATGTAACCGCTATGAAACTGCAAAGCAAGAGGGAGTGTATGATGATGCTGAAAAACGCAGAGAGATGGCCAAGAATTCTCTGGAGAGGTACACTCATTATTATGAAAGATGGGCTACCAACCAATCGATCTTGGAGCCTTTCCCAACCAAGGATTTCACAAACCGGGAGAAAAGAGGGAAACACAAGGCAACAGCTGTTTGGAGAAAGTGGTGGAGAAATCTACCTGAAAAGGAGCATGTTGGGTCAAGAGGCCACTGCCAAGAGTCTGGTTGGAGTTTAAGCCTCAAGCCCTCGGTGTTGCTGATCAGGAGCCAATCTTCTAACTCATCTTCCTTTAGATTTCTCCTAAAAGATGTTCCTGGAGCTAATGTTGCCCTCTGA 2676 45.14 MNKGWVSFGPAILKAEKWNIKFHSRISCVPSYGGWIKLRNLPLHLWRLSIFKAIGDCLGGFIEYEESNSLLIDCVEVKMKVRDNYCGFLPTGIRIVDGEELFNVQVVTYQEGTMLLERIVGIHGSFSPEAAHAFHRGPNDPFFCPADIWRIGNGCNYPMVNVQEITEEVSDSGQQLSSIERQAHYGRSNSENSPSVKVYKRKGVSFINKNQVTTFTRGDIQRTDKIESPPRMEDTSNEWMGDMGMESDPSMSSPGSKVPEDVVEESPNLYEDHEDLVLEDYQRLFEADKELHRRTQTRQLTSKNSQSPLLPPHVCSADDRHEMEAAGYPHCESNLQEYDRIEEVSVETPKALAIIQPTRDECFDKDNAKDRGFAEGFSISKEIVLTLRKNNLCIRPIAGSSSKKGNSTQKKRNREVTNLLRSWEKEAEFHSNKLDEIEEEQSSDSRVERAEIVNPDIVILQESKLNQIDRRLVKSIWSSNVWLALNAINSAGGGLGVGSLAQRNVALMSKWLWRFSKEDDSLWKKIIVSIYGLSPCGRKTIQFKGKKGNRIWVDIAANYHTFDPCVKLTVNNGRCIKFWEDGWCDDQPLKTLYPDLYIISNKKGATVADCWKAESLTWDLDFRRFLFEREIPSWLALLDKIKDVRLLDEQDHLSWKLEKSGGEERKCLRECFVKESCGVDRGDRFPVGVSSPSPLAPNIQVVTWLLKSLLLILANSKPCPKCKRPIEKNQGCMHITCTPPCKFEFCWLCLGPWSDHGERTGGFYACNRYETAKQEGVYDDAEKRREMAKNSLERYTHYYERWATNQSILEPFPTKDFTNREKRGKHKATAVWRKWWRNLPEKEHVGSRGHCQESGWSLSLKPSVLLIRSQSSNSSSFRFLLKDVPGANVAL 891
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 33195452 33206782 + Maker00003133 Lcy4g1367 630893
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy4g1367 891 Pfam IBR domain 714 754 - -
Lcy4g1367 891 ProSiteProfiles TRIAD supradomain profile. 549 770 IPR044066 -
Lcy4g1367 891 Coils Coil 413 440 - -
Lcy4g1367 891 ProSitePatterns AP endonucleases family 1 signature 1. 455 464 IPR020847 GO:0003677(InterPro)|GO:0004519(InterPro)|GO:0006281(InterPro)
Lcy4g1367 891 Coils Coil 162 182 - -
Lcy4g1367 891 Pfam Domain of unknown function (DUF4283) 2 72 IPR025558 -
Lcy4g1367 891 CDD Rcat_RBR_ARI7-like 715 769 - -
Lcy4g1367 891 Gene3D - 702 845 - -
Lcy4g1367 891 PANTHER PROTEIN, PUTATIVE-RELATED 539 674 - -
Lcy4g1367 891 SUPERFAMILY RING/U-box 703 770 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy3g1199 Lcy-Chr3:37333970 Lcy4g1367 Lcy-Chr4:33195452 2.64E-57 dispersed
Lcy4g1367 Lcy-Chr4:33195452 Lcy9g1209 Lcy-Chr9:36472730 1.60E-220 dispersed
Lcy8g1216 Lcy-Chr8:38525543 Lcy4g1367 Lcy-Chr4:33195452 1.12E-69 transposed
Lcy1g2049 Lcy-Chr1:27162390 Lcy4g1367 Lcy-Chr4:33195452 1.97E-28 wgd
Lcy10g0426 Lcy-Chr10:9229665 Lcy4g1367 Lcy-Chr4:33195452 2.81E-29 wgd
Lcy11g0391 Lcy-Chr11:6865065 Lcy4g1367 Lcy-Chr4:33195452 1.10E-16 wgd
Lcy11g1012 Lcy-Chr11:30935024 Lcy4g1367 Lcy-Chr4:33195452 6.09E-28 wgd
Lcy12g1059 Lcy-Chr12:18333554 Lcy4g1367 Lcy-Chr4:33195452 5.18E-26 wgd
Lcy13g1158 Lcy-Chr13:26843221 Lcy4g1367 Lcy-Chr4:33195452 2.21E-17 wgd
Lcy13g0854 Lcy-Chr13:14846649 Lcy4g1367 Lcy-Chr4:33195452 9.15E-09 wgd
Lcy13g0888 Lcy-Chr13:15473558 Lcy4g1367 Lcy-Chr4:33195452 6.12E-52 wgd
Lcy2g1510 Lcy-Chr2:19191047 Lcy4g1367 Lcy-Chr4:33195452 9.14E-85 wgd
Lcy3g0463 Lcy-Chr3:16394619 Lcy4g1367 Lcy-Chr4:33195452 1.39E-31 wgd
Lcy4g1367 Lcy-Chr4:33195452 Lcy9g0708 Lcy-Chr9:24130623 7.38E-21 wgd
Lcy4g1367 Lcy-Chr4:33195452 Lcy9g0695 Lcy-Chr9:23779616 1.40E-79 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy4g1367 K11968 - csv:101218052 220.32