Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy4g1566 | ATGGCCAGAGGATCAGGAGCTCCGAAGAAAGACGAATCCGTGGCGGTGGCGGTCGACAAAGACAAATTCAGCCTGCAGGCTGTGAAATGGACAATCGAACGGCTTCTGAGCAAAGGCCAAGTTCTTACTCTGGTTCACGTCAAACAGAAATCGTCGAATTCTGCGATGAACCTCGGTGCTGATTCGGATGAGGCCGCTGTGTACAGACAGCAGCTTGAGAATCACGCCAGAGATCAGTTCTTCCTCCCCTTTCGTTGCATGTGCACAAGAACCAATGTAACATGCAATGAGGTGATATTGGAGGAGGCAGAGATTTCAAAAACATTAATCAATTATGTCAACAAAAATGTTATAGACAGTTTAGTACTTGGTGCCCCTTCAAGAACTGGCATTGTCAAGAGATTCAAGTCCACAGATATCCCAAGTAGTGTGTCAAAAGGAGCACCAGATTTCTGCACAGTTTACATTATTGGCAACAAAGGCAAGATTTCTTCAATGCGACAATCCACAGCTCCGGCGCCTGCAAAGCCCACTCCTCCTCCGCGCAGCCAGCTGCAGCCCGCCCCGCCGCGTCCTCAGCTGCTGCATCAGCTCACCAACGCCTCCGAGGTTGCAGCCGAGCAGTCGAACCATTCACGCTCCCAACCGTCTAGATATTTAGAGACTCAGGAAAGCACGTTATCAAATCCACCTCCTCGTGCCATTCACGAAGATTTTGAAATCAAGTCGCCATTTCTGAGGCCGGGTTCAAGGGCTTCAATGGGCAAAGGGGTGGAGCCATTCACGCCGGATTCCGACATATCGTTCGTGAGCAGCGGCAGGCGGAGCGTGGACCGAGGGTTCCCGTCGGCGTGGAACTCCGGCGGCGACTCGTATCGGCTTTCCAACGGCTCTGAGTTAGAAATTTTCAGCCCGGGTCCGGCTTCGCCTTCGCCTATCGTGGGAGTGGGAGGAGGAGGAGGAGGAGGAAGGAAGTCCGTTGATAATCATAATTACAACGCCTCTTCCAACACTTACCCTCAGGAAATGTCCTCTTGCTCCCTAGAAAGCGAGACCTTCTCTTGGGCTTCCTATTCAAATGCCCAGGATGATGTTGAAGCTGAGATGAGAAGGCTGAAATTGGAGCTCAAACAAACCATGGACATGTACAGTACTGCCTGCAAAGAAGCCCTAAACGCCAAGCAAAAGGCGAACGAGCTCCACCGCTGGAAACTGGAAGAAGAACAGAGATTAGAAGAGGCGAGACTGGCGGAGGAAGCAGCATTAGCGATGGCAGAGAAGGAGAAGGTGAAATGCAAAGCGGCGATGGAGGCAGCCGAAGCCGCACAAAAGATCGCAGCACTCGAGGCGAGGAAAAGAGCGACCGCTGAGAAAATGGCGGACATGGAAGCAGAGGAAACGAAAAAAGCACTTTCAGGATTCGGCCATGGAGATATCGGATACAGGAAGTACACAATCGAGGAAATCGAAGCCGCCACGAACGGCTTCTCCGCTACTCAGAAGATCGGCGAAGGCGGTTACGGTCCGGTCTTCCGTGGAGAACTCGACCACACGCCGGTCGCGATCAAGGTCCTCCGGCCGGACGCCGCTCAAGGCCGATCGCAATTTCAGCAAGAGGTTGAGGTTCTAAGCTGTATTCGACATCCAAATATGGTTCTCCTCCTCGGAGCCTGTCCTGAGAACGGCTGTTTAGTTTACGAATTCATGGCGAACGGAAGCTTAGAAGACTGTCTCTTCCGAAAACCCGAGGATCCAGTTCTTCCATGGCAGTTACGATTCCGTATCGCGGCGGAGATCGCGACCGGACTTCTCTTCCTGCACCAAACCAGACCAGAGCCGATTGTACATCGCGATCTGAAACCAGGGAACATTTTGCTCGATCGGAACTACGTGAGCAAAATCAGCGACGTCGGACTGGCAAGGCTGGTGCCTCCATCGGTGGCCAATTCGGTGACTCAGTATCGGATGACGGCGACGGCAGGGACGTTCTTCTACATCGATCCAGAGTATCAGCAAACAGGACTGCTAGGGATTAAATCGGACATTTACTCGCTCGGTGTGATGCTTCTGCAAATAATCACGGCCAGGCCGCCGATCGGACTGGCGCACGCCGTGGGCAGGGCGATTGAGAAGGGGAAATTTGAAGAGATGCTTGATCCGGATGTGAAGGATTGGCCGGTCGAAGAAGCGTTGAAGTTTGCGAAGCTTTCGATTCAGTGTGCGGAGATGAGGAAGAGAGATCGACCGGATCTTGGGAAGGTGGTGCTGCCGGAGCTCAATCGGTTGAGAGCGATCGCGGAAGAGAGTATGGGAATTCGGCCGTACAATAGCAGTTCGTCTTCATCGCCATGTGCAAGCCAAGCTTCTTCTTCTCAGGTAACTTCCCTTCCTTTCTTTCCCGCCATTGATGCTGTTTAG | 2418 | 52.65 | MARGSGAPKKDESVAVAVDKDKFSLQAVKWTIERLLSKGQVLTLVHVKQKSSNSAMNLGADSDEAAVYRQQLENHARDQFFLPFRCMCTRTNVTCNEVILEEAEISKTLINYVNKNVIDSLVLGAPSRTGIVKRFKSTDIPSSVSKGAPDFCTVYIIGNKGKISSMRQSTAPAPAKPTPPPRSQLQPAPPRPQLLHQLTNASEVAAEQSNHSRSQPSRYLETQESTLSNPPPRAIHEDFEIKSPFLRPGSRASMGKGVEPFTPDSDISFVSSGRRSVDRGFPSAWNSGGDSYRLSNGSELEIFSPGPASPSPIVGVGGGGGGGRKSVDNHNYNASSNTYPQEMSSCSLESETFSWASYSNAQDDVEAEMRRLKLELKQTMDMYSTACKEALNAKQKANELHRWKLEEEQRLEEARLAEEAALAMAEKEKVKCKAAMEAAEAAQKIAALEARKRATAEKMADMEAEETKKALSGFGHGDIGYRKYTIEEIEAATNGFSATQKIGEGGYGPVFRGELDHTPVAIKVLRPDAAQGRSQFQQEVEVLSCIRHPNMVLLLGACPENGCLVYEFMANGSLEDCLFRKPEDPVLPWQLRFRIAAEIATGLLFLHQTRPEPIVHRDLKPGNILLDRNYVSKISDVGLARLVPPSVANSVTQYRMTATAGTFFYIDPEYQQTGLLGIKSDIYSLGVMLLQIITARPPIGLAHAVGRAIEKGKFEEMLDPDVKDWPVEEALKFAKLSIQCAEMRKRDRPDLGKVVLPELNRLRAIAEESMGIRPYNSSSSSSPCASQASSSQVTSLPFFPAIDAV | 805 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 39577499 | 39583974 | + | Maker00017194 | Lcy4g1566 | 631092 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy4g1566 | 805 | FunFam | Os07g0541700 protein | 569 | 659 | - | - | |
Lcy4g1566 | 805 | Gene3D | HUPs | 12 | 156 | IPR014729 | - | |
Lcy4g1566 | 805 | Pfam | Universal stress protein family | 14 | 133 | IPR006016 | - | |
Lcy4g1566 | 805 | Gene3D | Phosphorylase Kinase; domain 1 | 478 | 568 | - | - | |
Lcy4g1566 | 805 | Pfam | Protein tyrosine and serine/threonine kinase | 498 | 754 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Lcy4g1566 | 805 | FunFam | Adenine nucleotide alpha hydrolase-like domain kinase | 470 | 568 | - | - | |
Lcy4g1566 | 805 | MobiDBLite | consensus disorder prediction | 193 | 230 | - | - | |
Lcy4g1566 | 805 | MobiDBLite | consensus disorder prediction | 165 | 234 | - | - | |
Lcy4g1566 | 805 | SUPERFAMILY | Adenine nucleotide alpha hydrolases-like | 13 | 135 | - | - | |
Lcy4g1566 | 805 | MobiDBLite | consensus disorder prediction | 173 | 188 | - | - | |
Lcy4g1566 | 805 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 614 | 626 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Lcy4g1566 | 805 | Coils | Coil | 408 | 465 | - | - | |
Lcy4g1566 | 805 | Gene3D | Transferase(Phosphotransferase) domain 1 | 569 | 774 | - | - | |
Lcy4g1566 | 805 | SUPERFAMILY | Protein kinase-like (PK-like) | 479 | 755 | IPR011009 | - | |
Lcy4g1566 | 805 | Coils | Coil | 362 | 382 | - | - | |
Lcy4g1566 | 805 | CDD | STK_N | 13 | 161 | - | - | |
Lcy4g1566 | 805 | PANTHER | OS02G0152300 PROTEIN | 14 | 782 | IPR051348 | - | |
Lcy4g1566 | 805 | SMART | serkin_6 | 496 | 759 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lcy4g1566 | 805 | ProSiteProfiles | Protein kinase domain profile. | 496 | 759 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy13g1359 | Lcy-Chr13:31660266 | Lcy4g1566 | Lcy-Chr4:39577499 | 3.57E-273 | dispersed | |
Lcy13g2196 | Lcy-Chr13:40882590 | Lcy4g1566 | Lcy-Chr4:39577499 | 5.50E-213 | dispersed | |
Lcy3g0933 | Lcy-Chr3:32749813 | Lcy4g1566 | Lcy-Chr4:39577499 | 5.43E-249 | dispersed | |
Lcy4g1566 | Lcy-Chr4:39577499 | Lcy9g1759 | Lcy-Chr9:42784375 | 1.13E-228 | dispersed | |
Lcy2g1534 | Lcy-Chr2:20265714 | Lcy4g1566 | Lcy-Chr4:39577499 | 9.51E-49 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
65867 | None | None | None | None | Lcy | PK |
Pathway information
