Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lcy4g1368 | ATGCAATGCGCTAACTTGCTCTACTTAGATAGTTTCACATGCGTTACCTGTCAGGGATTTATCATGCTGCTACCGCATCCAGCTGGCCAGGCGGGAGTTAATAAACCTGTCACCGCATGGGTGCCTAAGCTAAGCCTTGATAAAAGTAAATTAGCTCAGGCTGAGACAGAAAAACACAACTTGGGCGCTTCTTATAGGCTGAGGAGGCTAACTTCTCCAAGAAATTGGCTTGCGTGCCCCAGTCATCTTTCGCTAGCTAGCACATCAGTCACACGTCAGCGTGATCATCTCTTCCAGCTTTCATCGTACGAACTACTCTGGGATCTGCGCCTGCAAAAGGCACTTGCAGATCTTCATCAAATGCAAACCGTGCATCTGGAAAAATTAAGTGATATTCAGTGCCAACCTGAGTCGCAGCTAAAGTTCATAAGCGAAGCATGGCTACAGATTGTAGAGTGTAGGCGAGTTCTGAAATGGACTTATGCCTATGGATATTATCTACCTGAGCGTGAACATGCCAAGAGACAGTTCTTTGAGTACTTGCAAGGTGAGGCTGAGTCTGGGTTGGAACGACTCCACCAATGTGCAGAAAAGGAGTTGCAAGTTTACCTAAATGCTGATGGTTCTTCCAAAGATTTTAACGAGTTCCGTACCAAACTTGCTGGACTAACCAGTGTAACTCGAAATTACTTTGAGAATTTAGTACGTGCGCTTGAGAATGGTCTGTCGGACGTGGACTCCCATGGTACCTGCAGCAGAACAGCAAGCTCAAAGAGTACTGGTGGCTGTAGGAGTAAAGGTGGGAAGGGCAAGATGAGCGCATTCAGAGCTAGTGGTTCAAGTCGAACCATCGATGATACTGACCATTGGTCTTGTGAGCATTGCACCTTTGCAAATGTCAAGTCAGCTACCTTCTGCCAAATGTGCCAGCAACGGCGATAA | 942 | 46.71 | MQCANLLYLDSFTCVTCQGFIMLLPHPAGQAGVNKPVTAWVPKLSLDKSKLAQAETEKHNLGASYRLRRLTSPRNWLACPSHLSLASTSVTRQRDHLFQLSSYELLWDLRLQKALADLHQMQTVHLEKLSDIQCQPESQLKFISEAWLQIVECRRVLKWTYAYGYYLPEREHAKRQFFEYLQGEAESGLERLHQCAEKELQVYLNADGSSKDFNEFRTKLAGLTSVTRNYFENLVRALENGLSDVDSHGTCSRTASSKSTGGCRSKGGKGKMSAFRASGSSRTIDDTDHWSCEHCTFANVKSATFCQMCQQRR | 313 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 33207354 | 33211272 | + | Maker00003238 | Lcy4g1368 | 630894 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lcy4g1368 | 313 | MobiDBLite | consensus disorder prediction | 251 | 285 | - | - | |
| Lcy4g1368 | 313 | Gene3D | - | 75 | 245 | - | - | |
| Lcy4g1368 | 313 | ProSitePatterns | Zinc finger RanBP2-type signature. | 290 | 309 | IPR001876 | - | |
| Lcy4g1368 | 313 | Gene3D | - | 285 | 313 | - | - | |
| Lcy4g1368 | 313 | SMART | zf_4 | 288 | 312 | IPR001876 | - | |
| Lcy4g1368 | 313 | ProSiteProfiles | Zinc finger RanBP2 type profile. | 286 | 313 | IPR001876 | - | |
| Lcy4g1368 | 313 | SUPERFAMILY | Ran binding protein zinc finger-like | 286 | 313 | IPR036443 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lcy4g1368 | Lcy-Chr4:33207354 | Lcy13g1039 | Lcy-Chr13:22711472 | 8.67E-17 | dispersed | |
| Lcy3g1199 | Lcy-Chr3:37333970 | Lcy4g1368 | Lcy-Chr4:33207354 | 1.10E-97 | transposed | |
| Lcy1g2680 | Lcy-Chr1:51131475 | Lcy4g1368 | Lcy-Chr4:33207354 | 1.08E-13 | wgd | |
| Lcy4g1368 | Lcy-Chr4:33207354 | Lcy6g1975 | Lcy-Chr6:41963267 | 5.57E-06 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lcy4g1368 | K11968 | - | csv:101218052 | 397.512 |