Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy4g1679 ATGGCTTCCGGTAGTGAAAATCTCTTGGTTTTTCGTGGACCTCTCGGGAACTTCCTAGAAAGGATTAGATATGGAATGGCTTTTCTAGAGGTAAAACAGAAACTTCTAAACGAGATCGAAGCTTTAGGATTCCCAAGGGCCCGAGTTGTCCGAGCACTTCATAATACCGGAAATGTCAGCTCTGAAGTTGCAATAAATTGGATCATTGATCATGACAATGATCCAGATATAGATCAAATGCCCCTGGTAGCAATAGACATTGATATTGAATCTCCTGAACCATTTCATAACACAGAGGAAATGAAAAGGAAAGCTAGTGAACTAAGGGATCAAATACAGAAAGGAAAGGAGAAAGAAGAAAAAAAATTAGAAAGACAAAGGGAGAAGGATAGAATTCGTTCTGGTAAAGAACTGCAAGAAGCAAAAAGAATTGCAGAAGAAACTGAAAGGAAACGCTATATAGATGCTAGGCAAGCTGAGAAACAGGAGGAGAAAAGAGCAAGAGAGAAAGTTTTACAAAAGCTTGAACAAGACAAGATAGAAAGAAAAAGGAATCTTGGAATGCCCTCTGAAAGGTCTGAAAGCCTTGCTACAAAAGCTACCACAACCGGAGCAGGGGAAAAGGATGAACTTAGATCACAGAATTCACTGCCAGCAACTTCAGTTAGTAAAGCAGTCTCTATGAGAGAATGTTTAAGGTCTCTTAGGCATCATCAAAAGGATGATTCTGACAAAGTGAGAACTGCCTTCCAAACCCTCTTCATCTATGTCAGAAATGTAGCAAGAAATCCAGATGAGGAAAAGTTTAGGAAGATTCGACTCAGTAATCCTTTATTCCAGGAAAGAGTTGGGAATTTGAAAGGAGGGATCGAGTTTCTCGAGCATTGTGGCTTTCAGAGAGAAGGAGGCTTTCTGTACCTTCCCCGTGATAAAGTCGACCCGGGAGTTTTAGTCACTGCTGGATCACTGTTGGAATCTGCATTGACAAATCCCTTTTTTGGTGTTCTATAA 1011 40.45 MASGSENLLVFRGPLGNFLERIRYGMAFLEVKQKLLNEIEALGFPRARVVRALHNTGNVSSEVAINWIIDHDNDPDIDQMPLVAIDIDIESPEPFHNTEEMKRKASELRDQIQKGKEKEEKKLERQREKDRIRSGKELQEAKRIAEETERKRYIDARQAEKQEEKRAREKVLQKLEQDKIERKRNLGMPSERSESLATKATTTGAGEKDELRSQNSLPATSVSKAVSMRECLRSLRHHQKDDSDKVRTAFQTLFIYVRNVARNPDEEKFRKIRLSNPLFQERVGNLKGGIEFLEHCGFQREGGFLYLPRDKVDPGVLVTAGSLLESALTNPFFGVL 336
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 42447118 42452391 - Maker00017525 Lcy4g1679 631205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy4g1679 336 Gene3D - 33 78 - -
Lcy4g1679 336 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 30 71 IPR015940 -
Lcy4g1679 336 Gene3D - 226 324 - -
Lcy4g1679 336 Pfam PUB domain 244 313 IPR018997 -
Lcy4g1679 336 SUPERFAMILY UBA-like 22 81 IPR009060 GO:0005515(InterPro)
Lcy4g1679 336 SUPERFAMILY PUG domain-like 235 332 IPR036339 -
Lcy4g1679 336 CDD UBA_PUB_plant 30 78 - -
Lcy4g1679 336 SMART PGNneu 248 309 - -
Lcy4g1679 336 MobiDBLite consensus disorder prediction 175 222 - -
Lcy4g1679 336 Coils Coil 98 129 - -
Lcy4g1679 336 Pfam UBA-like domain 33 79 IPR015940 -
Lcy4g1679 336 PANTHER F13M7.16 PROTEIN 26 336 - -
Lcy4g1679 336 Coils Coil 158 181 - -
Lcy4g1679 336 MobiDBLite consensus disorder prediction 175 189 - -
Lcy4g1679 336 MobiDBLite consensus disorder prediction 97 136 - -
Lcy4g1679 336 MobiDBLite consensus disorder prediction 191 222 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g1411 Lcy-Chr10:37647767 Lcy4g1679 Lcy-Chr4:42447118 1.12E-07 dispersed
Lcy13g0472 Lcy-Chr13:5611674 Lcy4g1679 Lcy-Chr4:42447118 7.46E-73 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy4g1679 - - - 0.0