Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy4g1576 ATGGCTTGCTCTTCAACAAAATCTAGTGCTTTTCTTTCTCTGTCTACAATGCTTCTTGTATCTCTTCTCACTAAGTTCATATTCCCAATGTCTCCAATTGCTTTTGGAGTCACCATCTTCCTTCTTCCTCTCCTTACTTACATCATCTCTTCCATGGCCTTCTCTTCCAAGCTTCCTCCTGGCCCTCTCTCCATCCCCATCTTTGGCAATTGGCTCCAAGTTGGCAATGACCTCAACCATCGCCTTCTTGCTTCCTTGTGCAAGAGATTCGGCTCGATCTTCCTCTTGAAGCTCGGCTCCAAGAATCTCGTTGTCGTGTCTGATGCTGAGCTTGCCAGTCAGGTTCTTCATGCGCAGGGCGTTGAGTTTGGCTCTCGCCCTCGTAATGTCGTGTTTGATATCTTCACTGGAAATGGTCAGGATATGGTGTTCACGGTTTATGGAGATCATTGGCGTAAGATGCGTAGAATCATGACGTTGCCGTTTTTCACAAATAAGGTGGTGCACAACTATAGTGACATGTGGGAGGACGAAATGGACTCTGTAGTTTGTGACCTCAAGAGTAACAAGAAGTTTCAATCGGAAGGGATAGTCATCAGGAAGCGTTTGCAACTGATGTTGTACAATATCATGTATAGAATGATGTTCGACGCAAAGTTTGAGTCCCAAGAGGATCCTTTGTTCATTGAAGCAACTCGATTCAACTCAGAAAGGAGTCGATTAGCACAAAGCTTTGAATACAACTACGGAGATTTCATTCCTTTGCTCAGGCCCTTCTTGAGAGGTTACTTGAATAAGTGTAGGGATTTGCAGAGTAGGAGGCTAGACTTTTTCAACAAAAACTACGTTGAGAAAAGAAGAAAGATAATGGCTGCCAATGGAGACAAGCACAAGATAAGTTGCGCCATGGATCATATCATAGACGCTCAAATAAAAGGTGAAATCAGTGAAGAGAATGTGATTTACATCGTAGAGAACATCAACGTGGCAGCGATAGAAACCACATTATGGTCGATGGAATGGGCAATAGCTGAGTTGGTGAATCATCCCGAAATTCAACGCAAGATTCGGGAGGAGCTAACCAATGTCCTAAAAGGAAAGGAGGTGACAGAATCTAACCTTCATGAACTGCCATACTTACAAGCAACAGTGAAAGAGACACTAAGATTGCACACTCCAATACCATTGTTGGTGCCACATATGAACTTGGAAGAAGCAAAGCTTGGAGGATACACCATTCCAAAGGAATCCAAGGTGGTGGTCAATGCATGGTGGCTGGCGAACAACCCTGAGTGGTGGAAGAATCCTGAGGAGTTTAGACCAGAGAGGTTCTTTGAAGAAGAAAGTGGCACAGAAGCTGTTGCAGCAGGGAAAGTGGATTACCGATTCTTACCATTTGGAGTTGGAAGGAGAAGTTGCCCTGGAATAGTTTTGGCAATGCCAATCTTAGGACTCATCGTTGCCAAATTGGTTTCAAAGTTTGAAATGAAGCCTCCTAGTGGAATGGAGAAGATCGATGTCACCGAGAAAGGAGGACAGTTTAGTCTGCATATCGCCAACCACTCCACAGTTGTTTTTGACCCCATAATTGCTTAA 1596 44.11 MACSSTKSSAFLSLSTMLLVSLLTKFIFPMSPIAFGVTIFLLPLLTYIISSMAFSSKLPPGPLSIPIFGNWLQVGNDLNHRLLASLCKRFGSIFLLKLGSKNLVVVSDAELASQVLHAQGVEFGSRPRNVVFDIFTGNGQDMVFTVYGDHWRKMRRIMTLPFFTNKVVHNYSDMWEDEMDSVVCDLKSNKKFQSEGIVIRKRLQLMLYNIMYRMMFDAKFESQEDPLFIEATRFNSERSRLAQSFEYNYGDFIPLLRPFLRGYLNKCRDLQSRRLDFFNKNYVEKRRKIMAANGDKHKISCAMDHIIDAQIKGEISEENVIYIVENINVAAIETTLWSMEWAIAELVNHPEIQRKIREELTNVLKGKEVTESNLHELPYLQATVKETLRLHTPIPLLVPHMNLEEAKLGGYTIPKESKVVVNAWWLANNPEWWKNPEEFRPERFFEEESGTEAVAAGKVDYRFLPFGVGRRSCPGIVLAMPILGLIVAKLVSKFEMKPPSGMEKIDVTEKGGQFSLHIANHSTVVFDPIIA 531
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 39793760 39795670 + Maker00017279 Lcy4g1576 631102
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy4g1576 531 PANTHER TRANS-CINNAMATE 4-MONOOXYGENASE 43 529 - GO:0004497(PANTHER)
Lcy4g1576 531 SUPERFAMILY Cytochrome P450 59 511 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy4g1576 531 PRINTS P450 superfamily signature 464 473 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy4g1576 531 PRINTS P450 superfamily signature 330 347 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy4g1576 531 PRINTS P450 superfamily signature 382 393 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy4g1576 531 Gene3D Cytochrome P450 53 525 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy4g1576 531 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 466 475 IPR017972 GO:0005506(InterPro)|GO:0016705(InterPro)
Lcy4g1576 531 PRINTS E-class P450 group I signature 381 399 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy4g1576 531 PRINTS E-class P450 group I signature 463 473 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy4g1576 531 PRINTS E-class P450 group I signature 206 224 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy4g1576 531 PRINTS E-class P450 group I signature 319 336 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy4g1576 531 PRINTS E-class P450 group I signature 87 106 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy4g1576 531 PRINTS E-class P450 group I signature 473 496 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy4g1576 531 PRINTS E-class P450 group I signature 422 446 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy4g1576 531 PRINTS E-class P450 group I signature 339 365 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy4g1576 531 PRINTS E-class P450 group I signature 111 132 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy4g1576 531 Pfam Cytochrome P450 59 520 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy4g1576 531 FunFam Trans-cinnamate 4-monooxygenase 49 523 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy4g1576 Lcy-Chr4:39793760 Lcy4g1581 Lcy-Chr4:39871351 0 dispersed
Lcy4g1576 Lcy-Chr4:39793760 Lcy4g1578 Lcy-Chr4:39810091 0 proximal
Lcy2g1252 Lcy-Chr2:13284109 Lcy4g1576 Lcy-Chr4:39793760 1.75E-39 wgd
Lcy4g1576 Lcy-Chr4:39793760 Lcy8g0971 Lcy-Chr8:34286358 6.91E-50 wgd
Lcy4g1576 Lcy-Chr4:39793760 Lcy8g0103 Lcy-Chr8:2370845 1.30E-70 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy4g1576 K00487 - csv:101204747 999.964