Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy4g1646 ATGGCTGCTGATTCTTCCTTTGATGGTACCCTTTTCTTTTTCCTGCTGATTTTGTTTTGTGTTTCTAATTCTTTCATTTCAATTCTTCTGGCTTTTGAGTTCTGTGTACTGTGGTGTTCTGGTTTTGGTGCTATTTTCGACTCGCCAAAATGTAGTAAGTTGAGTATGCAAGAGAAGAGAGAACTTGTTTATGAAATTTCAAAGTCACAAGTTGCATGTGAGACACTGCAGTCATGGAGCCGCCAAGACATTTTACAAGTCCTGTGTGCAGAGATGGGGAAAGAAAGAAAATATACTGGCTTGACGAAGCAGAAAATTATAGAGCATCTTTTGAGACTCATATCCGAAAAGAGATCATCAGTGTCGGAGGTTTCGAAAAACCTTGAGCCACAATCTCCTGCAGGTGGCCATAAGACTACAAAAAGGCAGAGGAAATCTGATCAGCCAGCTCAGCTATCTGTTCCTACGAGTGACTTTCCGACCAGTAGTTCTCATAATGATTCTGGTCATACAGCATGCTGCAAAAACTTGGCTTGTCGAGCGACTTTGAATCCAGAAGATGCGTTTTGTAGAAGGTGTTCGTGCTGCATCTGTCGACAATATGATGACAACAAGGATCCTAGCTTGTGGATAAGTTGCAGTGCCGAGCCTCCATTTCAAGGTGATTCATGCAACATGTCATGTCATCTTGAATGTGCTTTAAAAGATGAAAGATCGGGAATTTCGAAAGCTGGACAAAGCAGGGGAATTGATGGGAGCTTCTACTGTGTGTCTTGTGGGAAATTAAATGATTTGCTTGGTTGCTGCAGAAAACAACTAGTCCATGCAAAAGATACGAGAAGGGTCGACATACTTTGTTATCGTGTCTCTTTGAGCCAAAAGCTTCTCCATGGAACTGAAAAGTATAAAATGCTTTATCAGATTGTTGACGACGCAGTGAGGAAGCTTGAAGCTGAAGTGGGACCAATAGCTGGCGTACCAGTAAAGATGGGTAGAGGTATTGTAAACAGGCTTTCGTCGGGACCCGAAGTGCAAAAACTCTGTGCTTCTGCTATTGAGTTACTGGACTCAATGCTCTCCAGCAAGTCCTTGCATCTTCTGCCTAATCCTGACATACAAGATGCAAACTTTGTTCCTGAAAACATGGTTAGATTTGAAGATGTTCGGTCAACGTCCCTCACTCTAGTTTTGAGTTGTGAATGTGGGTCTTCTGAGAACCAGGTCGGCTTCACAATATGGCATCGTAAGGCAGATGATGCAGATTATCCGACCGAGCCGACATGTATTCTACGACAACCGAAGGCGAGGTTTGTTGTGATGGGACTATCACCTGCTACTGAATATCATTTCAAAATTGTTCTGTTTGAAGGGACTAGAGAGTTGAGGAAGTTTGAAGTTCAGTTCTCAACAATTAGGGAGGTGGAAGAAAACCCAGGCTGCTTAGAAATTGAGAGAAGCCAAAGCCACGCAACCAACTGTAGTGATCTTTCTAATCCTTCCTCAGTTGAAGATGAAACTACCGACATTCTTCCATATGGCGATCGAACCGATAACCTAGGAAAAAACTCCACTGCCTATTCGAAGGGCACTGAAATGCTTTCCTCTGCTAATTTATCAACTGATGCTTTTAACCTCAGTGACAATGGTGAAGAAGGGACACCTGCAGGTACAGTTGCTGTGCTGGATGAGGCAAACGCTGCAGGAATGATTGGTTTGATTCCCAACTCTGTTGGATCAAAGCTCGAGAACAAGCACGGACCACCTGCCCCAAAACTCAACCCCGATAATCCGTTAAGCGCCCTTGTTCGGTCTGGAATAGAGCGTGAGCCATTTGTTGGCTGTTCTGAAGATGGCTTGCCTATTACTCCCTGCAAGCTTGAAGTGCTAAAGGATAGTCTTGGAAGGGCCGAGAGACTGAAATCCAGCTGCAAGGACCCCGACAATAGGACTCGAAAAGGAGGGGAACCCCAAGACGGTGGCACGTCAAAGATGCGAACTGGGGAAAGGCAGGACGACAAGTCTGCTGAACACAGTGTCTCGGATCGGGATTTCGAGCACTATGTGAAGGTAATTAGATGGTTAGAGTGCGAGGGACATATCGAAAAGAACTTCAGGCAGAAGTTCCTCACTTGGTACAGCTTGAGAGCATCCCAACAAGAAGTAAAGATTGTGAAGGTGTTTGTTGATACCTTCATTGAAGATCCAGCATCTCTTGCAGAACAACTTGTAGATACTTTTTCTGAAAGCATTTCGAGCAAAAAACCGACGACTACGCCGCCCGGGTTCTGCATGAAGCTATGGCACTGA 2307 44.56 MAADSSFDGTLFFFLLILFCVSNSFISILLAFEFCVLWCSGFGAIFDSPKCSKLSMQEKRELVYEISKSQVACETLQSWSRQDILQVLCAEMGKERKYTGLTKQKIIEHLLRLISEKRSSVSEVSKNLEPQSPAGGHKTTKRQRKSDQPAQLSVPTSDFPTSSSHNDSGHTACCKNLACRATLNPEDAFCRRCSCCICRQYDDNKDPSLWISCSAEPPFQGDSCNMSCHLECALKDERSGISKAGQSRGIDGSFYCVSCGKLNDLLGCCRKQLVHAKDTRRVDILCYRVSLSQKLLHGTEKYKMLYQIVDDAVRKLEAEVGPIAGVPVKMGRGIVNRLSSGPEVQKLCASAIELLDSMLSSKSLHLLPNPDIQDANFVPENMVRFEDVRSTSLTLVLSCECGSSENQVGFTIWHRKADDADYPTEPTCILRQPKARFVVMGLSPATEYHFKIVLFEGTRELRKFEVQFSTIREVEENPGCLEIERSQSHATNCSDLSNPSSVEDETTDILPYGDRTDNLGKNSTAYSKGTEMLSSANLSTDAFNLSDNGEEGTPAGTVAVLDEANAAGMIGLIPNSVGSKLENKHGPPAPKLNPDNPLSALVRSGIEREPFVGCSEDGLPITPCKLEVLKDSLGRAERLKSSCKDPDNRTRKGGEPQDGGTSKMRTGERQDDKSAEHSVSDRDFEHYVKVIRWLECEGHIEKNFRQKFLTWYSLRASQQEVKIVKVFVDTFIEDPASLAEQLVDTFSESISSKKPTTTPPGFCMKLWH 768
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 41514931 41519169 - Maker00017309 Lcy4g1646 631172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy4g1646 768 Pfam PHD - plant homeodomain finger protein 174 294 IPR032881 -
Lcy4g1646 768 MobiDBLite consensus disorder prediction 122 137 - -
Lcy4g1646 768 MobiDBLite consensus disorder prediction 122 164 - -
Lcy4g1646 768 ProSiteProfiles Fibronectin type-III domain profile. 378 477 IPR003961 GO:0005515(InterPro)
Lcy4g1646 768 PANTHER VIN3-LIKE PROTEIN 2-RELATED 47 768 IPR044514 GO:0010048(InterPro)|GO:0040029(InterPro)
Lcy4g1646 768 CDD FN3 379 453 IPR003961 GO:0005515(InterPro)
Lcy4g1646 768 MobiDBLite consensus disorder prediction 146 164 - -
Lcy4g1646 768 MobiDBLite consensus disorder prediction 637 678 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy2g0801 Lcy-Chr2:7182266 Lcy4g1646 Lcy-Chr4:41514931 2.99E-111 dispersed
Lcy4g1646 Lcy-Chr4:41514931 Lcy4g2153 Lcy-Chr4:48067167 9.19E-103 dispersed
Lcy13g1488 Lcy-Chr13:33483373 Lcy4g1646 Lcy-Chr4:41514931 1.55E-131 transposed
Lcy2g0294 Lcy-Chr2:2340058 Lcy4g1646 Lcy-Chr4:41514931 2.23E-299 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy4g1646 - - - 0.0