Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy4g1684 ATGGATCCCCAACTAATCAACGGCCACGATTTCATCTTCCGATCAAAACTCCCCGACATTTACATCCCAAACCACCTCCCTCTCCACACCTACTGCTTCGAACGCCTCTCCGAATTCCACGACCGCCCCTGCCTGATCAACGGCGCCACCGGCGAGGTCCACACCTACGCCGCCGTGGACCAGGCGGCTCGCCGGGTGGCCGCCGGGCTGAGCAAGATCGGCGTCGGACAAGGCGACGTGATCATGCTTCTGCTGCGGAACAGCCCGGAGTTCGTGTTCGCGTTCCTCGGCGCGTCGTACGGCGGCGCCATTGCGACGACGGCAAACCCGTTGTACAAGCCGGCGGAGATCGCGAAGCAGGCGGCGGCGGCGAGGGCCAAGGTGATCGTTACGCAGGCGGAGTTCGTGGAGAAGGTTCGGGGATTTGCGGAGGAACATGGGGTGAAGATTGTGTGTACGGACTCGGCGGCGGCGGGTTGTTTGAGATTCTCGGAGGTTTTGGAGGCGGATGAAAGTGAGATTCCGGCGGTGAAGATTAATTCGAATGACGTTGTGGCGCTGCCGTTCTCGTCTGGAACTACTGGAATTCCTAAAGGGGTTATGCTTACGCATAAATCTCTTGTCACTAGCGTTGCTCAGCAGGTGGACGGAGAGAATCCAAATCTAAACTTCAACAGCAAGGACGTAATAATATGTGTTCTTCCTCTGTTCCACATCTACTCTCTCAACTCCGTTCTCCTCTGCGGACTACGTGTCGGCGCCGCCATTCTCATCCTCAAAAAATACGACATGTCGTCTTTGCTCCCCCTCATTCAAACCCACAGGGCCACCATAGCCCCCTTCGTCCCTCCCATCGTCCTGGACTTCGCCAACAATCCCCACCTCCACCGTTACGACTTGTCGTCCATCAGAATCGTCATGTCGGGCGCCGCCCCCATGGCCAAGGACCTCGAGGACGCCGTCAGGGCCAGGCTCCCCAATGCCAACCTCGGACAGAGAGGCTGCAAAGAAATTTCGGCAAAAAACGTCTCTTTTCGTTTTGGCTCTAACCTCGAAAGCTTCTGCACAAAGATGATCGATCGAAGGAGGGCAAGGAGCTTGGATGCCAGCAGTGAAATTAAATCTATTTCGGATGGAGGAAGCCCAATTGCAGTGGACAAAGAGGTATTCAATGCTAAACTCCATTTCTCCCTGTACAAAAGCTTTCCTCACTGGTCTTCAATGGGGTATGGAATGACGGAGGCAGGGCCGGTGCTGTCCATGTGTTTGGGGTTTGCAAAGGAACCTTTCGAGGTGAAATCAGGTGCATGCGGGACCGTCGTAAGAAATGCTGAGATGAAGATCATCCACCCTCAAACCGGTGCCTCTTTGCCACGTAATCACCCTGGAGAGATCTGCATACGTGGCTCCCAGATCATGAAAGGCAAGTCCAACCCTCCTTCTCCCCAACTACTACTTTTTTGCACACGTTACCTTAACAACGAAGAAGCTACGGAGAAGACCATAGACAAAGATGGATGGCTCCACACAGGAGACTTAGGGTTCATCGACGACGACGACGAGATCTTCATCGTCGATCGACTGAAGGAACTGATCAAATACAAAGGTTACCAAGTGGCCCCAGCTGAGCTTGAAGCTCTCTTGACTTCAAACCCTAACATTTCTGCTGCTGCTGTCATACCTATGGAAAATGAAGCAGTAGGAGAGATCCCTGTGGCATTTGTTGTGAGATCTGAAGGTTCCAAGATTAGTGAGGATGATATCAAAAAGTATATTTCAGATCAGGTGATATATTACAAAAAGATCAGAAAGGTTATCTTTGTGGACTCAATTCCAATGGCTCCTTCAGGCAAGATATTGAGGAAAGTTTTAAAAGCTAAGTTGGAGGCTGGTGCCTTTTAA 1902 52.16 MDPQLINGHDFIFRSKLPDIYIPNHLPLHTYCFERLSEFHDRPCLINGATGEVHTYAAVDQAARRVAAGLSKIGVGQGDVIMLLLRNSPEFVFAFLGASYGGAIATTANPLYKPAEIAKQAAAARAKVIVTQAEFVEKVRGFAEEHGVKIVCTDSAAAGCLRFSEVLEADESEIPAVKINSNDVVALPFSSGTTGIPKGVMLTHKSLVTSVAQQVDGENPNLNFNSKDVIICVLPLFHIYSLNSVLLCGLRVGAAILILKKYDMSSLLPLIQTHRATIAPFVPPIVLDFANNPHLHRYDLSSIRIVMSGAAPMAKDLEDAVRARLPNANLGQRGCKEISAKNVSFRFGSNLESFCTKMIDRRRARSLDASSEIKSISDGGSPIAVDKEVFNAKLHFSLYKSFPHWSSMGYGMTEAGPVLSMCLGFAKEPFEVKSGACGTVVRNAEMKIIHPQTGASLPRNHPGEICIRGSQIMKGKSNPPSPQLLLFCTRYLNNEEATEKTIDKDGWLHTGDLGFIDDDDEIFIVDRLKELIKYKGYQVAPAELEALLTSNPNISAAAVIPMENEAVGEIPVAFVVRSEGSKISEDDIKKYISDQVIYYKKIRKVIFVDSIPMAPSGKILRKVLKAKLEAGAF 633
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 42518512 42528595 - Maker00017143 Lcy4g1684 631210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy4g1684 633 Gene3D - 5 335 IPR042099 -
Lcy4g1684 633 Pfam AMP-binding enzyme 398 475 IPR000873 -
Lcy4g1684 633 Pfam AMP-binding enzyme 34 329 IPR000873 -
Lcy4g1684 633 Pfam AMP-binding enzyme C-terminal domain 543 618 IPR025110 -
Lcy4g1684 633 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 10 625 - GO:0016405(PANTHER)
Lcy4g1684 633 SUPERFAMILY Acetyl-CoA synthetase-like 12 328 - -
Lcy4g1684 633 ProSitePatterns Putative AMP-binding domain signature. 187 198 IPR020845 -
Lcy4g1684 633 CDD 4CL 22 624 - -
Lcy4g1684 633 FunFam Long-chain-fatty-acid--CoA ligase FadD 14 340 - -
Lcy4g1684 633 Gene3D - 336 529 IPR042099 -
Lcy4g1684 633 Gene3D - 530 630 IPR045851 -
Lcy4g1684 633 FunFam 4-coumarate--CoA ligase 2 530 631 - -
Lcy4g1684 633 SUPERFAMILY Acetyl-CoA synthetase-like 392 628 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy3g1967 Lcy-Chr3:46817260 Lcy4g1684 Lcy-Chr4:42518512 2.96E-237 dispersed
Lcy3g1968 Lcy-Chr3:46826853 Lcy4g1684 Lcy-Chr4:42518512 2.08E-237 dispersed
Lcy4g1684 Lcy-Chr4:42518512 Lcy8g0946 Lcy-Chr8:33605182 9.29E-207 dispersed
Lcy4g1684 Lcy-Chr4:42518512 Lcy12g0501 Lcy-Chr12:6031207 2.77E-242 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy4g1684 K01904 - csv:101210868 538.88