Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lcy4g1578 | ATGGCTTCCAGTGCTTTTCTTTCTCTGTCTACAATGGTTGTTGTTTCTCTTGTTACTAAGTTCATATTCCCAATGTCTCCAATTGCTTTTGGAGTCACCATCTTCCTTCTTCCTCTCCTTACTTACATCATCTCTTCCATGGCCTTCTCTTCCAAGCTTCCTCCTGGCCCTCTCTCCATCCCCATTTTTGGCAATTGGCTCCAAGTTGGCAATGACCTCAACCATCGCCTTCTTGCTTCCTTGTGCAAGAGATTCGGCTCTATCTTCCTCTTGAAGCTTGGCTCCAAGAATCTCGTTGTCGTGTCTGATGCCGAGCTTGCCAGTCAGGTTCTTCATGCGCAGGGCGTTGAGTTTGGCTCTCGCCCTCGTAATGTTGTGTTTGATATCTTTACTGGAAATGGTCAGGATATGGTGTTTACGGTTTATGGAGACCATTGGCGTAAGATGCGTAGAATCATGACGTTGCCGTTTTTCACGAATAAGGTGGTGAACAACTACAGTGGCATGTGGGAGGATGAGATGGACTCTGTGGTTCGTGATCTTAAGAGTAACAAGAAGTTCCAATTGGAAGGGATAGTTATTAGAAAACGTTTGCAATTGATGTTGTACAATATCATGTACAGAATGATGTTCGATGCAAAGTTTGAGTCCCAAGAGGATCCTTTGTTCATTGAAGCAACTCAATTCAACTCAAAAAGGAGTCAATTGGCACAAAGCTTCGAATACAACTATGGAGATTTTATTCCTTTGCTCAGACCCTTCTTGAGAGGGTACTTGAACAAGTGTAGGGATTTGCAGAGTAGGAGATTGGATTTTTTCAACAAAAACTACGTTGAGAAAAGAAGGAAGATAATGGCTGCCAATGGAGACAAGCACAAGATAAGTTGTGCCATGGATCATATCATAGACGCTCAATTGAAAGGTGAGATCAGTGAAGAGAATGTGATCTACATCGTAGAGAACATCAACGTGGCAGCGATAGAGACGACATTATGGTCGATGGAATGGGCAATAGCAGAGCTTGTGAATCATCCAAACATCCAACAAAAGATTCGGGAGGAGATTGGAAACATCCTAAAAGGAAAGGAAGTGACTGAATCCAACCTTCACGAATTGCCATACTTGCAAGCGACGGTGAAAGAGACACTAAGATTGCACACTCCAATACCATTGTTGGTGCCACATATGAACTTAGAGGAGGCAAAGTTGGGAGGGTACACCATTCCAAAGGAATCCAAGGTGGTGGTCAATGCATGGTGGCTAGCAAACAACCCTGCATGGTGGAAAAATCCAGAGGAATTTAGGCCCGAAAGGTTCTTCGAAGAAGAAAGTGGCACAGAAGCTGTTGCAGCAGGGAAAGTGGATTACCGATTCTTACCATTTGGAGTTGGAAGGAGAAGTTGCCCTGGAATTGTTTTGGCAATGCCAATCTTAGGACTCATCGTTGCCAAGTTAGTTTCAAAGTTTGAAATGAAGCCTCCTAGTGGGATGGAGAAGATTGATGTCACTGAGAAAGGAGGCCAATTCAGTTTGCATATCGCCAACCACTCCACAGTTGTTTTTGACCCCATAATGGCTTAA | 1581 | 43.77 | MASSAFLSLSTMVVVSLVTKFIFPMSPIAFGVTIFLLPLLTYIISSMAFSSKLPPGPLSIPIFGNWLQVGNDLNHRLLASLCKRFGSIFLLKLGSKNLVVVSDAELASQVLHAQGVEFGSRPRNVVFDIFTGNGQDMVFTVYGDHWRKMRRIMTLPFFTNKVVNNYSGMWEDEMDSVVRDLKSNKKFQLEGIVIRKRLQLMLYNIMYRMMFDAKFESQEDPLFIEATQFNSKRSQLAQSFEYNYGDFIPLLRPFLRGYLNKCRDLQSRRLDFFNKNYVEKRRKIMAANGDKHKISCAMDHIIDAQLKGEISEENVIYIVENINVAAIETTLWSMEWAIAELVNHPNIQQKIREEIGNILKGKEVTESNLHELPYLQATVKETLRLHTPIPLLVPHMNLEEAKLGGYTIPKESKVVVNAWWLANNPAWWKNPEEFRPERFFEEESGTEAVAAGKVDYRFLPFGVGRRSCPGIVLAMPILGLIVAKLVSKFEMKPPSGMEKIDVTEKGGQFSLHIANHSTVVFDPIMA | 526 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 39810091 | 39811957 | + | Maker00017416 | Lcy4g1578 | 631104 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lcy4g1578 | 526 | FunFam | Trans-cinnamate 4-monooxygenase | 44 | 518 | - | - | |
| Lcy4g1578 | 526 | PRINTS | E-class P450 group I signature | 376 | 394 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy4g1578 | 526 | PRINTS | E-class P450 group I signature | 458 | 468 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy4g1578 | 526 | PRINTS | E-class P450 group I signature | 334 | 360 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy4g1578 | 526 | PRINTS | E-class P450 group I signature | 417 | 441 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy4g1578 | 526 | PRINTS | E-class P450 group I signature | 106 | 127 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy4g1578 | 526 | PRINTS | E-class P450 group I signature | 314 | 331 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy4g1578 | 526 | PRINTS | E-class P450 group I signature | 468 | 491 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy4g1578 | 526 | PRINTS | E-class P450 group I signature | 201 | 219 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy4g1578 | 526 | PRINTS | E-class P450 group I signature | 82 | 101 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy4g1578 | 526 | Gene3D | Cytochrome P450 | 48 | 520 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy4g1578 | 526 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 461 | 470 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) | |
| Lcy4g1578 | 526 | Pfam | Cytochrome P450 | 54 | 515 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy4g1578 | 526 | PANTHER | TRANS-CINNAMATE 4-MONOOXYGENASE | 37 | 525 | - | GO:0004497(PANTHER) | |
| Lcy4g1578 | 526 | PRINTS | P450 superfamily signature | 377 | 388 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy4g1578 | 526 | PRINTS | P450 superfamily signature | 459 | 468 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy4g1578 | 526 | PRINTS | P450 superfamily signature | 325 | 342 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy4g1578 | 526 | SUPERFAMILY | Cytochrome P450 | 54 | 506 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lcy4g1578 | Lcy-Chr4:39810091 | Lcy4g1581 | Lcy-Chr4:39871351 | 0 | dispersed | |
| Lcy4g1576 | Lcy-Chr4:39793760 | Lcy4g1578 | Lcy-Chr4:39810091 | 0 | proximal | |
| Lcy4g1578 | Lcy-Chr4:39810091 | Lcy4g1580 | Lcy-Chr4:39861750 | 0 | proximal | |
| Lcy4g1578 | Lcy-Chr4:39810091 | Lcy8g0853 | Lcy-Chr8:30776440 | 8.10E-58 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lcy4g1578 | K00487 | - | csv:105434566 | 981.859 |