Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy4g1554 ATGATCCAACACAGGCCTTACACCCAAAAGGTGGACTTGTACAGCTTTGGTATTGTTCTCTGGGAGCTCATCACTGGAATGCTCCCTTTCCAGAACATGACAGCCGTTCAAGCTGCTTTTGCAGTTGTTAACAAGGGTGTCCGTCCCATCATTCCAAATGATTGCTTACCTGTTTTAAGCGACATCATGACCCGGTGCTGGGATGCCAACCCCGATGTTAGGCCATCATTTACCGAGGTTGTCAGAATGCTTGAGAATGCACAGACGGAGATCATGACGACTGTGCGTAAGGCTCGTTTCAGGTGTTGCATTACGCAGCCGATGACAACAGACTGA 336 48.81 MIQHRPYTQKVDLYSFGIVLWELITGMLPFQNMTAVQAAFAVVNKGVRPIIPNDCLPVLSDIMTRCWDANPDVRPSFTEVVRMLENAQTEIMTTVRKARFRCCITQPMTTD 111
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 39297256 39300117 + Maker00017498 Lcy4g1554 631080
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy4g1554 111 ProSiteProfiles Protein kinase domain profile. 1 91 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy4g1554 111 Gene3D Transferase(Phosphotransferase) domain 1 1 107 - -
Lcy4g1554 111 SUPERFAMILY Protein kinase-like (PK-like) 2 98 IPR011009 -
Lcy4g1554 111 Pfam Protein tyrosine and serine/threonine kinase 2 84 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy4g1554 111 PANTHER SERINE-THREONINE PROTEIN KINASE 5 86 IPR050167 GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy4g1554 Lcy-Chr4:39297256 Lcy3g0858 Lcy-Chr3:30969604 6.47E-27 dispersed
Lcy4g1554 Lcy-Chr4:39297256 Lcy5g1875 Lcy-Chr5:41596723 7.72E-32 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65865 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy4g1554 - - - 0.0