Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy4g1738 ATGGAAGATGGGTGGAACCAGAATCACCTCCAAGGATGGTCGGGCCATGGCTTTATGATGAAACTCAAAGGATTGAAAGTGGAGCTGAGGAAATGGAATATTTTGAATCGTAATGCTATTTCCCAACTGCCCTCTCTTATCTATCAGTTGAGGAACTTGGACAACATGGGATACAGTGGGTCTTTATCTATGGATCAGAAGAGATGTCTTGGCAATGGTCGTTCTACTCTTTTTTGGCATGATTCTTGGCTGAGTTGTGGGGTTCTCGCTTTGGTTTTTCCTCGTCTTTATAGATTATCAAATCGTCCAAATGATAAGGTTGCTGACTTTTGGGCTACATCTAATGCTGCATGGGACTTGAGCCTCCAACGTAATCTAAATGATTTGGAGATAAATGAATGGACAAATCTTTCCCATTTACTTTCTTCGATCAATCTTCGATCTAGTGATGACACTTGGTCTTGGCCTATTGATCCATCTAACTCTTTTACAATCAAATCTCTTACGGGAGATATGATTCCTGATAGACCTCCTATTGGAAGCATGAGGGAGGACGGAGGAGAGTGGGGTCAAGGACAAAGTAATCAGATGATAAGTTATTCAGATTTCAGGGGGACGATCGAGGAGGGCCTCCTCCATTCGATGTTTCGTGACAAAGGAAGATTTTTGTGGCAAGCTGGGATGATCATTGTTGGGATTAATTTTGGGTCTGGTTGGACTTATCTTCAATCTCTAACTATAAGGCTTGAGGAAATGAGGGTGAAAAGACGTGATTCGGAGCAGTGGATGCATCATCGCTTGCTGCCACAAGAACTTCGGGAGAGAGTCAGGCGTTATGATCAGTACAAGTGGTTGGAGACCCGTGGGGTGGACGAACAGAGTTTGGTTCAAACTCTACCTAAGGATCTTAGGAGAGATATTAAACGGCATCTTTGTCTGGCTCTAGTAAGAAGGGTTCCTCTGTTTGAAAGCATGGACGAGAGGCTGCTTGATGCTATCTGTGAGCGGCTGAAACCATGTTTGTTTACGGAGTACACTTACATAGTGCGTGAAGGTGATCCAGTTGATGAGATGCTTTTCATTATACGTGGTCGGCTCGAGAGTGTGACTACGGATGGTGGGCGGAGTGGATTTTTCAACCGTACCTTTCTGAAAGAAGGTGATTTTTGTGGTGAAGAGCTTTTGACCTGGGCTCTGGATCCAAAATCTGGTTCGAATCTTCCATCTTCTACAAGGACTGTAAAGGCTATTACAGAGGTTGAGGCTTTTGCCCTTGTTGCCGAAGAGTTGAAATTTGTGGCCAGTCAGTTCAGGCGCCTTCACAGTAGACAGGTGCAACATACCTTCCGTTTCTACTCTCAGCAATGGAGAACCTGGGCTGCTTGCTTCATCCAAGCGGCATGGCGTCGGTATTCCAAGAGAAAGTCTATGGAACTTCGTCAAAAGGAAGAAGTTGCAGCCGAAGAATCTGAGGGATCTCAAACTGCCACAAGCGGAGGCTCTTATAGTATTCGGGCAACTTTCTTAGCCTCCAAATTTGCTGCCAATGCTCTTCGGGGCGTTCAGCGATATCGGAATGCAAAGAGTGCTCAGGAATTGATAAAACTACAGAAGCCTCCAGAGCCAGATTTTAGCGCTGATGATGCCGATTGA 1653 45.13 MEDGWNQNHLQGWSGHGFMMKLKGLKVELRKWNILNRNAISQLPSLIYQLRNLDNMGYSGSLSMDQKRCLGNGRSTLFWHDSWLSCGVLALVFPRLYRLSNRPNDKVADFWATSNAAWDLSLQRNLNDLEINEWTNLSHLLSSINLRSSDDTWSWPIDPSNSFTIKSLTGDMIPDRPPIGSMREDGGEWGQGQSNQMISYSDFRGTIEEGLLHSMFRDKGRFLWQAGMIIVGINFGSGWTYLQSLTIRLEEMRVKRRDSEQWMHHRLLPQELRERVRRYDQYKWLETRGVDEQSLVQTLPKDLRRDIKRHLCLALVRRVPLFESMDERLLDAICERLKPCLFTEYTYIVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRTFLKEGDFCGEELLTWALDPKSGSNLPSSTRTVKAITEVEAFALVAEELKFVASQFRRLHSRQVQHTFRFYSQQWRTWAACFIQAAWRRYSKRKSMELRQKEEVAAEESEGSQTATSGGSYSIRATFLASKFAANALRGVQRYRNAKSAQELIKLQKPPEPDFSADDAD 550
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 43247421 43256922 + Maker00017246 Lcy4g1738 631264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy4g1738 550 Gene3D Jelly Rolls 319 439 IPR014710 -
Lcy4g1738 550 FunFam Cyclic nucleotide-gated ion channel 1 319 437 - -
Lcy4g1738 550 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 227 538 - -
Lcy4g1738 550 SUPERFAMILY cAMP-binding domain-like 250 441 IPR018490 -
Lcy4g1738 550 SMART cnmp_10 321 452 IPR000595 -
Lcy4g1738 550 FunFam Cyclic nucleotide-gated ion channel 1 248 312 - -
Lcy4g1738 550 ProSiteProfiles IQ motif profile. 457 486 - -
Lcy4g1738 550 Gene3D Helix hairpin bin 248 312 - -
Lcy4g1738 550 ProSiteProfiles cAMP/cGMP binding motif profile. 321 405 IPR000595 -
Lcy4g1738 550 Pfam Cyclic nucleotide-binding domain 346 431 IPR000595 -
Lcy4g1738 550 CDD CAP_ED 321 452 IPR000595 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy4g1738 Lcy-Chr4:43247421 Lcy9g1763 Lcy-Chr9:42827391 3.60E-127 dispersed
Lcy7g1649 Lcy-Chr7:32529427 Lcy4g1738 Lcy-Chr4:43247421 2.28E-26 dispersed
Lcy12g0400 Lcy-Chr12:4887670 Lcy4g1738 Lcy-Chr4:43247421 1.99E-22 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy4g1738 K05391 - csv:101219180 611.683