Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy4g1368 ATGCAATGCGCTAACTTGCTCTACTTAGATAGTTTCACATGCGTTACCTGTCAGGGATTTATCATGCTGCTACCGCATCCAGCTGGCCAGGCGGGAGTTAATAAACCTGTCACCGCATGGGTGCCTAAGCTAAGCCTTGATAAAAGTAAATTAGCTCAGGCTGAGACAGAAAAACACAACTTGGGCGCTTCTTATAGGCTGAGGAGGCTAACTTCTCCAAGAAATTGGCTTGCGTGCCCCAGTCATCTTTCGCTAGCTAGCACATCAGTCACACGTCAGCGTGATCATCTCTTCCAGCTTTCATCGTACGAACTACTCTGGGATCTGCGCCTGCAAAAGGCACTTGCAGATCTTCATCAAATGCAAACCGTGCATCTGGAAAAATTAAGTGATATTCAGTGCCAACCTGAGTCGCAGCTAAAGTTCATAAGCGAAGCATGGCTACAGATTGTAGAGTGTAGGCGAGTTCTGAAATGGACTTATGCCTATGGATATTATCTACCTGAGCGTGAACATGCCAAGAGACAGTTCTTTGAGTACTTGCAAGGTGAGGCTGAGTCTGGGTTGGAACGACTCCACCAATGTGCAGAAAAGGAGTTGCAAGTTTACCTAAATGCTGATGGTTCTTCCAAAGATTTTAACGAGTTCCGTACCAAACTTGCTGGACTAACCAGTGTAACTCGAAATTACTTTGAGAATTTAGTACGTGCGCTTGAGAATGGTCTGTCGGACGTGGACTCCCATGGTACCTGCAGCAGAACAGCAAGCTCAAAGAGTACTGGTGGCTGTAGGAGTAAAGGTGGGAAGGGCAAGATGAGCGCATTCAGAGCTAGTGGTTCAAGTCGAACCATCGATGATACTGACCATTGGTCTTGTGAGCATTGCACCTTTGCAAATGTCAAGTCAGCTACCTTCTGCCAAATGTGCCAGCAACGGCGATAA 942 46.71 MQCANLLYLDSFTCVTCQGFIMLLPHPAGQAGVNKPVTAWVPKLSLDKSKLAQAETEKHNLGASYRLRRLTSPRNWLACPSHLSLASTSVTRQRDHLFQLSSYELLWDLRLQKALADLHQMQTVHLEKLSDIQCQPESQLKFISEAWLQIVECRRVLKWTYAYGYYLPEREHAKRQFFEYLQGEAESGLERLHQCAEKELQVYLNADGSSKDFNEFRTKLAGLTSVTRNYFENLVRALENGLSDVDSHGTCSRTASSKSTGGCRSKGGKGKMSAFRASGSSRTIDDTDHWSCEHCTFANVKSATFCQMCQQRR 313
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 33207354 33211272 + Maker00003238 Lcy4g1368 630894

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy4g1368 313 MobiDBLite consensus disorder prediction 251 285 - -
Lcy4g1368 313 Gene3D - 75 245 - -
Lcy4g1368 313 ProSitePatterns Zinc finger RanBP2-type signature. 290 309 IPR001876 -
Lcy4g1368 313 Gene3D - 285 313 - -
Lcy4g1368 313 SMART zf_4 288 312 IPR001876 -
Lcy4g1368 313 ProSiteProfiles Zinc finger RanBP2 type profile. 286 313 IPR001876 -
Lcy4g1368 313 SUPERFAMILY Ran binding protein zinc finger-like 286 313 IPR036443 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy4g1368 K11968 - - csv:101218052 397.512
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy4g1368 Lcy-Chr4:33207354 Lcy13g1039 Lcy-Chr13:22711472 8.67E-17 dispersed
Lcy3g1199 Lcy-Chr3:37333970 Lcy4g1368 Lcy-Chr4:33207354 1.10E-97 transposed
Lcy1g2680 Lcy-Chr1:51131475 Lcy4g1368 Lcy-Chr4:33207354 1.08E-13 wgd
Lcy4g1368 Lcy-Chr4:33207354 Lcy6g1975 Lcy-Chr6:41963267 5.57E-06 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy8g1087 . 164 590 ARIADNE family AT4G34370 72.0 1.9e-183 639.4
Lcy8g1087 . 58 542 ARIADNE family AT2G16090 77.4 1.0e-225 780.0
Lcy8g1087 . 38 543 ARIADNE family AT3G27710 61.6 4.0e-183 638.6
Lcy8g1087 . 44 522 ARIADNE family AT3G27720 54.7 5.7e-144 508.4
Lcy3g1199 . 61 560 ARIADNE family AT1G05890 70.2 5.7e-215 744.6
Lcy4g1368 . 112 258 ARIADNE family AT1G05890 70.1 2.3e-54 211.1
Lcy4g1367 . 704 806 ARIADNE family AT1G05890 79.8 2.6e-50 197.6
Lcy4g1363 . 774 866 ARIADNE family AT1G05890 73.1 5.4e-40 163.3
Lcy3g1199 . 16 613 ARIADNE family AT1G65430 66.9 2.6e-241 832.0
Lcy4g1368 . 112 314 ARIADNE family AT1G65430 70.4 6.4e-75 279.3
Lcy4g1367 . 701 807 ARIADNE family AT1G65430 80.5 4.1e-53 206.8
Lcy4g1363 . 773 866 ARIADNE family AT1G65430 85.1 1.7e-46 184.9
Lcy4g1363 . 18 133 ARIADNE family AT1G65430 62.9 2.6e-39 161.0
Lcy3g1199 . 58 479 ARIADNE family AT2G31780 54.7 1.3e-139 493.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001364 2 4 3 1 2 2 3 3 2 3 2 2 3 2 2 3 2 4 2 3 2 2 3 2 2 2 2 3 3 1 72