Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy4g1736 ATGATTTTTCTCTCAGCGTTCGTTGAGAGTCCCATGTCACAACTGATGGGTGGTCAACGAGAAAAGTTCGTGAGGTTGGATGACTTGGACTCTAGATTGTCATCCCCATCAGATAGTGGAATGAGAAGATGTGGTTTTAATATAGATGGATTTAACCGTGCAGTCCATGGAAGTGATAAGCCATCTGGATCCTTTAAGAGAGGAATGAGAAAAGGGTCCGAAGGACTTAAATCAATCGGCCGATCACTCAAGTTTGGGGTTTCTCGAGCTGTATTTCCAGAGGATCTTAAAGAGTCAAAGAAGAAGATCTTTGATCCTCAAGACAAATTGCTCTTATTTTTGAATAAACTTTTTGTCATATCATGTATTTTGGCAATATCTGTGGACCCACTATTCTTTTATGTTCCTGTCATTAACCAAAACTCAAACTGTCTTGGCATTGATAGAAAGCTGGCAATTACAGTGACAACATTGCGGACAATTATTGATGTTTTCTATCTTATTCATATGGCTCTCCAATTCCGGACAGCTTATATTGCTCCATCATCTCGGGTGTTTGGGAGAGGTGAACTTGTGATTGATCCTGCACAAATAGCAAAGCGATACTTGCGGCGGTATTTCATCATTGATTTGGTGTCTGTGCTGCCTCTTCCACAGGTTTATAAACACTAA 672 40.33 MIFLSAFVESPMSQLMGGQREKFVRLDDLDSRLSSPSDSGMRRCGFNIDGFNRAVHGSDKPSGSFKRGMRKGSEGLKSIGRSLKFGVSRAVFPEDLKESKKKIFDPQDKLLLFLNKLFVISCILAISVDPLFFYVPVINQNSNCLGIDRKLAITVTTLRTIIDVFYLIHMALQFRTAYIAPSSRVFGRGELVIDPAQIAKRYLRRYFIIDLVSVLPLPQVYKH 223
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 43233405 43236865 + Maker00017223 Lcy4g1736 631262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy4g1736 223 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 88 220 - -
Lcy4g1736 223 Pfam Ion transport protein 117 219 IPR005821 GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy4g1736 223 SUPERFAMILY Voltage-gated potassium channels 106 221 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy4g1736 Lcy-Chr4:43233405 Lcy8g1911 Lcy-Chr8:45376747 1.70E-43 dispersed
Lcy4g1736 Lcy-Chr4:43233405 Lcy10g0315 Lcy-Chr10:5737793 3.86E-87 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy4g1736 K05391 - csv:101219180 391.349