Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy4g1646 ATGGCTGCTGATTCTTCCTTTGATGGTACCCTTTTCTTTTTCCTGCTGATTTTGTTTTGTGTTTCTAATTCTTTCATTTCAATTCTTCTGGCTTTTGAGTTCTGTGTACTGTGGTGTTCTGGTTTTGGTGCTATTTTCGACTCGCCAAAATGTAGTAAGTTGAGTATGCAAGAGAAGAGAGAACTTGTTTATGAAATTTCAAAGTCACAAGTTGCATGTGAGACACTGCAGTCATGGAGCCGCCAAGACATTTTACAAGTCCTGTGTGCAGAGATGGGGAAAGAAAGAAAATATACTGGCTTGACGAAGCAGAAAATTATAGAGCATCTTTTGAGACTCATATCCGAAAAGAGATCATCAGTGTCGGAGGTTTCGAAAAACCTTGAGCCACAATCTCCTGCAGGTGGCCATAAGACTACAAAAAGGCAGAGGAAATCTGATCAGCCAGCTCAGCTATCTGTTCCTACGAGTGACTTTCCGACCAGTAGTTCTCATAATGATTCTGGTCATACAGCATGCTGCAAAAACTTGGCTTGTCGAGCGACTTTGAATCCAGAAGATGCGTTTTGTAGAAGGTGTTCGTGCTGCATCTGTCGACAATATGATGACAACAAGGATCCTAGCTTGTGGATAAGTTGCAGTGCCGAGCCTCCATTTCAAGGTGATTCATGCAACATGTCATGTCATCTTGAATGTGCTTTAAAAGATGAAAGATCGGGAATTTCGAAAGCTGGACAAAGCAGGGGAATTGATGGGAGCTTCTACTGTGTGTCTTGTGGGAAATTAAATGATTTGCTTGGTTGCTGCAGAAAACAACTAGTCCATGCAAAAGATACGAGAAGGGTCGACATACTTTGTTATCGTGTCTCTTTGAGCCAAAAGCTTCTCCATGGAACTGAAAAGTATAAAATGCTTTATCAGATTGTTGACGACGCAGTGAGGAAGCTTGAAGCTGAAGTGGGACCAATAGCTGGCGTACCAGTAAAGATGGGTAGAGGTATTGTAAACAGGCTTTCGTCGGGACCCGAAGTGCAAAAACTCTGTGCTTCTGCTATTGAGTTACTGGACTCAATGCTCTCCAGCAAGTCCTTGCATCTTCTGCCTAATCCTGACATACAAGATGCAAACTTTGTTCCTGAAAACATGGTTAGATTTGAAGATGTTCGGTCAACGTCCCTCACTCTAGTTTTGAGTTGTGAATGTGGGTCTTCTGAGAACCAGGTCGGCTTCACAATATGGCATCGTAAGGCAGATGATGCAGATTATCCGACCGAGCCGACATGTATTCTACGACAACCGAAGGCGAGGTTTGTTGTGATGGGACTATCACCTGCTACTGAATATCATTTCAAAATTGTTCTGTTTGAAGGGACTAGAGAGTTGAGGAAGTTTGAAGTTCAGTTCTCAACAATTAGGGAGGTGGAAGAAAACCCAGGCTGCTTAGAAATTGAGAGAAGCCAAAGCCACGCAACCAACTGTAGTGATCTTTCTAATCCTTCCTCAGTTGAAGATGAAACTACCGACATTCTTCCATATGGCGATCGAACCGATAACCTAGGAAAAAACTCCACTGCCTATTCGAAGGGCACTGAAATGCTTTCCTCTGCTAATTTATCAACTGATGCTTTTAACCTCAGTGACAATGGTGAAGAAGGGACACCTGCAGGTACAGTTGCTGTGCTGGATGAGGCAAACGCTGCAGGAATGATTGGTTTGATTCCCAACTCTGTTGGATCAAAGCTCGAGAACAAGCACGGACCACCTGCCCCAAAACTCAACCCCGATAATCCGTTAAGCGCCCTTGTTCGGTCTGGAATAGAGCGTGAGCCATTTGTTGGCTGTTCTGAAGATGGCTTGCCTATTACTCCCTGCAAGCTTGAAGTGCTAAAGGATAGTCTTGGAAGGGCCGAGAGACTGAAATCCAGCTGCAAGGACCCCGACAATAGGACTCGAAAAGGAGGGGAACCCCAAGACGGTGGCACGTCAAAGATGCGAACTGGGGAAAGGCAGGACGACAAGTCTGCTGAACACAGTGTCTCGGATCGGGATTTCGAGCACTATGTGAAGGTAATTAGATGGTTAGAGTGCGAGGGACATATCGAAAAGAACTTCAGGCAGAAGTTCCTCACTTGGTACAGCTTGAGAGCATCCCAACAAGAAGTAAAGATTGTGAAGGTGTTTGTTGATACCTTCATTGAAGATCCAGCATCTCTTGCAGAACAACTTGTAGATACTTTTTCTGAAAGCATTTCGAGCAAAAAACCGACGACTACGCCGCCCGGGTTCTGCATGAAGCTATGGCACTGA 2307 44.56 MAADSSFDGTLFFFLLILFCVSNSFISILLAFEFCVLWCSGFGAIFDSPKCSKLSMQEKRELVYEISKSQVACETLQSWSRQDILQVLCAEMGKERKYTGLTKQKIIEHLLRLISEKRSSVSEVSKNLEPQSPAGGHKTTKRQRKSDQPAQLSVPTSDFPTSSSHNDSGHTACCKNLACRATLNPEDAFCRRCSCCICRQYDDNKDPSLWISCSAEPPFQGDSCNMSCHLECALKDERSGISKAGQSRGIDGSFYCVSCGKLNDLLGCCRKQLVHAKDTRRVDILCYRVSLSQKLLHGTEKYKMLYQIVDDAVRKLEAEVGPIAGVPVKMGRGIVNRLSSGPEVQKLCASAIELLDSMLSSKSLHLLPNPDIQDANFVPENMVRFEDVRSTSLTLVLSCECGSSENQVGFTIWHRKADDADYPTEPTCILRQPKARFVVMGLSPATEYHFKIVLFEGTRELRKFEVQFSTIREVEENPGCLEIERSQSHATNCSDLSNPSSVEDETTDILPYGDRTDNLGKNSTAYSKGTEMLSSANLSTDAFNLSDNGEEGTPAGTVAVLDEANAAGMIGLIPNSVGSKLENKHGPPAPKLNPDNPLSALVRSGIEREPFVGCSEDGLPITPCKLEVLKDSLGRAERLKSSCKDPDNRTRKGGEPQDGGTSKMRTGERQDDKSAEHSVSDRDFEHYVKVIRWLECEGHIEKNFRQKFLTWYSLRASQQEVKIVKVFVDTFIEDPASLAEQLVDTFSESISSKKPTTTPPGFCMKLWH 768
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 41514931 41519169 - Maker00017309 Lcy4g1646 631172

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy4g1646 768 Pfam PHD - plant homeodomain finger protein 174 294 IPR032881 -
Lcy4g1646 768 MobiDBLite consensus disorder prediction 122 137 - -
Lcy4g1646 768 MobiDBLite consensus disorder prediction 122 164 - -
Lcy4g1646 768 ProSiteProfiles Fibronectin type-III domain profile. 378 477 IPR003961 GO:0005515(InterPro)
Lcy4g1646 768 PANTHER VIN3-LIKE PROTEIN 2-RELATED 47 768 IPR044514 GO:0010048(InterPro)|GO:0040029(InterPro)
Lcy4g1646 768 CDD FN3 379 453 IPR003961 GO:0005515(InterPro)
Lcy4g1646 768 MobiDBLite consensus disorder prediction 146 164 - -
Lcy4g1646 768 MobiDBLite consensus disorder prediction 637 678 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy4g1646 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy2g0801 Lcy-Chr2:7182266 Lcy4g1646 Lcy-Chr4:41514931 2.99E-111 dispersed
Lcy4g1646 Lcy-Chr4:41514931 Lcy4g2153 Lcy-Chr4:48067167 9.19E-103 dispersed
Lcy13g1488 Lcy-Chr13:33483373 Lcy4g1646 Lcy-Chr4:41514931 1.55E-131 transposed
Lcy2g0294 Lcy-Chr2:2340058 Lcy4g1646 Lcy-Chr4:41514931 2.23E-299 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy4g1646 . 43 505 PHD Gene Family AT4G30200 54.8 2.3e-134 476.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002200 1 4 1 1 1 2 3 2 2 2 2 2 2 2 2 3 2 2 3 2 2 2 2 2 2 2 2 4 4 1 64