Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lcy4g1580 | ATGGCTTCCAGTGCTTTTCTTTCTCTGTCTACAATGGTTGTTGTTTCTCTTGTTACTAAGTTCATATTCCCAATGTCTCCAATTGCTTTTGGAGTCACCATCTTCCTTCTTCCTCTCCTTACTTACATCATCTCTTCCATGGCCTTCTCTTCCAAGCTTCCTCCTGGCCCTCTCTCCATCCCCATCTTTGGCAATTGGCTCCAAGTTGGCAATGACCTCAACCATCGCCTTCTTGCTTCCTTGTGCAAGAAATTCGGCTCGATCTTCCTCTTGAAGCTTGGCTCCAAGAATCTCGTTGTCGTGTCTGATGCTGAGCTTGCCAGTCAGGATATGGTGTTTACGGTTTATGGAGACCATTGGCGTAAGATGCGTAGAATCATGACATTGCCCTTCTTTACAAACAAAGTGGTGCACAACTACAGCAGCATGTGGGAGGACGAGATGGACTCTGTAGTTCGTGATCTTAGGAGTAACAAGAAATTCCAATCAAAAGGAATAGTCATTAGAAAGCGTTTGCAACTGATGTTGTACAATATCATGTACAGAATGATGTTTGATGCAAAGTTTGAGTCCCAAGAGGATCCTTTGTTCATTGAAGCAACTCGATTCAACTCGGAAAGGAGTCGATTGGCACAAAGCTTTGAATACAACTATGGAGATTTCATTCCTTTGCTGAGACCCTTCTTGAGAGGGTACTTGAACAAGTGTAGGGATTTACAAAGTAGGAGATTGGATTTTTTCAACAAAAACTATGTTGAGAAAAGAAGGAAGATAATGGCTGCCAATGGAGACAAGCACAAGATAAGTTGTGCCATGGATCATATCATAGACGCTCAATTGAAAGGTGAGATCAGTGAAGAGAATGTGATCTACATTGTAGAAAACATCAACGTGGCAGCGATAGAGACGACATTATGGTCGATGGAATGGGCAATAGCAGAGCTTGTGAATCATCCAAACATCCAACAAAAGATTCGGGAGGAGATTGGAAACATCCTAAAAGGAAAGGAAGTGACTGAATCCAACCTTCACGAATTGCCATACTTGCAAGCGACGGTGAAAGAGACACTAAGATTGCACACTCCAATACCATTGTTGGTGCCACATATGAACTTAGAGGAGGCAAAGTTGGGAGGGTACACCATTCCAAAGGAATCCAAGGTGGTGGTCAATGCATGGTGGCTAGCAAACAACCCTGCATGGTGGAAAAATCCAGAGGAATTTAGGCCCGAAAGGTTCTTCGAAGAAGAAAGTGGCACAGAAGCTGTTGCAGCAGGGAAAGTGGATTACCGATTCTTACCATTTGGAGTTGGAAGGAGAAGTTGCCCTGGAATTGTTTTGGCAATGCCAATCTTAGGACTCATCGTTGCCAAGTTAGTTTCAAAGTTTGAAATGAAGCCTCCTAGTGGGATGGAGAAGATTGATGTCACTGAGAAAGGAGGCCAATTCAGTTTGCATATCGCCAACCACTCCACAGTTGTTTTTGACCCCATAATGGCTTAA | 1503 | 43.45 | MASSAFLSLSTMVVVSLVTKFIFPMSPIAFGVTIFLLPLLTYIISSMAFSSKLPPGPLSIPIFGNWLQVGNDLNHRLLASLCKKFGSIFLLKLGSKNLVVVSDAELASQDMVFTVYGDHWRKMRRIMTLPFFTNKVVHNYSSMWEDEMDSVVRDLRSNKKFQSKGIVIRKRLQLMLYNIMYRMMFDAKFESQEDPLFIEATRFNSERSRLAQSFEYNYGDFIPLLRPFLRGYLNKCRDLQSRRLDFFNKNYVEKRRKIMAANGDKHKISCAMDHIIDAQLKGEISEENVIYIVENINVAAIETTLWSMEWAIAELVNHPNIQQKIREEIGNILKGKEVTESNLHELPYLQATVKETLRLHTPIPLLVPHMNLEEAKLGGYTIPKESKVVVNAWWLANNPAWWKNPEEFRPERFFEEESGTEAVAAGKVDYRFLPFGVGRRSCPGIVLAMPILGLIVAKLVSKFEMKPPSGMEKIDVTEKGGQFSLHIANHSTVVFDPIMA | 500 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 39861750 | 39863560 | + | Maker00017080 | Lcy4g1580 | 631106 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lcy4g1580 | 500 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 435 | 444 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) | |
| Lcy4g1580 | 500 | PRINTS | E-class P450 group I signature | 432 | 442 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy4g1580 | 500 | PRINTS | E-class P450 group I signature | 308 | 334 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy4g1580 | 500 | PRINTS | E-class P450 group I signature | 350 | 368 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy4g1580 | 500 | PRINTS | E-class P450 group I signature | 442 | 465 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy4g1580 | 500 | PRINTS | E-class P450 group I signature | 391 | 415 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy4g1580 | 500 | PRINTS | E-class P450 group I signature | 288 | 305 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy4g1580 | 500 | PRINTS | E-class P450 group I signature | 82 | 101 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy4g1580 | 500 | Pfam | Cytochrome P450 | 54 | 112 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy4g1580 | 500 | Pfam | Cytochrome P450 | 109 | 489 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy4g1580 | 500 | PRINTS | P450 superfamily signature | 351 | 362 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy4g1580 | 500 | PRINTS | P450 superfamily signature | 299 | 316 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy4g1580 | 500 | PRINTS | P450 superfamily signature | 433 | 442 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy4g1580 | 500 | Gene3D | Cytochrome P450 | 47 | 492 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy4g1580 | 500 | PANTHER | TRANS-CINNAMATE 4-MONOOXYGENASE | 109 | 499 | - | GO:0004497(PANTHER) | |
| Lcy4g1580 | 500 | SUPERFAMILY | Cytochrome P450 | 54 | 480 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lcy4g1580 | Lcy-Chr4:39861750 | Lcy4g1582 | Lcy-Chr4:39876299 | 8.56E-304 | dispersed | |
| Lcy4g1578 | Lcy-Chr4:39810091 | Lcy4g1580 | Lcy-Chr4:39861750 | 0 | proximal | |
| Lcy4g1580 | Lcy-Chr4:39861750 | Lcy4g1581 | Lcy-Chr4:39871351 | 0 | tandem | |
| Lcy12g1256 | Lcy-Chr12:26435509 | Lcy4g1580 | Lcy-Chr4:39861750 | 3.13E-53 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lcy4g1580 | K00487 | - | csv:105434566 | 917.146 |