Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy4g1549 ATGGCGTCGAGCTCGTCGACTTCTCCGTGTGCAGCCTGCAAATTTCTCCGGCGAAAATGTCAACCGGAGTGCGTTTTCGCGCCGTATTTTCCGCCGGACCAGCCGCAGAAATTCGCCAATGTTCACAAGGTATTCGGCGCTAGCAATGTCACGAAACTCCTCAACGAATTGCATCCTCACCAGAGAGAAGACGCCGTCAATTCGCTCGCTTACGAAGCCGATATGCGCCTTCGCGACCCTGTCTATGGCTGCGTTGGCGTAATTTCTCTGCTCCAACACCAACTCTGTAAACTCCAAATGGATCTCACCTGCGCCAAATCCGAACTCTCCAAATACCAAAACCTAGGCATCGGGAACCACGCCGCCCTGATTTCACCGCCTTCCGCCGTTGCCGCCGTATCCGCCGCCGCTCATGGACAGCGGAACCACCAGCCGGCGTTCAATTTTGCTAGAGATCAACCGCATAGCCTCCTCTATCACGATCAGTTTTTCCCTCGAGATCAACAACAGCAACAGATGATGCTCCGACGGAGCTTCGACGGCGGTAGTAACTACGACGCCGGACTTTTGGCCGTCAACGTCACCGCCAGTATCGGCAACCTCAGCCACCAGTTCCAGCAACCTCGCGCCGCCGCCGGAGACGATCGTCGCGGTACTCTCGATCATTCTTAG 672 55.95 MASSSSTSPCAACKFLRRKCQPECVFAPYFPPDQPQKFANVHKVFGASNVTKLLNELHPHQREDAVNSLAYEADMRLRDPVYGCVGVISLLQHQLCKLQMDLTCAKSELSKYQNLGIGNHAALISPPSAVAAVSAAAHGQRNHQPAFNFARDQPHSLLYHDQFFPRDQQQQQMMLRRSFDGGSNYDAGLLAVNVTASIGNLSHQFQQPRAAAGDDRRGTLDHS 223
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 39163632 39164303 - Maker00017570 Lcy4g1549 631075
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy4g1549 223 Pfam Lateral organ boundaries (LOB) domain 9 106 IPR004883 -
Lcy4g1549 223 ProSiteProfiles LOB domain profile. 8 109 IPR004883 -
Lcy4g1549 223 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 7 153 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g0181 Lcy-Chr10:2497599 Lcy4g1549 Lcy-Chr4:39163632 3.26E-57 dispersed
Lcy10g2185 Lcy-Chr10:45770518 Lcy4g1549 Lcy-Chr4:39163632 8.29E-46 dispersed
Lcy2g0127 Lcy-Chr2:981291 Lcy4g1549 Lcy-Chr4:39163632 3.45E-57 dispersed
Lcy3g2218 Lcy-Chr3:49014358 Lcy4g1549 Lcy-Chr4:39163632 2.45E-28 dispersed
Lcy4g1549 Lcy-Chr4:39163632 Lcy8g0396 Lcy-Chr8:12210198 1.03E-56 dispersed
Lcy11g0522 Lcy-Chr11:12170869 Lcy4g1549 Lcy-Chr4:39163632 1.20E-29 wgd
Lcy4g1549 Lcy-Chr4:39163632 Lcy8g0393 Lcy-Chr8:12067168 2.23E-54 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19990 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy4g1549 - - - 0.0