Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy4g1582 ATGGGCCATTCTGCAGCAAAGTTTGGTTTCCTTTGCTCAGTCTCTGCAGTGGCTTTGGGGTTGCTCACCAAGTTCATTTTCCCCTCTTTGTTCTTCTCCATCTCCCCTAGCATCCTTCCAATCACTCTTTCCATTGCTCTTCTTTTTGCTTTCATCTTCTTTGCCTTGTCCAATTCCTCCAAACTTCCTCCGGGTCCTCTCCCTGTTCCCATCTTTGGGAATTGGCTCCAAGTTGGGAACGATCTAAACCATCGCCTCCTTGCTTCTTTGGCGCAAAAATACGGATCGGTCTTCCGACTCAAACTTGGCTACAAGAATCTAGTTGTGGTGTCAGATGCTGAGCTTGCCAACCAGGTCCTCCATGCTCAAGGTGTGGAGTTTGGCTCTCGCCCTCGAAATGTTGTGTTCGACATTTTCACTGGTAATGGACAAGATATGGTGTTCACCATTTATGGTGACCATTGGCGTAAAATGCGTAGAATTATGACACTGCCATTTTTTACGAACAAAGTTGTGCATAACTACAGTGGCATGTGGGAGGAAGAAATGGATTTGGTCGTTCGTGATCTTGTAAATAACCCAAAGGTGAAATCTGAAGGGTTAGTCATAAGAAAACGTTTGCAATTGATGTTGTACAACATCATGTACAGAATGATGTTTGATACCAAGTTCGAATCTCAAGAGGATCCTTTATTCATTGAAGCAACTCGATTCAACTCCGAAAGAAGCCGATTAGCACAAAGTTTCGAATACAATTATGGAGATTTCATTCCTTTGCTTAGACCCTTTTTGAGGGGTTATTTGAACAAGTGCAAGGATTTGCAAAGCAGGAGGTTGGCATTTTTCAACACTAACTACGTTGAGAAAAGAAGAAAAATAATGGCTGCCAATGGAGACAAGCACAAGATAAGTTGCGCCATGGATCATATTATAGATGCTCAGCTAAAAGGAGAAATTAGCGAAGAGAATGTGATATACATCGTGGAAAACATTAACGTTGCAGCAATAGAAACAACACTTTGGTCGATGGAGTGGGCAATAGCTGAGTTGGTAAACCATCCAACTGTCCAACAAAAAATCCGAGAGGAAATCTCAACCGTTCTAAAAGGAAAGGAAGTCACCGAATCTAACTTACATGAGTTGCCATATCTGCAAGCCACGGTAAAAGAGACATTGAGACTGCACACACCGATACCCCTATTAGTACCACATATGAACTTGGAAGAAGCCAAGCTTGGAGGCCACACAATTCCAAAGGAGTCTAAGGTGGTGGTGAATGCATGGTGGTTGGCCAACAACCCAGCATGGTGGAAAAATCCAGAGGAATTCAGGCCAGAGAGGTTCCTTCAAGAAGAGAGTGGCACAGAAGCTGTAGCAGGAGGCAAAGTCGACTTCCGGTTCTTACCATTTGGTGTTGGAAGGAGAAGTTGCCCAGGAATTGTCCTTGCACTGCCAATCTTGGGACTGATCATTTCTAAGTTGGTAACTAATTTTGAAATGAAGCCTCCAATTGGGATGGAGAAGATTGATGTGAGCGAAAAAGGAGGTCAATTCAGTTTGCACATTGCCAAACACTCAACCGTGGCATTCAAACCTATAACTGCTTAG 1608 43.47 MGHSAAKFGFLCSVSAVALGLLTKFIFPSLFFSISPSILPITLSIALLFAFIFFALSNSSKLPPGPLPVPIFGNWLQVGNDLNHRLLASLAQKYGSVFRLKLGYKNLVVVSDAELANQVLHAQGVEFGSRPRNVVFDIFTGNGQDMVFTIYGDHWRKMRRIMTLPFFTNKVVHNYSGMWEEEMDLVVRDLVNNPKVKSEGLVIRKRLQLMLYNIMYRMMFDTKFESQEDPLFIEATRFNSERSRLAQSFEYNYGDFIPLLRPFLRGYLNKCKDLQSRRLAFFNTNYVEKRRKIMAANGDKHKISCAMDHIIDAQLKGEISEENVIYIVENINVAAIETTLWSMEWAIAELVNHPTVQQKIREEISTVLKGKEVTESNLHELPYLQATVKETLRLHTPIPLLVPHMNLEEAKLGGHTIPKESKVVVNAWWLANNPAWWKNPEEFRPERFLQEESGTEAVAGGKVDFRFLPFGVGRRSCPGIVLALPILGLIISKLVTNFEMKPPIGMEKIDVSEKGGQFSLHIAKHSTVAFKPITA 535
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 39876299 39878130 + Maker00017108 Lcy4g1582 631108
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy4g1582 535 FunFam Trans-cinnamate 4-monooxygenase 55 527 - -
Lcy4g1582 535 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 470 479 IPR017972 GO:0005506(InterPro)|GO:0016705(InterPro)
Lcy4g1582 535 SUPERFAMILY Cytochrome P450 63 515 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy4g1582 535 Gene3D Cytochrome P450 56 529 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy4g1582 535 PANTHER TRANS-CINNAMATE 4-MONOOXYGENASE 42 534 - GO:0004497(PANTHER)
Lcy4g1582 535 PRINTS E-class P450 group I signature 385 403 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy4g1582 535 PRINTS E-class P450 group I signature 323 340 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy4g1582 535 PRINTS E-class P450 group I signature 426 450 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy4g1582 535 PRINTS E-class P450 group I signature 477 500 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy4g1582 535 PRINTS E-class P450 group I signature 91 110 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy4g1582 535 PRINTS E-class P450 group I signature 343 369 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy4g1582 535 PRINTS E-class P450 group I signature 115 136 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy4g1582 535 PRINTS E-class P450 group I signature 210 228 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy4g1582 535 PRINTS E-class P450 group I signature 467 477 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy4g1582 535 PRINTS P450 superfamily signature 386 397 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy4g1582 535 PRINTS P450 superfamily signature 468 477 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy4g1582 535 PRINTS P450 superfamily signature 334 351 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy4g1582 535 Pfam Cytochrome P450 63 524 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy4g1580 Lcy-Chr4:39861750 Lcy4g1582 Lcy-Chr4:39876299 8.56E-304 dispersed
Lcy4g1582 Lcy-Chr4:39876299 Lcy5g0828 Lcy-Chr5:13116027 5.21E-77 dispersed
Lcy4g1581 Lcy-Chr4:39871351 Lcy4g1582 Lcy-Chr4:39876299 0 tandem
Lcy8g1686 Lcy-Chr8:43438109 Lcy4g1582 Lcy-Chr4:39876299 1.31E-238 transposed
Lcy4g1582 Lcy-Chr4:39876299 Lcy8g0846 Lcy-Chr8:30508446 9.55E-60 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy4g1582 K00487 - csv:101205775 985.326