Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy4g1586 ATGAAGACGCCGGCGAACGGTGCCGCCGGTGCCGCCTCCTCCGCCGCCGCGCCTAATTCCTGCGAAGGTGGATTGGAGAAGAAGGTCATAAATCCGGAGTTATGGCAAGCGTGCGCCGGTCCACTGGTGAACCTGCCGCCGGCCGGTTACCACGTGGTGTATTTTCCTCAGGGCCACAGCGAACAGGTGGCAGCATCTTTGAAGAAAGATGTGGATGCCCAAATCCCAAACTACCCAAATCTTCCTTCCAAGTTATTATGTTTGCTTCATAATGTAACATTACATGCTGACCCAGAAACAGATGAAGTATATGCTCAAATGACACTACAACCAGTTCCCTCTTTTGACAAGGAGGCATTGTTGAGATCAGATCTAGCTCTCAAGTCTAATAAGCCTCAACCAGAGTTCTTCTGTAAAACATTGACTGCAAGTGACACGAGCACTCATGGCGGTTTCTCCGTACCACGCCGTGCTGCAGAGAAGATCTTCCCCACTCTTGATTTCTCAATGCAACCACCTGCACAAGAGCTTGTTGCTAAGGATTTACATGATACTGTATGGACTTTCCGTCACATATATCGAGGACAACCGAAACGTCATTTGCTGACAACCGGTTGGAGCTTATTTGTTAGTGGAAAGAGGCTTCTTGCTGGTGATTCAGTTTTGTTCATAAGAGATGAAAAACAACAGCTTCTATTGGGCATTAGGAGAGCGAACAGGCAACCGACAAACCTATCATCATCAGTGTTGTCAAGTGATAGTATGCACATTGGTATTCTTGCTGCTGCTGCCCATGCTGCTGCAAACAACAGCCCTTTCACTGTCTTCTACAACCCGAGAGCAAGTCCTTCAGAATTTGTCATTCCTCTTGCCAAATACTATAAGGCAGTGTCTGCAAACCAAATATCACTCGGCATGCGCTTTAGGATGATGTTCGAGACGGAAGAGTCTGGAACAAGAAGGTACATGGGCACTATCACAGGCATAAGTGATCTTGATCCTGTCAGATGGAAGGGCTCACAATGGCGTAATCTACAGGTTGGTTGGGATGAGTCGACTGGAGGAGAAAGGCGAAACCGAGTCTCAATATGGGAGATTGAACCTGTAATTGCTCCATTTTTCATTTGCCCCCCTCCTTTTTTGAGATCTAAACGTCCAAGGCAACCGGGAATGCCAGATGATGACTCCTCGGATTTGGACGGTATATTTAAAAGAACAATGTTTGGTGATGATTTCTGCATGAAAGATCCCCAAGGATATCCCGGCCTAAACTTAGTTCAATGGATGAATATGCAAAACCCCTCGCTCTCGAATTCAATGCAGCCAAATTACATGCATTCGTTTTCCGGGTCTATGCTTCCCAACCTTGGTGGAGTCGATATTTCTCGGCAACTTGGCTTGCCAAATACACAAATTCCTCAATCAAACAACATACAGTTCAATGCACAAAGGCTACTTTCTCAAGCTCAACAGTTAGATCAGATGCCTAAGATACCATCGAGTATGAACGCGTTGGGGTCTGTTGTGCAACCACCACAACAGTTGGATGATATGTCTCAGCAGACACGGCAGAATTTGATAAACCAAAACGCAGTCTCGAGTCAGATTCAGGCTCAAATAATGCAGCAGCCTCATGCTAATGGGATCCTACAGCAGCAAACCTCTTTGCAAAACCAGCAGCTTCAGAGAAGCCTCCCTCAGAACCTGCAAATGCAGCAGCATCAGCAAATTTTGGGTCAGAATCAACAGCAAAATATGAATCCATCCCCGCTCCCGGATCAGTTAAATCATCAGTTGCAAATGTCGGATAATCAAGTTCAAATGCAGATGTTGCAGAAGCTTCAGCAGCAGCAGCAAACACTTTTGGCTCAGCAGTCTGCCCTTCAGCCTGCTCAACTCACCCAACTCCCGGAACAGCAGAGACAGATGGTAGATGTGTCCCAAAGCTTTTCCAGGTCCATGTTGTCGAACCAAATGCTCGACATGCCTCAATCTACCCCAGCTCCAGTTCCTCCATCAAATGCTTTACCACAGCAGGCAGCGAAAAGCAATGGCCAGACAAATAACCGATTCTCGAATCAGCATTTGCAGCCGAAACTTCCACAACTGCAGCAACCAACTACATCTGCTGTACTTTCTGACATGTCTAGGCCAATGGGAATTCCTCCTACCCAAACAAACAATCAGCTCTCTGCAGCTACTAGTAGTGTAATAACAGGAGCAGCAGGGGCTGGCCAATCTGGAATCACTGACGACATACCATCTTGCTCCACATCACCTTCCACGAACAACTGTCCAAGTTTGGTTCAACCGGTAACTAATGGAAGGGTTCATCGAAGCACGGGGTTGGTTGAGGATGTTGCTCAATCTACTGCAACAATCTTCAGTGCAAATACCTTGGATACCATGTCACCAAATGCCAACCTAGTTAAAGATTTGCCACAGAAGACTGCTGTCAAACCTTCACTGAATATTTCCAAGAATCAAAATCATGGAATTTTTGCACAACAAACTTTCTTGAACAATGCTGTTGCACAGACGGATTTCTTGGACACGTCATCCTCCACAACCTCGGCTTGCCTTTCTCAGAACGATGCTCAGTTGCAGCAGAATAACATGATGTCTTTCAACTCACAGCCAATGTTGTTTAGAGATGGTGCTCAGGATTTGGAAGTACCAACAGATCTCCATAACATTCCGTACGGGACTAATGTCGACGGACAATTGGTAGCACAGTTAAACTCCGATCCTTTGTTAAACAAGGGCATTGGAGGGTTGGGGAAGGATTTCTCCAATAACTTCTCTTCCGGGGGCATGCTTGCCACTTACGATGCACAGAAAGATCCTCAACAGGAAATTTCTTCCTCTATAGTTTCACAATCATTTGGTATTCCAGACATGACATTTAATTCTATGGATTCAACGATAAACGATAGCGCCTTCTTGAATAGAAACCAATGGGCTCCTCCGCCTCCGTTCCCGCGTATGCGAACCTACACCAAGGTTTACAAACGTGGAGCTGTTGGGAGATCTATTGATATCACTCGTTACTCGGGTTATGATGAGCTAAAACAAGACCTGGCCCGTAGGTTCGGTATCGAGGGACAGTTGGAGGACAGGCAAAAAATTGGCTGGAAACTTGTTTATGTGGATCATGAGAATGATGTTTTACTCGTAGGCGATGACCCTTGGGAGGACTTTGTGAACTGCGTACGGAGCATCAAGATCCTCTCCCCACAGGAAGTCCAACAAATGAGCTTGGATGGAGATTTTGGGAACGGGGTCCTACCGAACCAAGCATGCAGTAGCTCAGATGGTGGAAATGCTTAA 3330 46.31 MKTPANGAAGAASSAAAPNSCEGGLEKKVINPELWQACAGPLVNLPPAGYHVVYFPQGHSEQVAASLKKDVDAQIPNYPNLPSKLLCLLHNVTLHADPETDEVYAQMTLQPVPSFDKEALLRSDLALKSNKPQPEFFCKTLTASDTSTHGGFSVPRRAAEKIFPTLDFSMQPPAQELVAKDLHDTVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLLAGDSVLFIRDEKQQLLLGIRRANRQPTNLSSSVLSSDSMHIGILAAAAHAAANNSPFTVFYNPRASPSEFVIPLAKYYKAVSANQISLGMRFRMMFETEESGTRRYMGTITGISDLDPVRWKGSQWRNLQVGWDESTGGERRNRVSIWEIEPVIAPFFICPPPFLRSKRPRQPGMPDDDSSDLDGIFKRTMFGDDFCMKDPQGYPGLNLVQWMNMQNPSLSNSMQPNYMHSFSGSMLPNLGGVDISRQLGLPNTQIPQSNNIQFNAQRLLSQAQQLDQMPKIPSSMNALGSVVQPPQQLDDMSQQTRQNLINQNAVSSQIQAQIMQQPHANGILQQQTSLQNQQLQRSLPQNLQMQQHQQILGQNQQQNMNPSPLPDQLNHQLQMSDNQVQMQMLQKLQQQQQTLLAQQSALQPAQLTQLPEQQRQMVDVSQSFSRSMLSNQMLDMPQSTPAPVPPSNALPQQAAKSNGQTNNRFSNQHLQPKLPQLQQPTTSAVLSDMSRPMGIPPTQTNNQLSAATSSVITGAAGAGQSGITDDIPSCSTSPSTNNCPSLVQPVTNGRVHRSTGLVEDVAQSTATIFSANTLDTMSPNANLVKDLPQKTAVKPSLNISKNQNHGIFAQQTFLNNAVAQTDFLDTSSSTTSACLSQNDAQLQQNNMMSFNSQPMLFRDGAQDLEVPTDLHNIPYGTNVDGQLVAQLNSDPLLNKGIGGLGKDFSNNFSSGGMLATYDAQKDPQQEISSSIVSQSFGIPDMTFNSMDSTINDSAFLNRNQWAPPPPFPRMRTYTKVYKRGAVGRSIDITRYSGYDELKQDLARRFGIEGQLEDRQKIGWKLVYVDHENDVLLVGDDPWEDFVNCVRSIKILSPQEVQQMSLDGDFGNGVLPNQACSSSDGGNA 1109
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 39949846 39958093 - Maker00017452 Lcy4g1586 631112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy4g1586 1109 MobiDBLite consensus disorder prediction 1 21 - -
Lcy4g1586 1109 Pfam Auxin response factor 263 346 IPR010525 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Lcy4g1586 1109 SUPERFAMILY CAD & PB1 domains 1010 1076 - -
Lcy4g1586 1109 MobiDBLite consensus disorder prediction 676 705 - -
Lcy4g1586 1109 Pfam AUX/IAA family 997 1082 IPR033389 -
Lcy4g1586 1109 SUPERFAMILY DNA-binding pseudobarrel domain 126 266 IPR015300 -
Lcy4g1586 1109 Gene3D - 993 1086 - -
Lcy4g1586 1109 FunFam Auxin response factor 301 372 - -
Lcy4g1586 1109 ProSiteProfiles B3 DNA-binding domain profile. 137 239 IPR003340 GO:0003677(InterPro)
Lcy4g1586 1109 ProSiteProfiles PB1 domain profile. 997 1082 IPR053793 -
Lcy4g1586 1109 FunFam Auxin response factor 993 1086 - -
Lcy4g1586 1109 SMART B3_2 137 239 IPR003340 GO:0003677(InterPro)
Lcy4g1586 1109 Pfam B3 DNA binding domain 137 239 IPR003340 GO:0003677(InterPro)
Lcy4g1586 1109 MobiDBLite consensus disorder prediction 660 705 - -
Lcy4g1586 1109 CDD B3_DNA 136 228 IPR003340 GO:0003677(InterPro)
Lcy4g1586 1109 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 30 1088 IPR044835 GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Lcy4g1586 1109 MobiDBLite consensus disorder prediction 498 520 - -
Lcy4g1586 1109 Gene3D - 135 238 IPR015300 -
Lcy4g1586 1109 Gene3D - 301 371 - -
Lcy4g1586 1109 FunFam Auxin response factor 135 239 - -
Lcy4g1586 1109 MobiDBLite consensus disorder prediction 568 596 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g1368 Lcy-Chr1:13243000 Lcy4g1586 Lcy-Chr4:39949846 4.51E-78 dispersed
Lcy4g1586 Lcy-Chr4:39949846 Lcy5g1695 Lcy-Chr5:39392044 4.60E-188 dispersed
Lcy4g2273 Lcy-Chr4:49213188 Lcy4g1586 Lcy-Chr4:39949846 8.52E-267 transposed
Lcy4g0845 Lcy-Chr4:11328680 Lcy4g1586 Lcy-Chr4:39949846 6.27E-105 wgd
Lcy4g1586 Lcy-Chr4:39949846 Lcy7g1941 Lcy-Chr7:45650767 4.12E-67 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19992 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy4g1586 - - - 0.0