Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy4g1636 ATGGGAAACGACACCGCTTTGACTCTCGAGGAGATCAAGAACGAGACTGTTGATCTGGAGAAAATCCCTATTGAAGAAGTGTTTGAGCAGCTGAAATGTACAAGAGAAGGTTTGACTTCTCAAGAAGGGGAGAACCGTCTTCAAATCTTTGGCCCCAACAAGCTAGAAGAGAAAAAGGAAAGCAAGATTCTGAAGTTTCTTGGTTTTATGTGGAATCCCCTTTCATGGGTCATGGAAGCTGCAGCCATCATGGCCATTGCCTTGGCCAACGGCGGCGGTAAGGGCCCCGATTGGCAGGACTTCGTCGGTATCGTCTGTCTGTTGGTTATCAACTCCACCATCAGTTTCATTGAAGAGAACAATGCTGGTAATGCAGCTGCTGCTCTTATGGCTGGTCTTGCACCTAAAACTAAGATCTTGACTCTTTGCAACTGCAAAGAGGACTTCAAGAGGAAGGTGTTTTCTGTGATTGACAAGTTTGCTGAGCGTGGACTTCGATCGTTGGCTGTCGCTAGACAGGAAGTGCCTGAAAAGACTAAGGAGAGTGCTGGTGCTCCATGGCAATTCGTCGGTTTGTTGCCTCTTTTCGATCCTCCTAGACACGACAGTGCAGAAACCATCCGCAGGGCTCTCAACTTGGGAGTGAACGTCAAGATGATTACTGGTAAGTAA 672 47.47 MGNDTALTLEEIKNETVDLEKIPIEEVFEQLKCTREGLTSQEGENRLQIFGPNKLEEKKESKILKFLGFMWNPLSWVMEAAAIMAIALANGGGKGPDWQDFVGIVCLLVINSTISFIEENNAGNAAAALMAGLAPKTKILTLCNCKEDFKRKVFSVIDKFAERGLRSLAVARQEVPEKTKESAGAPWQFVGLLPLFDPPRHDSAETIRRALNLGVNVKMITGK 223
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 41309480 41313157 - Maker00017059 Lcy4g1636 631162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy4g1636 223 Gene3D - 36 139 - -
Lcy4g1636 223 PANTHER CALCIUM-TRANSPORTING ATPASE 20 140 - GO:0005886(PANTHER)|GO:0008553(PANTHER)|GO:0015662(PANTHER)|GO:0016021(PANTHER)|GO:0034220(PANTHER)|GO:0051453(PANTHER)|GO:1902600(PANTHER)
Lcy4g1636 223 FunFam Membrane H(+)-ATPase1 136 196 - -
Lcy4g1636 223 SUPERFAMILY Calcium ATPase, transmembrane domain M 18 135 IPR023298 -
Lcy4g1636 223 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 139 202 IPR023299 GO:0000166(InterPro)
Lcy4g1636 223 Gene3D - 68 122 - -
Lcy4g1636 223 Gene3D - 140 196 IPR023299 GO:0000166(InterPro)
Lcy4g1636 223 Pfam Cation transporter/ATPase, N-terminus 21 84 IPR004014 -
Lcy4g1636 223 Gene3D - 197 222 IPR023214 -
Lcy4g1636 223 PRINTS P-type cation-transporting ATPase superfamily signature 191 202 - -
Lcy4g1636 223 PRINTS P-type cation-transporting ATPase superfamily signature 213 223 - -
Lcy4g1636 223 SMART Cation_ATPase_N_a_2 18 90 IPR004014 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy4g1636 Lcy-Chr4:41309480 Lcy9g1775 Lcy-Chr9:42936955 2.08E-123 dispersed
Lcy4g1636 Lcy-Chr4:41309480 Lcy2g0298 Lcy-Chr2:2384611 1.57E-134 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy4g1636 K01535 - csv:101221564 245.358