Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy4g1431 ATGGCCACTCTTTCTTGCCAACCTTCCGATTTGGCGTCACTCCTCGGCTCCACAGCCACCACCAATTCCACCGCCTTAGCCGAGTTCCTATGCTCAAGGTTCAACACCGTCGCCACCACTTTCAGCTCCACCACCTACGCCGTCGACAACACCTACCTCCTCTTCTCCGCCTACCTCGTCTTCGCCATGCAGCTGGGCTTCGCCATGCTTTGCGCTGGCTCTGTCCGCGCCAAAAACACCATGAACATCATGCTCACCAACGTCCTCGACGCCGCCGCCGGTGGCCTCTCCTACTACCTCTTCGGCTTTGCGTTCGCCTTCGGTGCCCCCTCCAACTCTTTCATTGGCCGCCACTTCTTCGGCCTCTCCAATTTTCCCAACCCCTCCACTGATTATAGCTTCTTCCTCTACCAATGGGCCTTTGCTATTGCTGCAGCTGGTATCACTAGTGGTTCCATAGCTGAACGAACCCAATTTGTAGCCTACCTCATCTACTCCACCGTTCTAACCGGGTTCGTCTACCCCATAGTCTCCCACTGGTTTTGGTCCGGAGATGGATGGGCCAGCCCAACCCGATCCAATAACCTCCTATTCAACTCGGGAGCAATTGACTTCGCCGGGTCAGGCGTGGTCCACATGGTCGGTGGCATAGCCGGCCTCTGGGGCGCCCTGATTGAAGGCCCTCGAATCGGCCGGTTCGACCGCTCCGGCCGATCCGTTGCCCTTCGCGGTCACAGCGCTTCCTTAGTAGTCCTTGGTTCATTTCTTCTCTGGTTCGGCTGGTACGGCTTCAACCCCGGCTCCTTCCTAACCATCTCCAAATCCTACAACGACGGCCGCCCTTACTACGGCCAATGGAGCGCCATAGGCCGAACCGGAGTCACCACAACACTAGCCGGATGCACAGCCGCCCTAACAACCCTCTTCACAAAACGCCTCTTAGTCGGCCACTGGAACGTAATCGACGTCTGCAACGGCCTATTAGGTGGGTTCGCCGCCATCACATCCGGCTGCTCGGTGGTCGAGCCATGGGCGGCGGTGATATGCGGGTTCGTAGCGTCGTGGGTGCTAATCGGGTTCAACAAGCTAGCGGAGAGGCTCAGCTACGACGACCCATTGGAGGCGGCGCAACTACACGGCGGGTGCGGAGCGTGGGGGCTGATATTCACAGGACTGTTCGCGAGAAAGGAGTACGTGGAGGAGGTGTATCAGGCAGGGCGGCCGTACGGGCTGTTCATGGGCGGCGGAGGGAGGCTGCTGGCGGCGCAGGTGGTGGAGATAGGGGCAATAGTGGGGTGGGTGTCGGTGACGATGGGGGGGCTGTTTTTTGCTCTGAAGAAGGGGGGATTGCTGAGGATATCTCGGGAGGATGAGATGGCGGGGATGGATTTGACGAGGCATGGGGGGTTTGCTTATGTATATAATGATGAAGATGATCCGTCGGGGAAGCCGGCTGGGTTTCTGATGAGGAGGATCGAGCCTGCAGATGGGAGTCCGGCTAGTCCTTCTGGGATGGCTGCTGTTTGA 1527 58.55 MATLSCQPSDLASLLGSTATTNSTALAEFLCSRFNTVATTFSSTTYAVDNTYLLFSAYLVFAMQLGFAMLCAGSVRAKNTMNIMLTNVLDAAAGGLSYYLFGFAFAFGAPSNSFIGRHFFGLSNFPNPSTDYSFFLYQWAFAIAAAGITSGSIAERTQFVAYLIYSTVLTGFVYPIVSHWFWSGDGWASPTRSNNLLFNSGAIDFAGSGVVHMVGGIAGLWGALIEGPRIGRFDRSGRSVALRGHSASLVVLGSFLLWFGWYGFNPGSFLTISKSYNDGRPYYGQWSAIGRTGVTTTLAGCTAALTTLFTKRLLVGHWNVIDVCNGLLGGFAAITSGCSVVEPWAAVICGFVASWVLIGFNKLAERLSYDDPLEAAQLHGGCGAWGLIFTGLFARKEYVEEVYQAGRPYGLFMGGGGRLLAAQVVEIGAIVGWVSVTMGGLFFALKKGGLLRISREDEMAGMDLTRHGGFAYVYNDEDDPSGKPAGFLMRRIEPADGSPASPSGMAAV 508
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 35520064 35521694 + Maker00017253 Lcy4g1431 630957
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy4g1431 508 SUPERFAMILY Ammonium transporter 46 453 - -
Lcy4g1431 508 PANTHER AMMONIUM TRANSPORTER 17 479 - GO:0005887(PANTHER)|GO:0008519(PANTHER)|GO:0072488(PANTHER)|GO:0097272(PANTHER)
Lcy4g1431 508 ProSitePatterns Ammonium transporters signature. 204 229 IPR018047 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
Lcy4g1431 508 Pfam Ammonium Transporter Family 52 472 IPR024041 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
Lcy4g1431 508 NCBIfam ammonium transporter 49 472 IPR001905 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
Lcy4g1431 508 Gene3D Ammonium transporter AmtB like domains 30 484 IPR029020 -
Lcy4g1431 508 FunFam Ammonium transporter 30 487 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g0436 Lcy-Chr13:5033901 Lcy4g1431 Lcy-Chr4:35520064 2.01E-258 dispersed
Lcy13g0979 Lcy-Chr13:19348623 Lcy4g1431 Lcy-Chr4:35520064 2.15E-64 dispersed
Lcy4g1431 Lcy-Chr4:35520064 Lcy12g2072 Lcy-Chr12:42103574 2.49E-260 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy4g1431 K03320 - csv:101222356 909.057