Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy4g1553 ATGTTGGAGGGTGGTCAGAAATTCACTGGAATGATCGATTTAAACGAGCATGCATATGATCTATCACAAGGGTTTTACCATAAACTTGGCGAGGGAACCAACATGTCTATTGACAGCTTTGCAAGCTTGCAAACAAGCAATGATGGAGGGTCGGTAGCAATGTCTTTGGATAACAGCAGTGTAGGATCAAATGAATCTCATACTCGGATCTTAAATCACCAAGGCTTGCGACGGCGTGCAAATGACAACCATACTTTTCAACACAGTGTTAACCGTCGTGGAAGAGTTACACATCACCTGAGTGATGATGCACTAGCCCGAGCTTTGTTTGATAGTAATACACCCACCCAAGGTCTTGAAAATTTTGAGAAGTGGACTCTTGATTTAAGGAAACTTAATATGGGGGAGGCTTTTGCTCAAGGTGCCTTTGGAAAACTCTACAGAGGTACTTATGATGGCGAGGATGTTGCTATCAAGATCTTGGAGAGGCCAGAGAATGACCTGGAAAAGGCACAGTTAATGGAGCAGCAATATCAGCAGGAGGTGATGATGCTTGCTACTCTGAAGCACCCAAATATTGTCCGGTTTATTGGAGCATGTCATAAGCCAATGGTTTGGTGCATTGTTACTGAGTATGCGAAGGGTGGCTCAGTTAGACAGTTCTTGATGAGGCGACAAAGTCGCTCTGTCCCCCTGAAATTAGCTGTCAAACAAGCTTTGGATGTTGCTAGGGGAATGGAATATGTCCATGGCCTTGGGTTGATTCACAGGGACTTGAAATCAGACAACCTTTTGATTTTTGCGGATAAGTCAATCAAGGTTGCGGACTTTGGAGTGGCCCGGATAGAGGTGCAGACAGAGGGAATGACACCTGAGACTGGAACCTACCGCTGGATGGCTCCGTAA 906 45.25 MLEGGQKFTGMIDLNEHAYDLSQGFYHKLGEGTNMSIDSFASLQTSNDGGSVAMSLDNSSVGSNESHTRILNHQGLRRRANDNHTFQHSVNRRGRVTHHLSDDALARALFDSNTPTQGLENFEKWTLDLRKLNMGEAFAQGAFGKLYRGTYDGEDVAIKILERPENDLEKAQLMEQQYQQEVMMLATLKHPNIVRFIGACHKPMVWCIVTEYAKGGSVRQFLMRRQSRSVPLKLAVKQALDVARGMEYVHGLGLIHRDLKSDNLLIFADKSIKVADFGVARIEVQTEGMTPETGTYRWMAP 301
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 39289690 39290595 + Maker00017338 Lcy4g1553 631079
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy4g1553 301 SMART serkin_6 132 299 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy4g1553 301 PANTHER SERINE-THREONINE PROTEIN KINASE 75 301 IPR050167 GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
Lcy4g1553 301 Gene3D Phosphorylase Kinase; domain 1 123 207 - -
Lcy4g1553 301 Gene3D Transferase(Phosphotransferase) domain 1 208 301 - -
Lcy4g1553 301 SUPERFAMILY Protein kinase-like (PK-like) 120 301 IPR011009 -
Lcy4g1553 301 FunFam Serine/threonine-protein kinase isoform 1 122 214 - -
Lcy4g1553 301 ProSiteProfiles Protein kinase domain profile. 132 301 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy4g1553 301 ProSitePatterns Serine/Threonine protein kinases active-site signature. 254 266 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy4g1553 301 Pfam Protein kinase domain 140 301 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy4g1553 Lcy-Chr4:39289690 Lcy5g0042 Lcy-Chr5:567813 1.46E-45 dispersed
Lcy10g0222 Lcy-Chr10:3512089 Lcy4g1553 Lcy-Chr4:39289690 3.08E-39 wgd
Lcy4g1553 Lcy-Chr4:39289690 Lcy8g0872 Lcy-Chr8:31376785 1.10E-18 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65864 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy4g1553 - - - 0.0