Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy4g1635 ATGTTCTATATGCTAACGACCGACCCCGACCGACCCCGACCGACCCCTTTACTAGGTGATCAACTTGCTATTGCAAAGGAAACTGGGCGAAGACTTGGAATGGGAACAAATATGTATCCATCTTCTTCCTTACTAGGCCAACACAAGGATGAAAGCATTGCTGGCCTCCCAGTTGAAGAGTTGATTGAGAAGGCTGATGGATTTGCTGGAGTGTTTCCAGGTGATTGTTGCCTCCTGTTAATGCTTGATGATCGACGATGCTACGTATTTGTTTTTGATCCTCTAACGTTTTCGGTTTTAACGCAATGTCTAGAACACAAATACGAAATCGTCAAGAAGTTGCAAGAGAGAAAGCACATTTGTGGAATGACAGGAGATGGTGTGAATGATGCCCCTGCCTTAAAGAAGGCAGACATTGGTATTGCTGTTGCTGATGCTACTGATGCTGCACGAAGCGCTTCGGACATCGTTCTTACCGAGCCTGGATTGAGTGTTATCATCAGTGCCGTGCTGACCAGCAGAGCTATTTTCCAGAGGATGAAGAACTATACGATTTATGCAGTTTCCATCACCATTCGTATTGTGTTTGGTTTCATGTTGATTGCCCTGATTTGGAAGTTCGATTTCTCACCGTTCATGGTTTTGATTATCGCCATCTTGAACGACGGTACAATTATGACCATTTCAAAGGACAGGGTGAAGCCATCTCCATTACCTGACAGTTGGAAACTGAAGGAGATTTTCGCAACCGGTGTCGTACTAGGAGGGTACTTGGCATTGATGACGGTTATATTCTTTTGGTTAATGGACGGAACCGACTTCTTCACCGACAAATTCGGTGTAAGATCGATCCGTCTTGTTGAAGAAGAAAAGATGGCTGCTTTGTACTTGCAAGTGAGTATTGTCAGCCAGGCTTTGATTTTCGTGACTCGATCCCGTAGCTGGTCATACGTCGAGCGCCCTGGACTTCTGTTAGTCAGTGCTTTCTTCATTGCACAGCTGGTTGCAACTTTGATCGCGGTGTATGCTAACTGGGGATTCGCCAAGATCAAGGGAATCGGATGGGGATGGGCTGGTGTCATCTGGCTTTACAGCATTGTTTTCTACATTCCACTTGATATCATGAAGTTCGCCATTCGGTACATCTTGAGCGGAAAGGCATGGCTCAACTTGTTGGAAAACAAGACTGCTTTCACCACCAAGAAAGACTATGGAAAAGAGGAAAGAGAGGCTCAATGGGCTCTTGCTCAAAGGACATTACATGGACTTCAACCTCCTGAATCGACCAACATCTTCTCTGAGAAGAGCAGCTACCGAGAGCTCTCCGAGATCGCCGAGCAAGCTAAGCGACGTGCCGAGATTGCAAGGCTCCGAGAGCTCAACACGCTCAAGGGTCACGTTGAGTCCGTCGTCAAGTTGAAGGGGCTCGACATCGACACGATCCAGCAACACTACACAGTGTGA 1464 46.72 MFYMLTTDPDRPRPTPLLGDQLAIAKETGRRLGMGTNMYPSSSLLGQHKDESIAGLPVEELIEKADGFAGVFPGDCCLLLMLDDRRCYVFVFDPLTFSVLTQCLEHKYEIVKKLQERKHICGMTGDGVNDAPALKKADIGIAVADATDAARSASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVFGFMLIALIWKFDFSPFMVLIIAILNDGTIMTISKDRVKPSPLPDSWKLKEIFATGVVLGGYLALMTVIFFWLMDGTDFFTDKFGVRSIRLVEEEKMAALYLQVSIVSQALIFVTRSRSWSYVERPGLLLVSAFFIAQLVATLIAVYANWGFAKIKGIGWGWAGVIWLYSIVFYIPLDIMKFAIRYILSGKAWLNLLENKTAFTTKKDYGKEEREAQWALAQRTLHGLQPPESTNIFSEKSSYRELSEIAEQAKRRAEIARLRELNTLKGHVESVVKLKGLDIDTIQQHYTV 487
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 41307002 41309447 - Maker00017445 Lcy4g1635 631161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy4g1635 487 FunFam ATPase 4 plasma membrane-type 107 351 - -
Lcy4g1635 487 PANTHER CALCIUM-TRANSPORTING ATPASE 19 411 - GO:0005886(PANTHER)|GO:0008553(PANTHER)|GO:0015662(PANTHER)|GO:0016021(PANTHER)|GO:0034220(PANTHER)|GO:0051453(PANTHER)|GO:1902600(PANTHER)
Lcy4g1635 487 FunFam Plasma membrane ATPase 96 172 - -
Lcy4g1635 487 PRINTS H+-transporting ATPase (proton pump) signature 155 180 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Lcy4g1635 487 PRINTS H+-transporting ATPase (proton pump) signature 124 140 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Lcy4g1635 487 PRINTS H+-transporting ATPase (proton pump) signature 96 112 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Lcy4g1635 487 PRINTS H+-transporting ATPase (proton pump) signature 296 317 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Lcy4g1635 487 Gene3D - 162 351 - -
Lcy4g1635 487 SUPERFAMILY Calcium ATPase, transmembrane domain M 173 383 IPR023298 -
Lcy4g1635 487 Gene3D - 105 161 IPR023214 -
Lcy4g1635 487 Gene3D - 19 75 IPR023214 -
Lcy4g1635 487 SUPERFAMILY HAD-like 78 216 IPR036412 -
Lcy4g1635 487 Coils Coil 438 458 - -
Lcy4g1635 487 Gene3D - 436 487 - -
Lcy4g1635 487 PRINTS P-type cation-transporting ATPase superfamily signature 147 159 - -
Lcy4g1635 487 PRINTS P-type cation-transporting ATPase superfamily signature 124 143 - -
Lcy4g1635 487 NCBIfam HAD-IC family P-type ATPase 105 212 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy4g1635 Lcy-Chr4:41307002 Lcy9g0731 Lcy-Chr9:24866584 1.04E-252 dispersed
Lcy2g0298 Lcy-Chr2:2384611 Lcy4g1635 Lcy-Chr4:41307002 1.35E-277 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy4g1635 K01535 - csv:101221564 801.201