Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy4g1676 ATGGATAGCGCTATGACGATGCCGAGCTCAGCCCCTAATTACTCACCTATCTCAAATCCTGGTTCAAATGAAGAAAACCCGCGTGTTAAATTCCTGTGCAGTTTCTTGGGAAGTATAATGCCTCGGCCCCAAGATGGCAAGCTCCGGTATGTTGGGGGAGAGACAAGGATTGTGAGTGTTGCAAGGGATATTTCATATGAAGAGTTGATGACTAAGATGAGGGAACTTTATGAAGGGGCTGCTGTATTGAAGTACCAGCAACCAGATGAGGATCTTGATGCTCTTGTGTCTGTTGTCAATGATGATGATGTGATTAACATGATGGAAGAGTACGATAAGGTGGGTTCGGCCGATGGGTTCACTAGGCTCAGGATATTCTTGTTTTCGCATCCTGATCAAGATGGTTCTTTGCCCTTTGTCGATGGGGATGAGAGGGATACTGAGAGGCGATATGTAGATGCCCTTAATAATTCAAATGACATGAATGATTTTGTTAGACAGCAGCAGCCAGATTCCCCTGTAATCAGTGGCATAGACGATGTGCACGGGTCAGAACATTTTTTTAATCCAATGAATATTGAAGGTAGTCTTCACACCCAGAGGAGTTCTGAGCCCTTGTCACAATATCATCTGCATCAGCTCACAATCCCTCATGGATCTGGGCAGCAGCAGCAATCTGTAGCTCAAAGGTATAATGAAATGGAACCCTCATGGAATCCTGCTTTTGTGTCACCCAGGCATCATGGTCCATATGATTCAAGACAGGTAGGAGAATATCCATCTTCTCCATCTGGTCGGTACCGTATGCCATTCCCAGATTTGCCAGATAAATATTTGGAAAGAATGCCTGAAGACTATGCAAGGCAGCAAATGAATCACCAGCATATATATGAACATCAACCACAATATAATGAGAATGTTGTCTGGCTGCCAAATGGAACAACTACTGAAAAGTCAGGTTTCCCAGGTAATATATTTCATGGACATGGTGTTCCTGATGGGAATAGTTCTTGTGAAAACTGCCGGGCAAATTTTCATCGGTATCAAACACCCGTGGAGCAAGTTAATATATTAAATGGACTTCCCCCTGAATACCCTCAGAATAGGGATGCCTTGATGCAAAAGGCAGACGTGAAGTTCCATCATTGTATTTTCCCAAGTGAGCAGAATATTGATCATCGATCTGCTTATAATGAGACACCATCCCATGAGAGAGGATGGATTGTGCAACATCAGATGAATGTGCAGGGGGATGACACGAGAGCACATGTTTCTGGGGCTGGTCGATTGAATGATCACTACATCGTGGATGGTTCTAACTCAAATTTTCCTCCTACACAAAGTAATGTAACTGATGGCTACCATGCTTCCCTGAATTTTCATGATGACGTATTTCGTGACCAGGTTGTGCCTATGTGTGTTCCTCCTGAAGATCGTGGTGTTGGTTATATGAATATGCCTTATGGATATGGAGGAGATCCTCAATATCCTCCAGTGGCGCCCAGGCATATGCCTGGAAATGCCTTGTGGCGAAATGTTCAGAATCCATTACATGTTGCTCCTCCCCCTTATGAAGCATCTGTTTCCCTTCAGCAAGGGAATGCGACCATGAATCCAGGATATATCAGAGGCATCCAGGAGGGTAGTCCACGGATTCATATTGGTATGGACCACCAAAATCCTTGGCATGAATCCTCACAGAAAATGTTGTGCATTGAGGGAGCAACTGGTTCAGATCATTTACCTGCACATGTTTTGCAGACTAACTCGACCACTGTTGGCCATGACAATCAACACTTCCCAAGTTTAGAACATATCCAACCACATCTAGGTAAGATAAACCTTGTTGCTTCTCCCATGCAGAGGTCAGATTCATCTTCAGCATTTATTCATGAACAAATTGTTGCACCTTCTCATTCTAGCCAAAATCCACAACCAAGGGCTGTTAGTGTGGTTAATGAAGCTATGATGATGGAAAGAAAAATCGTGCCTGGGGAAGGAAATGGACACCTGGTAACCGATATGGGGAAAGTTGATGTTTCTCATGCAGAGCAGAATAATACTAATGATACCTATTCCAAGGTCGCACCCCCTGAATCATTAAATTCAAATGGCATGAACACTCCAGTACAGAATGGTGATGACTTGAAACCAGCTGAAGAGACTCTTGAAGAGGCAAGACTTTCTGTCAACTGTCTCAGATTCTTACCTGAGTTGATTGCATCTGTGAAGAGAGCAGCATTAGAAGTATCTGAAGAGGAAACCACTACAGGGATACCCGAGTCAATAGGCAAAAAAGAGACAGCAAATGAACCAGACTCCTTGAATGCCCATGGGGAACCTGAGTTGGAAACTGAGAGTGACCAGCAAAGCTCCGAAATTGAGCCAACAAAGGCTGAAGCGGAAGCAATTTCAAGAGGATTACAAACAATTAAAAATGATGATCTGGAGGAAATTCGTGAACTAGGATCTGGGACTTACGGTGCTGTTTATCATGGGAAATGGAGAGGTTCTGATGTTGCAATAAAGAGGATCAAAGCTAGCTGTTTTGCTGGACGGCCGTCGGAAAGGGAACGTCTGATTGCAGACTTTTGGAAGGAAGCTTTGATATTAAGTTCTTTACACCATCCAAATGTTGTTTCCTTCTATGGTATTGTTCGTGATGGTCCTGATGGGACTTTGGCAACAGTGACAGAATTCATGGTAAATGGATCATTGAAACAGTTTTTGCACAAGAAGGACAGGACCATTGATCGTCGTAAGAGACTTATTATAGCTATGGATGCTGCATTTGGGATGGAATATTTGCATGGAAAGAATATTGTACATTTTGATTTGAAATGCGAAAACCTTTTAGTGAATATGAGAGACCCTCAGAGGCCTGTTTGCAAGATTGGTGATTTGGGATTGTCAAAGGTGAGACACCACACGTTAGTATCAGGAGGGGTTCGTGGAACTTTGCCCTGGATGGCACCGGAGCTTCTTAGCGGGAAAAGTAATATGGTGACAGAGAAGATTGATGTTTACTCATTTGGGATTGTTATGTGGGAACTGCTCACTGGAGATGAACCATATTCAGATATGCATTGTGCTTCTATAATCGGAGGAATCGTGAACAATTGCTTGCGTCCAGAAATCCCGACCTGGTGCGACCCAGAATGGAAGGCTTTAATGTCAAGCTGTTGGGACTCGGACCCAGCTATGAGACCATCATTTTCAGAAATTTCTCAGAAGCTAAGGAATATGGCAGCTGCAATGAATGTGAAATAA 3270 43.46 MDSAMTMPSSAPNYSPISNPGSNEENPRVKFLCSFLGSIMPRPQDGKLRYVGGETRIVSVARDISYEELMTKMRELYEGAAVLKYQQPDEDLDALVSVVNDDDVINMMEEYDKVGSADGFTRLRIFLFSHPDQDGSLPFVDGDERDTERRYVDALNNSNDMNDFVRQQQPDSPVISGIDDVHGSEHFFNPMNIEGSLHTQRSSEPLSQYHLHQLTIPHGSGQQQQSVAQRYNEMEPSWNPAFVSPRHHGPYDSRQVGEYPSSPSGRYRMPFPDLPDKYLERMPEDYARQQMNHQHIYEHQPQYNENVVWLPNGTTTEKSGFPGNIFHGHGVPDGNSSCENCRANFHRYQTPVEQVNILNGLPPEYPQNRDALMQKADVKFHHCIFPSEQNIDHRSAYNETPSHERGWIVQHQMNVQGDDTRAHVSGAGRLNDHYIVDGSNSNFPPTQSNVTDGYHASLNFHDDVFRDQVVPMCVPPEDRGVGYMNMPYGYGGDPQYPPVAPRHMPGNALWRNVQNPLHVAPPPYEASVSLQQGNATMNPGYIRGIQEGSPRIHIGMDHQNPWHESSQKMLCIEGATGSDHLPAHVLQTNSTTVGHDNQHFPSLEHIQPHLGKINLVASPMQRSDSSSAFIHEQIVAPSHSSQNPQPRAVSVVNEAMMMERKIVPGEGNGHLVTDMGKVDVSHAEQNNTNDTYSKVAPPESLNSNGMNTPVQNGDDLKPAEETLEEARLSVNCLRFLPELIASVKRAALEVSEEETTTGIPESIGKKETANEPDSLNAHGEPELETESDQQSSEIEPTKAEAEAISRGLQTIKNDDLEEIRELGSGTYGAVYHGKWRGSDVAIKRIKASCFAGRPSERERLIADFWKEALILSSLHHPNVVSFYGIVRDGPDGTLATVTEFMVNGSLKQFLHKKDRTIDRRKRLIIAMDAAFGMEYLHGKNIVHFDLKCENLLVNMRDPQRPVCKIGDLGLSKVRHHTLVSGGVRGTLPWMAPELLSGKSNMVTEKIDVYSFGIVMWELLTGDEPYSDMHCASIIGGIVNNCLRPEIPTWCDPEWKALMSSCWDSDPAMRPSFSEISQKLRNMAAAMNVK 1089
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 42410067 42417337 - Maker00017535 Lcy4g1676 631202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy4g1676 1089 Gene3D Phosphorylase Kinase; domain 1 801 902 - -
Lcy4g1676 1089 MobiDBLite consensus disorder prediction 749 801 - -
Lcy4g1676 1089 Pfam PB1 domain 44 128 IPR000270 GO:0005515(InterPro)
Lcy4g1676 1089 SUPERFAMILY Protein kinase-like (PK-like) 803 1077 IPR011009 -
Lcy4g1676 1089 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 48 130 - -
Lcy4g1676 1089 CDD STKc_MAP3K-like 822 1079 - -
Lcy4g1676 1089 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 904 1089 - -
Lcy4g1676 1089 ProSiteProfiles Protein kinase domain profile. 816 1082 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy4g1676 1089 ProSitePatterns Serine/Threonine protein kinases active-site signature. 941 953 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy4g1676 1089 MobiDBLite consensus disorder prediction 766 795 - -
Lcy4g1676 1089 MobiDBLite consensus disorder prediction 1 23 - -
Lcy4g1676 1089 SMART PB1_new 43 128 IPR000270 GO:0005515(InterPro)
Lcy4g1676 1089 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 809 903 - -
Lcy4g1676 1089 Pfam Protein tyrosine and serine/threonine kinase 818 1079 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy4g1676 1089 ProSitePatterns Protein kinases ATP-binding region signature. 822 843 IPR017441 GO:0005524(InterPro)
Lcy4g1676 1089 SUPERFAMILY CAD & PB1 domains 45 134 - -
Lcy4g1676 1089 CDD PB1_UP2 32 128 - -
Lcy4g1676 1089 MobiDBLite consensus disorder prediction 687 709 - -
Lcy4g1676 1089 Gene3D - 47 130 - -
Lcy4g1676 1089 SMART serkin_6 816 1085 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy4g1676 1089 PRINTS Tyrosine kinase catalytic domain signature 1006 1028 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy4g1676 1089 PRINTS Tyrosine kinase catalytic domain signature 935 953 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy4g1676 1089 PRINTS Tyrosine kinase catalytic domain signature 1050 1072 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy4g1676 1089 PRINTS Tyrosine kinase catalytic domain signature 898 911 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy4g1676 1089 Gene3D Transferase(Phosphotransferase) domain 1 903 1089 - -
Lcy4g1676 1089 PANTHER SERINE-THREONINE PROTEIN KINASE 13 1083 IPR050167 GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy2g0418 Lcy-Chr2:3498792 Lcy4g1676 Lcy-Chr4:42410067 1.20E-23 dispersed
Lcy4g0118 Lcy-Chr4:1577270 Lcy4g1676 Lcy-Chr4:42410067 7.75E-27 dispersed
Lcy4g1676 Lcy-Chr4:42410067 Lcy8g1647 Lcy-Chr8:43105935 7.77E-152 dispersed
Lcy4g1676 Lcy-Chr4:42410067 Lcy2g0145 Lcy-Chr2:1143771 5.22E-147 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65869 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy4g1676 - - - 0.0