Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy4g1566 ATGGCCAGAGGATCAGGAGCTCCGAAGAAAGACGAATCCGTGGCGGTGGCGGTCGACAAAGACAAATTCAGCCTGCAGGCTGTGAAATGGACAATCGAACGGCTTCTGAGCAAAGGCCAAGTTCTTACTCTGGTTCACGTCAAACAGAAATCGTCGAATTCTGCGATGAACCTCGGTGCTGATTCGGATGAGGCCGCTGTGTACAGACAGCAGCTTGAGAATCACGCCAGAGATCAGTTCTTCCTCCCCTTTCGTTGCATGTGCACAAGAACCAATGTAACATGCAATGAGGTGATATTGGAGGAGGCAGAGATTTCAAAAACATTAATCAATTATGTCAACAAAAATGTTATAGACAGTTTAGTACTTGGTGCCCCTTCAAGAACTGGCATTGTCAAGAGATTCAAGTCCACAGATATCCCAAGTAGTGTGTCAAAAGGAGCACCAGATTTCTGCACAGTTTACATTATTGGCAACAAAGGCAAGATTTCTTCAATGCGACAATCCACAGCTCCGGCGCCTGCAAAGCCCACTCCTCCTCCGCGCAGCCAGCTGCAGCCCGCCCCGCCGCGTCCTCAGCTGCTGCATCAGCTCACCAACGCCTCCGAGGTTGCAGCCGAGCAGTCGAACCATTCACGCTCCCAACCGTCTAGATATTTAGAGACTCAGGAAAGCACGTTATCAAATCCACCTCCTCGTGCCATTCACGAAGATTTTGAAATCAAGTCGCCATTTCTGAGGCCGGGTTCAAGGGCTTCAATGGGCAAAGGGGTGGAGCCATTCACGCCGGATTCCGACATATCGTTCGTGAGCAGCGGCAGGCGGAGCGTGGACCGAGGGTTCCCGTCGGCGTGGAACTCCGGCGGCGACTCGTATCGGCTTTCCAACGGCTCTGAGTTAGAAATTTTCAGCCCGGGTCCGGCTTCGCCTTCGCCTATCGTGGGAGTGGGAGGAGGAGGAGGAGGAGGAAGGAAGTCCGTTGATAATCATAATTACAACGCCTCTTCCAACACTTACCCTCAGGAAATGTCCTCTTGCTCCCTAGAAAGCGAGACCTTCTCTTGGGCTTCCTATTCAAATGCCCAGGATGATGTTGAAGCTGAGATGAGAAGGCTGAAATTGGAGCTCAAACAAACCATGGACATGTACAGTACTGCCTGCAAAGAAGCCCTAAACGCCAAGCAAAAGGCGAACGAGCTCCACCGCTGGAAACTGGAAGAAGAACAGAGATTAGAAGAGGCGAGACTGGCGGAGGAAGCAGCATTAGCGATGGCAGAGAAGGAGAAGGTGAAATGCAAAGCGGCGATGGAGGCAGCCGAAGCCGCACAAAAGATCGCAGCACTCGAGGCGAGGAAAAGAGCGACCGCTGAGAAAATGGCGGACATGGAAGCAGAGGAAACGAAAAAAGCACTTTCAGGATTCGGCCATGGAGATATCGGATACAGGAAGTACACAATCGAGGAAATCGAAGCCGCCACGAACGGCTTCTCCGCTACTCAGAAGATCGGCGAAGGCGGTTACGGTCCGGTCTTCCGTGGAGAACTCGACCACACGCCGGTCGCGATCAAGGTCCTCCGGCCGGACGCCGCTCAAGGCCGATCGCAATTTCAGCAAGAGGTTGAGGTTCTAAGCTGTATTCGACATCCAAATATGGTTCTCCTCCTCGGAGCCTGTCCTGAGAACGGCTGTTTAGTTTACGAATTCATGGCGAACGGAAGCTTAGAAGACTGTCTCTTCCGAAAACCCGAGGATCCAGTTCTTCCATGGCAGTTACGATTCCGTATCGCGGCGGAGATCGCGACCGGACTTCTCTTCCTGCACCAAACCAGACCAGAGCCGATTGTACATCGCGATCTGAAACCAGGGAACATTTTGCTCGATCGGAACTACGTGAGCAAAATCAGCGACGTCGGACTGGCAAGGCTGGTGCCTCCATCGGTGGCCAATTCGGTGACTCAGTATCGGATGACGGCGACGGCAGGGACGTTCTTCTACATCGATCCAGAGTATCAGCAAACAGGACTGCTAGGGATTAAATCGGACATTTACTCGCTCGGTGTGATGCTTCTGCAAATAATCACGGCCAGGCCGCCGATCGGACTGGCGCACGCCGTGGGCAGGGCGATTGAGAAGGGGAAATTTGAAGAGATGCTTGATCCGGATGTGAAGGATTGGCCGGTCGAAGAAGCGTTGAAGTTTGCGAAGCTTTCGATTCAGTGTGCGGAGATGAGGAAGAGAGATCGACCGGATCTTGGGAAGGTGGTGCTGCCGGAGCTCAATCGGTTGAGAGCGATCGCGGAAGAGAGTATGGGAATTCGGCCGTACAATAGCAGTTCGTCTTCATCGCCATGTGCAAGCCAAGCTTCTTCTTCTCAGGTAACTTCCCTTCCTTTCTTTCCCGCCATTGATGCTGTTTAG 2418 52.65 MARGSGAPKKDESVAVAVDKDKFSLQAVKWTIERLLSKGQVLTLVHVKQKSSNSAMNLGADSDEAAVYRQQLENHARDQFFLPFRCMCTRTNVTCNEVILEEAEISKTLINYVNKNVIDSLVLGAPSRTGIVKRFKSTDIPSSVSKGAPDFCTVYIIGNKGKISSMRQSTAPAPAKPTPPPRSQLQPAPPRPQLLHQLTNASEVAAEQSNHSRSQPSRYLETQESTLSNPPPRAIHEDFEIKSPFLRPGSRASMGKGVEPFTPDSDISFVSSGRRSVDRGFPSAWNSGGDSYRLSNGSELEIFSPGPASPSPIVGVGGGGGGGRKSVDNHNYNASSNTYPQEMSSCSLESETFSWASYSNAQDDVEAEMRRLKLELKQTMDMYSTACKEALNAKQKANELHRWKLEEEQRLEEARLAEEAALAMAEKEKVKCKAAMEAAEAAQKIAALEARKRATAEKMADMEAEETKKALSGFGHGDIGYRKYTIEEIEAATNGFSATQKIGEGGYGPVFRGELDHTPVAIKVLRPDAAQGRSQFQQEVEVLSCIRHPNMVLLLGACPENGCLVYEFMANGSLEDCLFRKPEDPVLPWQLRFRIAAEIATGLLFLHQTRPEPIVHRDLKPGNILLDRNYVSKISDVGLARLVPPSVANSVTQYRMTATAGTFFYIDPEYQQTGLLGIKSDIYSLGVMLLQIITARPPIGLAHAVGRAIEKGKFEEMLDPDVKDWPVEEALKFAKLSIQCAEMRKRDRPDLGKVVLPELNRLRAIAEESMGIRPYNSSSSSSPCASQASSSQVTSLPFFPAIDAV 805
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 39577499 39583974 + Maker00017194 Lcy4g1566 631092
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy4g1566 805 FunFam Os07g0541700 protein 569 659 - -
Lcy4g1566 805 Gene3D HUPs 12 156 IPR014729 -
Lcy4g1566 805 Pfam Universal stress protein family 14 133 IPR006016 -
Lcy4g1566 805 Gene3D Phosphorylase Kinase; domain 1 478 568 - -
Lcy4g1566 805 Pfam Protein tyrosine and serine/threonine kinase 498 754 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy4g1566 805 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 470 568 - -
Lcy4g1566 805 MobiDBLite consensus disorder prediction 193 230 - -
Lcy4g1566 805 MobiDBLite consensus disorder prediction 165 234 - -
Lcy4g1566 805 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 13 135 - -
Lcy4g1566 805 MobiDBLite consensus disorder prediction 173 188 - -
Lcy4g1566 805 ProSitePatterns Serine/Threonine protein kinases active-site signature. 614 626 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy4g1566 805 Coils Coil 408 465 - -
Lcy4g1566 805 Gene3D Transferase(Phosphotransferase) domain 1 569 774 - -
Lcy4g1566 805 SUPERFAMILY Protein kinase-like (PK-like) 479 755 IPR011009 -
Lcy4g1566 805 Coils Coil 362 382 - -
Lcy4g1566 805 CDD STK_N 13 161 - -
Lcy4g1566 805 PANTHER OS02G0152300 PROTEIN 14 782 IPR051348 -
Lcy4g1566 805 SMART serkin_6 496 759 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy4g1566 805 ProSiteProfiles Protein kinase domain profile. 496 759 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g1359 Lcy-Chr13:31660266 Lcy4g1566 Lcy-Chr4:39577499 3.57E-273 dispersed
Lcy13g2196 Lcy-Chr13:40882590 Lcy4g1566 Lcy-Chr4:39577499 5.50E-213 dispersed
Lcy3g0933 Lcy-Chr3:32749813 Lcy4g1566 Lcy-Chr4:39577499 5.43E-249 dispersed
Lcy4g1566 Lcy-Chr4:39577499 Lcy9g1759 Lcy-Chr9:42784375 1.13E-228 dispersed
Lcy2g1534 Lcy-Chr2:20265714 Lcy4g1566 Lcy-Chr4:39577499 9.51E-49 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65867 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy4g1566 - - - 0.0