Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lcy4g1594 | ATGGTGGAAGAGGGTGTTTGGTTTAGGTGGGGGCATTGTAGCTCTATGGTGGAGGAAATGCTTTGGAGTTCTCCTTTATGGCAAGCTGCACTAGTGTTAAATGCTTCTCGTCGATTTCGGTATACTTTAGACTTGAAAAAGGAAGAAGAGAAGAAAGAAGCTTTGAGGAAGATTAGAGCACATGCACAAGCCATACGAGCTGCATATCTCTTCAAAGCGGCTGGGGATCGTCTAACAGGACCTACAACAACAGAGACTTCAAATGGTGGTTTTTCTGTTGGGCAAGATCAACTGGCTGTATTGGTAAAGGATCGTAATGTTGAAGTTCTGGAGCAGTATGGAGGGGTTCAAGGGGTAGCAGATATGTTACAATCAAATTTAGAGAAGGGGATAGTTGGTGATGAATCTGATTTACTGAAACGAAGAAACACATATGGTTCAAACACATATCCTCAGAAACCAGGAAGGAGTTTTTGGAGGTTTCTCTGGGAAGCCTGGCAAGATCTTACATTGATCATATTGATGATAGCTGCAGTTGCTTCGTTGGTGCTAGGCATAAAGACTGAGGGTATCAAGGAAGGCTGGTATGATGGTGGAAGCATTGCTTTTGCAGTTATTCTTGTCATTGTTGTAACAGCTATAAGTGACTACCGACAATCTCTTCAATTTCAGAACTTGAATAAGGAAAAGAGGAACATACAAGTGGAGGTTGTTAGAGGTGGTCGTCGAATTGAGGTCTCAATTTATGAGATTGTTGTTGGTGATGTCATACCACTCAATATTGGTGATCAGGTCCCTGCTGATGGCATCTTAATTTCTGGACACTCACTTGCCATTGATGAATCAAGCATGACTGGAGAGAGCAAGATTGTCCAAAAGCATGCCAAAGAACCTTTCCTGATGTCTGGATGCAAAGTAGCTGATGGTAGTGGCACCATGCTGGTTACAAGTGTTGGAGTTAATACTGAATGGGGTTTGCTTATGGCAAGTATTTCTGAAGACAATGGCGAGGAAACTCCTTTGCAGGTGCGTTTAAATGGTGTGGCAACTTTAATTGGTATTGTTGGACTCACAGTAGCTTTTGCTGTATTGGTAGTGCTCCTGGCAAGGTATTTCACTGGACACACCAAAAATCCAGATGGAAGTCGTCAGTTTATTGCAGGCCAGACAAAAGTTGGTCGTGCCGTTGATGGGGCCATCAAAATTGTCACTATTGCGGTGACCATTGTTGTGGTTGCTGTGCCTGAAGGGCTTCCACTAGCTGTAACATTAACTCTTGCTTACTCGATGAGAAAGATGATGGCAGACAAGGCACTGGTGCGGAGGCTATCAGCATGTGAGACGATGGGGTCTGCTACAACTATTTGTAGTGATAAGACTGGAACCTTAACTATAAATCAGATGACCATTGTTGAGGCTTATGTTGGTGGGAAGAAGATTGATCCTCCAGAGAAGTCAGAGTTGTCTCCCATGTTACACTCCATACTTGTTGAAGGAATTGCTCTGAACTCAAATGGCAGTGTATATGTGCCTGAGAGTGGTGGAGAGGTAGAGGTTACGGGATCACCTACAGAAAAGGCTATTCTTAATTGGGGTATCAAGATGGGAATGAATTTTGACGCACTTAGATCAGAATCTGCAATTCTTCATGTTTTCCCCTTCAGCTCCGATAAAAAACGTGGTGGTGTTGCAGGGCAACGGGATAATGAAGTTCATATACATTGGAAAGGTGCTGCTGAGATAGTCTTAGCATCATGCACAAAGTACATGGATGAACATGATCTTTCTGTCGAATTAGATGAAGATAAGATGAAGTATTTCAAGAGAGCTATTGAGGATATGGCTTCACGTAGTTTACGTTGTGTTGCTATAGCATATAGATCTTTTGAACCTGAGAATGTTCCTGATGGTGAAGAACAATTGAGTAAGTGGGCTCTACCAGAAGATGACCTTGTTTTGTTGGCCATAGTTGGTTTAAAGGACCCCTGTCGACCGGGAGTAAAAGATGCAGTACGACTTTGTCAAAAGGCTGGTGTTAAGTCAGCATATTCGTTAGTGCTATTTTCATATATGCGCATACATGCTTTTGTAAGATGTAAGTTTTACTATGCTGTCGTTCCTTATTGGTATTGGGTGGTTTTGCTTATTGCTAGCAACTTTTGTGGGTTAAGTAAAAATCTGATGCAGGAAGTCTTCCTCCCAGAGAAGACGTTGCATTTGGTGGCCTCTGTGTTGCCTTCTTCTGACCTTGTTTCCTCGATTTCTCTTGGTTTTCATCGCCTTATTAACACCTTGGATCATGTTGAAAGGCATTCTTCTTTAGTTTTGCTCCTGCAATGGTGCATTCTTTGCAAAAGGTATGAGGAGGATTCGTATCATTTGCTGTGGGAGTGTCGGTTTGCTAACTACCTTTGGGATTGTTCGGTGTTAGTACGCATGGTCACTGGTGATAATGTCCAGACTGCTAGAGCTATTGCATTGGAATGTGGAATACTTGGTTCAGATTCAGATGCTACTGAACCAAACCTTATTGAAGGAAAAGCATTCCGTGCCCTCTCTGATGCCCAAAGAGAAGAAGTTGCTGAAAAAATATCAGTGATGGGTCGATCTTCTCCCAATGATAAGCTTCTCCTTGTGCAAGCATTGAGAAAGAGAGGACATGTAGTTGCTGTAACTGGAGATGGTACAAATGATGCTCCTGCATTACATGAGGCAGATATTGGTCTTGCAATGGGTATTCAGGGAACAGAAGTTGCCAAAGAAAGCTCAGATATTATTATTTTGGATGACAACTTTGCTTCAGTTGTGAAGGTTGTAAGGTGGGGCCGATCAGTATATGCAAATATTCAGAAATTCATCCAGTTTCAGCTCACTGTTAATGTTGCAGCTCTCATTATCAATGTCGTGGCAGCAGTATCCTCCGGTGATGTCCCACTAAATGCTGTGCAGCTTTTGTGGGTTAATCTTATTATGGACACTCTCGGAGCTTTAGCGTTGGCTACTGAACCACCAACCAATCACCTCATGGACAGGTCGCCAGTTGGTAGAAGAGAACCTCTTATAACAAATATCATGTGGAGGAATCTGCTGATACAGGCATTTTATCAAGTCTCCGTGCTGCTTGTCCTCAACTTTCGTGGTCGAAGTTTGCTTCATTTGAACCACTCTCAAGTAGAAGCTAACAAAGTGAAGAATACTTTGATTTTCAATGCATTTGTGCTTTGCCAGATTTTCAATGAATTCAATGCTCGAAAACCTGATGAGAAAAATATATTCAAAGGAGTCACTAAAAATTACCTCTTTATCGGGATCATTGCAATTACTGTTGTACTCCAGGTGATAATAATCGAGTTTCTTGGGAAATTCACATCCACGGTCAGGCTTAATTGGAAATATTGGCTTATTTCCATTATCATTGGTGTCATCAGTTGGCCTCTGGCTCTCCTTGGGAAATTCATACCTGTTCCTGAAACTCCCTTCCATGTGCTCATTATCAGAATGTTCCGTAAACGACAACCCGGGGGAGCTTAA | 3531 | 42.31 | MVEEGVWFRWGHCSSMVEEMLWSSPLWQAALVLNASRRFRYTLDLKKEEEKKEALRKIRAHAQAIRAAYLFKAAGDRLTGPTTTETSNGGFSVGQDQLAVLVKDRNVEVLEQYGGVQGVADMLQSNLEKGIVGDESDLLKRRNTYGSNTYPQKPGRSFWRFLWEAWQDLTLIILMIAAVASLVLGIKTEGIKEGWYDGGSIAFAVILVIVVTAISDYRQSLQFQNLNKEKRNIQVEVVRGGRRIEVSIYEIVVGDVIPLNIGDQVPADGILISGHSLAIDESSMTGESKIVQKHAKEPFLMSGCKVADGSGTMLVTSVGVNTEWGLLMASISEDNGEETPLQVRLNGVATLIGIVGLTVAFAVLVVLLARYFTGHTKNPDGSRQFIAGQTKVGRAVDGAIKIVTIAVTIVVVAVPEGLPLAVTLTLAYSMRKMMADKALVRRLSACETMGSATTICSDKTGTLTINQMTIVEAYVGGKKIDPPEKSELSPMLHSILVEGIALNSNGSVYVPESGGEVEVTGSPTEKAILNWGIKMGMNFDALRSESAILHVFPFSSDKKRGGVAGQRDNEVHIHWKGAAEIVLASCTKYMDEHDLSVELDEDKMKYFKRAIEDMASRSLRCVAIAYRSFEPENVPDGEEQLSKWALPEDDLVLLAIVGLKDPCRPGVKDAVRLCQKAGVKSAYSLVLFSYMRIHAFVRCKFYYAVVPYWYWVVLLIASNFCGLSKNLMQEVFLPEKTLHLVASVLPSSDLVSSISLGFHRLINTLDHVERHSSLVLLLQWCILCKRYEEDSYHLLWECRFANYLWDCSVLVRMVTGDNVQTARAIALECGILGSDSDATEPNLIEGKAFRALSDAQREEVAEKISVMGRSSPNDKLLLVQALRKRGHVVAVTGDGTNDAPALHEADIGLAMGIQGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALIINVVAAVSSGDVPLNAVQLLWVNLIMDTLGALALATEPPTNHLMDRSPVGRREPLITNIMWRNLLIQAFYQVSVLLVLNFRGRSLLHLNHSQVEANKVKNTLIFNAFVLCQIFNEFNARKPDEKNIFKGVTKNYLFIGIIAITVVLQVIIIEFLGKFTSTVRLNWKYWLISIIIGVISWPLALLGKFIPVPETPFHVLIIRMFRKRQPGGA | 1176 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 40186691 | 40206666 | - | Maker00017456 | Lcy4g1594 | 631120 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lcy4g1594 | 1176 | NCBIfam | HAD-IC family P-type ATPase | 396 | 480 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Lcy4g1594 | 1176 | NCBIfam | HAD-IC family P-type ATPase | 201 | 373 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Lcy4g1594 | 1176 | NCBIfam | HAD-IC family P-type ATPase | 859 | 972 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Lcy4g1594 | 1176 | CDD | P-type_ATPase_Ca_PMCA-like | 138 | 1025 | - | - | |
| Lcy4g1594 | 1176 | NCBIfam | calcium-translocating P-type ATPase, PMCA-type | 105 | 679 | IPR006408 | GO:0005388(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0070588(InterPro) | |
| Lcy4g1594 | 1176 | Pfam | haloacid dehalogenase-like hydrolase | 812 | 906 | - | - | |
| Lcy4g1594 | 1176 | PRINTS | Sodium/potassium-transporting ATPase signature | 449 | 470 | - | - | |
| Lcy4g1594 | 1176 | PRINTS | Sodium/potassium-transporting ATPase signature | 573 | 591 | - | - | |
| Lcy4g1594 | 1176 | PRINTS | Sodium/potassium-transporting ATPase signature | 199 | 219 | - | - | |
| Lcy4g1594 | 1176 | SMART | Cation_ATPase_N_a_2 | 112 | 186 | IPR004014 | - | |
| Lcy4g1594 | 1176 | Gene3D | - | 507 | 664 | IPR023299 | GO:0000166(InterPro) | |
| Lcy4g1594 | 1176 | Pfam | Cation transporting ATPase, C-terminus | 977 | 1153 | IPR006068 | - | |
| Lcy4g1594 | 1176 | Gene3D | - | 26 | 73 | - | - | |
| Lcy4g1594 | 1176 | FunFam | Calcium-transporting ATPase | 164 | 221 | - | - | |
| Lcy4g1594 | 1176 | FunFam | Calcium-transporting ATPase | 909 | 1157 | - | - | |
| Lcy4g1594 | 1176 | Pfam | Cation transport ATPase (P-type) | 505 | 589 | - | - | |
| Lcy4g1594 | 1176 | FunFam | Calcium-transporting ATPase | 466 | 662 | - | - | |
| Lcy4g1594 | 1176 | FunFam | Calcium-transporting ATPase | 211 | 332 | - | - | |
| Lcy4g1594 | 1176 | PANTHER | CATION TRANSPORTING ATPASE | 73 | 680 | - | GO:0005388(PANTHER)|GO:0005887(PANTHER)|GO:0019829(PANTHER)|GO:0043231(PANTHER) | |
| Lcy4g1594 | 1176 | SUPERFAMILY | Metal cation-transporting ATPase, ATP-binding domain N | 462 | 667 | IPR023299 | GO:0000166(InterPro) | |
| Lcy4g1594 | 1176 | Gene3D | - | 117 | 307 | - | - | |
| Lcy4g1594 | 1176 | Gene3D | - | 904 | 1157 | - | - | |
| Lcy4g1594 | 1176 | SUPERFAMILY | Calcium ATPase, transmembrane domain M | 113 | 1155 | IPR023298 | - | |
| Lcy4g1594 | 1176 | Gene3D | - | 308 | 495 | - | - | |
| Lcy4g1594 | 1176 | PRINTS | P-type cation-transporting ATPase superfamily signature | 916 | 928 | - | - | |
| Lcy4g1594 | 1176 | PRINTS | P-type cation-transporting ATPase superfamily signature | 807 | 817 | - | - | |
| Lcy4g1594 | 1176 | PRINTS | P-type cation-transporting ATPase superfamily signature | 280 | 294 | - | - | |
| Lcy4g1594 | 1176 | PRINTS | P-type cation-transporting ATPase superfamily signature | 456 | 470 | - | - | |
| Lcy4g1594 | 1176 | PRINTS | P-type cation-transporting ATPase superfamily signature | 892 | 911 | - | - | |
| Lcy4g1594 | 1176 | Pfam | E1-E2 ATPase | 233 | 434 | - | - | |
| Lcy4g1594 | 1176 | SUPERFAMILY | Calcium ATPase, transduction domain A | 233 | 329 | IPR008250 | - | |
| Lcy4g1594 | 1176 | Pfam | Cation transporter/ATPase, N-terminus | 113 | 181 | IPR004014 | - | |
| Lcy4g1594 | 1176 | SUPERFAMILY | HAD-like | 802 | 997 | IPR036412 | - | |
| Lcy4g1594 | 1176 | ProSitePatterns | E1-E2 ATPases phosphorylation site. | 458 | 464 | IPR018303 | - | |
| Lcy4g1594 | 1176 | FunFam | Calcium-transporting ATPase 9 plasma membrane-type | 310 | 480 | - | - | |
| Lcy4g1594 | 1176 | Coils | Coil | 45 | 65 | - | - | |
| Lcy4g1594 | 1176 | Pfam | Ca2+-ATPase N terminal autoinhibitory domain | 28 | 50 | IPR024750 | GO:0005516(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lcy1g0909 | Lcy-Chr1:7934281 | Lcy4g1594 | Lcy-Chr4:40186691 | 4.38E-275 | dispersed | |
| Lcy3g2302 | Lcy-Chr3:49898539 | Lcy4g1594 | Lcy-Chr4:40186691 | 0 | dispersed | |
| Lcy4g1594 | Lcy-Chr4:40186691 | Lcy4g1966 | Lcy-Chr4:46044449 | 6.48e-320 | dispersed | |
| Lcy4g1594 | Lcy-Chr4:40186691 | Lcy9g2037 | Lcy-Chr9:45244753 | 1.22E-281 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lcy4g1594 | K01537 | - | csv:101211703 | 1158.67 |