Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy4g1581 ATGGCTTCCAGTGCTTTTCTTTCTCTGTCTACAATGGTTCTTGTTTCTCTTGTTACTAAGTTCATATTCCCAATGTCTCCAATTGCTTTTGGAGTCACCATCTTCCTTCTTCCTCTCCTTACTTACATCATCTCTTCCATGGCCTTCTCTTCCAAGCTTCCTCCTGGCCCTCTCTCCATCCCCATTTTTGGCAATTGGCTCCAAGTTGGCAATGACCTCAACCATCGCCTTCTTGCTTCCTTGTGCAAGAGATTCGGCTCTATCTTCCTCTTGAAGCTTGGCTCCAAGAATCTCGTTGTCGTGTCTGATGCTGAGCTTGCCAGTCAGGTTCTCCATGCCCAAGGCGTTGAGTTTGGCTCCCGCCCTCGTAATGTTGTGTTTGATATCTTTACTGGCAATGGTCAAGATATGGTGTTTACAGTTTATGGAGACCATTGGCGTAAGATGCGTAGAATCATGACATTGCCCTTCTTTACAAACAAAGTGGTGCACAACTACAGTGGCATGTGGGAGGACGAGATGGACTCTGTAGTTCGTGATCTTAGGAGTAACAAGAAATTCCAATCAGAAGGAATAGTCATTAGAAAGCGTTTACAACTGATGTTGTACAATATCATGTACAGAATGATGTTTGATGCAAAGTTTGAGTCCCAAGAGGACCCTTTGTTCATTGAAGCAACTCAATTCAACTCAAAAAGGAGTCAATTGGCACAAAGCTTCGAATACAACTATGGAGATTTCATTCCTTTGCTCAGACCCTTCTTGAGAGGTTACCTGAACAAGTGCAGGGATTTGCAGAGTAGAAGGCTGGACTTTTTCAACAAAAACTATGTGGAGAAAAGAAGGAAGATAATGGCTGCCAATGGAGATAAGCACAAGATAACTTGTGCCATGGATCATATCATAGACGCTCAATTGAAAGGTGAGATTAGTGAAGAGAATGTTATTTACATCGTGGAAAACATCAATGTGGCGGCTATAGAAACGACATTGTGGTCGATGGAATGGGCGATAGCTGAATTGGTGAACCATCCAGACATCCAACGCAAAATTCGAGACGAACTAACCAATGTCCTAAAAGGAAAGGAAGTGACAGAATCTAACCTTAATGAACTTCCATACTTACAAGCAACAGTGAAAGAGACACTAAGATTGCACACTCCAATACCATTGTTGGTGCCACATATGAACTTGGAAGAAGCAAAGCTTGGAGGATACACCATTCCAAAGGAATCCAAGGTGGTGGTGAATGCATGGTGGCTAGCAAACAACCCTGAGTGGTGGAAAAATCCAGAGGAGTTTAGACCAGAGAGGTTCTTTGAAGAAGAAAGTGGCATAGAAGCTGTTGCAGCAGGGAAAGTGGATTACCGATTCTTACCATTTGGAGTTGGAAGGAGGAGTTGTCCAGGTATTGTTCTGGCAATGCCAATCTTAGGACTCATCGTTGCCAAATTGGTTTCAAAGTTTGAAATGAAACCTCCAAAGGGGATAGAGAAGATCGATGTCAGTGAGAAAGGAGGCCAGTTTAGTCTGCACATTGCAAACCACTCGACTGTGGTATTTGAGCCAATAGTGGCTTAG 1581 43.26 MASSAFLSLSTMVLVSLVTKFIFPMSPIAFGVTIFLLPLLTYIISSMAFSSKLPPGPLSIPIFGNWLQVGNDLNHRLLASLCKRFGSIFLLKLGSKNLVVVSDAELASQVLHAQGVEFGSRPRNVVFDIFTGNGQDMVFTVYGDHWRKMRRIMTLPFFTNKVVHNYSGMWEDEMDSVVRDLRSNKKFQSEGIVIRKRLQLMLYNIMYRMMFDAKFESQEDPLFIEATQFNSKRSQLAQSFEYNYGDFIPLLRPFLRGYLNKCRDLQSRRLDFFNKNYVEKRRKIMAANGDKHKITCAMDHIIDAQLKGEISEENVIYIVENINVAAIETTLWSMEWAIAELVNHPDIQRKIRDELTNVLKGKEVTESNLNELPYLQATVKETLRLHTPIPLLVPHMNLEEAKLGGYTIPKESKVVVNAWWLANNPEWWKNPEEFRPERFFEEESGIEAVAAGKVDYRFLPFGVGRRSCPGIVLAMPILGLIVAKLVSKFEMKPPKGIEKIDVSEKGGQFSLHIANHSTVVFEPIVA 526
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 39871351 39873836 + Maker00017214 Lcy4g1581 631107
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy4g1581 526 PANTHER TRANS-CINNAMATE 4-MONOOXYGENASE 38 524 - GO:0004497(PANTHER)
Lcy4g1581 526 SUPERFAMILY Cytochrome P450 54 512 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy4g1581 526 PRINTS E-class P450 group I signature 376 394 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy4g1581 526 PRINTS E-class P450 group I signature 458 468 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy4g1581 526 PRINTS E-class P450 group I signature 106 127 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy4g1581 526 PRINTS E-class P450 group I signature 314 331 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy4g1581 526 PRINTS E-class P450 group I signature 468 491 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy4g1581 526 PRINTS E-class P450 group I signature 201 219 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy4g1581 526 PRINTS E-class P450 group I signature 334 360 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy4g1581 526 PRINTS E-class P450 group I signature 82 101 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy4g1581 526 PRINTS E-class P450 group I signature 417 441 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy4g1581 526 Pfam Cytochrome P450 54 515 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy4g1581 526 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 461 470 IPR017972 GO:0005506(InterPro)|GO:0016705(InterPro)
Lcy4g1581 526 FunFam Trans-cinnamate 4-monooxygenase 44 518 - -
Lcy4g1581 526 Gene3D Cytochrome P450 48 522 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy4g1581 526 PRINTS P450 superfamily signature 377 388 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy4g1581 526 PRINTS P450 superfamily signature 459 468 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy4g1581 526 PRINTS P450 superfamily signature 325 342 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy4g1576 Lcy-Chr4:39793760 Lcy4g1581 Lcy-Chr4:39871351 0 dispersed
Lcy4g1578 Lcy-Chr4:39810091 Lcy4g1581 Lcy-Chr4:39871351 0 dispersed
Lcy4g1581 Lcy-Chr4:39871351 Lcy8g1686 Lcy-Chr8:43438109 2.91E-233 dispersed
Lcy4g1580 Lcy-Chr4:39861750 Lcy4g1581 Lcy-Chr4:39871351 0 tandem
Lcy4g1581 Lcy-Chr4:39871351 Lcy4g1582 Lcy-Chr4:39876299 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy4g1581 K00487 - csv:105434566 994.186