Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy4g1622 ATGGGTGAGGAGGCAATGGAGAAGGAGAAAGTAATGAGAGAAAACAAATTGCAAAGAAGCCATTTTGATGTGTTGGGACTTTGCTGTTCTTCAGAAGTCCCTTTGATTGAAAACATCCTCAAACCCCTCGAAGGAATCAAAGACATCTCTGTCATTGTCCCTACAAGAACTCTCATTGTTGTCCATGATTCTCTCCTCATTTCCCAACTTCAAATTGTGAAAGCTCTAAATGAAGCAAGATTGGAGGCAAATGTACAATTAAATGGAAAGGGAATTAGCAAGAAGAAATGGCCAAGTCCTTTTGCAATAGCCAGCGGGTTGCTTCTAACGGCGTCGTTTCTGAAGTATGTGTACCACCCATTGCAGTGGCTGGCCGTCGCCGCCGTCGCCGCCGGCATCTTTCCGATTCTCTTAAAAGCCGTTTCCGCCGTTCGCCACCTCAGGATCGACGTCAACATTCTTGCTATCATTGCTGTTGTGGGGACAATTGCTATGAATGACTACATGGAAGCTGGGAGTATAGTGTTTTTGTTTTCCATTGCTGAATGGCTTGAGTCAAGAGCAAGCCACAAGGCCAATGCTGCAATGTCCTCACTGATGAGCCTTGCTCCTCAAACAGCAACCATAGCTGAAACTGGAGAGATTGTGGATTCAAAAGAAGTGAAATTGAACACTGTTTTGGCTGTGAAGGCTGGAGAAGTTATTCCCATTGATGGAATTGTTGTTGAAGGAAAATGTGAAGTTGATGAGAAAACTTTGACTGGGGAATCTTTCCCAGTTGCCAAACAAAAAGATTCTCTTGTTTGGGCTGGTACCATCAACTTGAATGGTTATATTAGTGTTCAAACTACTGTTGTGGCTGAGGATTGTGTGGTGGCAAAAATGGCTGAGCTTGTAGAAGAAGCTCAAAATAACAAATCCAAAACTCAGAGATTCATTGATGAATGTGCCAAATATTACACCCCAGCTGTTCTTGTCATATCAGCATGTCTTGCAGCCATTCCAGCTGCAATGAGAGTTCACAATCTCAGCCATTGGTTTCACTTAGCTCTGGTGGTTTTGGTGAGTGCATGTCCCTGTGCCCTAATCCTCTCCACCCCGGTCGCCGCCTTCTGCGCCCTTACGAAGGCCGCCATGGCCGGAGTTCTGATCAAAGGCGGCGACCACCTTGAACTTCTTGCAAAGATTAAGGTTATGGCCTTCGACAAGACTGGCACAATCACAAGAGGTGAATTTGTGGTAACAGATTTTCGAGCTCTTTGTGATAATATTAGCTTGCACACCTTGCTTCATTGGGTTTCAAGCATTGAGAGCAAATCAAGCCATCCAATGGCAGCTGCCCTTGTCAACCATGGAAAGTTTCTTTCTGTTGATATTAAACCTGAAAATGTTGAGGAATTTGAGAACTTTCCTGGGGAAGGTGTTCGTGGGAAGATAGATGGGAACAATATTTACATTGGAAGTAGAAAAATTGCTGCAAGAGCTGGCTGCCCAACAGCTCCAAGCTCAGACGACGACGAAACAAAACAAGGGCAGACCGTCGGATATGTATTTTGCGGCACGACGTTAGCCGGATCGTTTGGTCTTTCGGACGCTTGTCGTTCGGGAGTTAGAGAGGCAATCCAGGAGATCAAGAGTTTTGGTATTAAAACAGCTATGCTCACTGGAGATTGTAATGCAGCAGCCATGCATGCACAACAACAGCTTGGGAATGCGCTCGACGTGATCCATTCGGAACTTCTACCGAAGGAAAAAGCAAATATCATAAAAAGATTCAAAGGGGATGGACCAACCGCCATGGTTGGAGATGGCTTAAATGATACCCCAGCATTAGCCACTGCTGATATTGGCATATCAATGGGCGTTTCAGGTTCAGCGCTGGCCACTGAGACTGGGAATGTGATCTTAATGTCGAATGACATGAGAAAAATCCCAAAAGCCATCAAATTAGCAAAGAAATCCCATGCAAAAGTAGTTCAAAATGTCATTTTGTCGATCGGTACGAAGACCGCAATCCTCGGCCTGGCATTCACTGGACATCCGCTCGTCTGGGCGGCCGTTCTCGCCGATGTTGGTACCTGCCTATTGGTCATCTTGAACAGCATGCTCCTTTTGAGAGGAACTGATCACAGACATGGGAAGAAATGTTGCAAATCTTCCAAACTACCATGTTTTTCGACGAAACATGGAAAATGCAACCGTAGTAATGGTCGATCGTCTCACCGGCACGATCATCATCACGATGATCATCGATGCCATGTTGTCGATGATCGATCGTCTAGTCGAGAGAATCGTGTTCATAAGCATTGTTGTTCTGAGAAAAATAATGTGCCACAGCAGAAAGAACATAAATTTCATCACAACCCTTCAAATCAATGTGAGAAAAATCAAGTTGAGAAAGAGAGTAATGGAGATTCTTCAAGGAAAGTGGCTGAATCAAATTGTAATTGCCACTCACATCATGTTGCTATTGACATTCATGAAGATACTGACTGTGAGAGAGTAGAGCACAAATAA 2517 44.5 MGEEAMEKEKVMRENKLQRSHFDVLGLCCSSEVPLIENILKPLEGIKDISVIVPTRTLIVVHDSLLISQLQIVKALNEARLEANVQLNGKGISKKKWPSPFAIASGLLLTASFLKYVYHPLQWLAVAAVAAGIFPILLKAVSAVRHLRIDVNILAIIAVVGTIAMNDYMEAGSIVFLFSIAEWLESRASHKANAAMSSLMSLAPQTATIAETGEIVDSKEVKLNTVLAVKAGEVIPIDGIVVEGKCEVDEKTLTGESFPVAKQKDSLVWAGTINLNGYISVQTTVVAEDCVVAKMAELVEEAQNNKSKTQRFIDECAKYYTPAVLVISACLAAIPAAMRVHNLSHWFHLALVVLVSACPCALILSTPVAAFCALTKAAMAGVLIKGGDHLELLAKIKVMAFDKTGTITRGEFVVTDFRALCDNISLHTLLHWVSSIESKSSHPMAAALVNHGKFLSVDIKPENVEEFENFPGEGVRGKIDGNNIYIGSRKIAARAGCPTAPSSDDDETKQGQTVGYVFCGTTLAGSFGLSDACRSGVREAIQEIKSFGIKTAMLTGDCNAAAMHAQQQLGNALDVIHSELLPKEKANIIKRFKGDGPTAMVGDGLNDTPALATADIGISMGVSGSALATETGNVILMSNDMRKIPKAIKLAKKSHAKVVQNVILSIGTKTAILGLAFTGHPLVWAAVLADVGTCLLVILNSMLLLRGTDHRHGKKCCKSSKLPCFSTKHGKCNRSNGRSSHRHDHHHDDHRCHVVDDRSSSRENRVHKHCCSEKNNVPQQKEHKFHHNPSNQCEKNQVEKESNGDSSRKVAESNCNCHSHHVAIDIHEDTDCERVEHK 838
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 41100998 41110414 - Maker00017113 Lcy4g1622 631148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy4g1622 838 PANTHER CADMIUM/ZINC-TRANSPORTING ATPASE HMA2-RELATED 12 807 IPR051014 GO:0016020(PANTHER)|GO:0022857(PANTHER)|GO:0055085(PANTHER)
Lcy4g1622 838 MobiDBLite consensus disorder prediction 728 750 - -
Lcy4g1622 838 SUPERFAMILY Calcium ATPase, transduction domain A 214 299 IPR008250 -
Lcy4g1622 838 MobiDBLite consensus disorder prediction 777 807 - -
Lcy4g1622 838 CDD P-type_ATPase_HM 101 703 - -
Lcy4g1622 838 Pfam E1-E2 ATPase 202 378 - -
Lcy4g1622 838 ProSiteProfiles Heavy-metal-associated domain profile. 18 84 IPR006121 GO:0046872(InterPro)
Lcy4g1622 838 Gene3D - 188 303 - -
Lcy4g1622 838 SFLD p-type atpase 382 653 IPR044492 -
Lcy4g1622 838 FunFam Putative cadmium/zinc-transporting ATPase 3 411 533 - -
Lcy4g1622 838 Gene3D - 411 533 IPR023299 GO:0000166(InterPro)
Lcy4g1622 838 ProSitePatterns E1-E2 ATPases phosphorylation site. 402 408 IPR018303 -
Lcy4g1622 838 FunFam Putative cadmium/zinc-transporting ATPase 3 14 87 - -
Lcy4g1622 838 NCBIfam heavy metal translocating P-type ATPase 151 704 IPR027256 GO:0006812(InterPro)|GO:0016020(InterPro)|GO:0019829(InterPro)
Lcy4g1622 838 Gene3D - 393 652 IPR023214 -
Lcy4g1622 838 Gene3D - 14 87 - -
Lcy4g1622 838 SUPERFAMILY HAD-like 399 702 IPR036412 -
Lcy4g1622 838 FunFam Copper-transporting ATPase 1, putative 189 303 - -
Lcy4g1622 838 SUPERFAMILY HMA, heavy metal-associated domain 13 84 IPR036163 GO:0046872(InterPro)
Lcy4g1622 838 MobiDBLite consensus disorder prediction 734 748 - -
Lcy4g1622 838 PRINTS P-type cation-transporting ATPase superfamily signature 601 620 - -
Lcy4g1622 838 PRINTS P-type cation-transporting ATPase superfamily signature 547 557 - -
Lcy4g1622 838 PRINTS P-type cation-transporting ATPase superfamily signature 625 637 - -
Lcy4g1622 838 PRINTS P-type cation-transporting ATPase superfamily signature 249 263 - -
Lcy4g1622 838 PRINTS P-type cation-transporting ATPase superfamily signature 400 414 - -
Lcy4g1622 838 SFLD C1.7: P-type atpase like 382 653 - -
Lcy4g1622 838 NCBIfam cadmium family heavy metal-translocating P-type ATPase 151 491 - -
Lcy4g1622 838 SUPERFAMILY Calcium ATPase, transmembrane domain M 152 394 IPR023298 -
Lcy4g1622 838 NCBIfam HAD-IC family P-type ATPase 174 679 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Lcy4g1622 838 Pfam haloacid dehalogenase-like hydrolase 396 615 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy4g1622 Lcy-Chr4:41100998 Lcy8g0947 Lcy-Chr8:33624983 9.09E-54 dispersed
Lcy12g1661 Lcy-Chr12:36995496 Lcy4g1622 Lcy-Chr4:41100998 4.40E-70 transposed
Lcy1g1707 Lcy-Chr1:17870056 Lcy4g1622 Lcy-Chr4:41100998 3.19E-67 transposed
Lcy6g0364 Lcy-Chr6:3354238 Lcy4g1622 Lcy-Chr4:41100998 2.08E-16 transposed
Lcy8g0789 Lcy-Chr8:28777764 Lcy4g1622 Lcy-Chr4:41100998 2.80E-76 transposed
Lcy2g0304 Lcy-Chr2:2456692 Lcy4g1622 Lcy-Chr4:41100998 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy4g1622 K01534 - csv:101203668 1310.82