Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy4g1762 ATGGCTGCTTCTCTGCCTTTAGAGGATGCTTGGCTGTGGCAATGGGATTTCAGAAGTTGGCCCTGTAATCAGCTGCAACAACCTTTGCAGGTAAGATCTCGTCTCGTCGGTTCGTATTTCCTTGCGTTCGATGAAGTAGGGCGGGTCGGGGACGAAGGCAGCTCCGGCACCGTCACGACGATGTACCGACGATCGTGGTCGCCGACGACGGTGCCCTCGCCGCTGTCGGGGCTGCCGGAGATGTCGCAATTGGGGTGGGGGTATTGGTTTACTTTGAGGGAGCTGGATTTGGCCACCAATTTGTTCTCAGAGGAGAATTTGATTGGAGAAGGAGGGTATGGAGTTGTGTATAGAGGGTGCCTGCTGAATGGGACACCAGTGGCAGTGAAGAAGATTTTTAATGGACAGGGCCAAGCAGAGAAGGAATTCAGAGCAGAAGTTGAGGCAATTGGGCATGTTAGACATAAGAATCTGGTTCGTCTTTTGGGATACTGCATCGAAGGGACTCATAGGATGCTGGTATACGAGTATATAAACAATGGAAGCTTAGAGCTATGGCTACATGGAGGAATGGGAGAGAATAGATTTCTTACATGGGAGGCTCGAATGAAGATCATGGTGGGAACAGCCAAAGGGCTTGCATATTTACACGAAGCCATTGAGCCAAAGGTTGTACATCGAGACATCAAGGCCAGCAACATACTAATAGATGAAAATTTCAATGCCAAAGTATCAGACTTTGGGCTAGCAAAGTTGATGGATGCTGGGAAAACTCATGTTACAACACGAGTTATGGGGACGTTTGGATATGTGGCTCCTGAATATGCAAACACGGGACTTTTGAATGAGAAGAGCGATGTGTATAGCTTTGGAGTTGTGTTGGTAGAGACAATCACGGGAAGAGATCCAGTGGACTATGGACGTCCACCCAAACAGGTGAATGTGGTAGATTGGCTGAAAATGATGATTGGAAGTAGGAGATGTGAAGAAGTGGTAGACCCAAAAATAGGAGGAAGACCATCAACAAGAGGGTTGAAAAAAGTTCTATTGGTTGCTTTGAGGTGTGTGGATCCTGATTATGAGAAGAGACCAAAGATGAGCCAAGTTGTTAGAATGCTTGAATCTCAAGATCACAATACTTCTTCTCATACACGTTGA 1158 46.89 MAASLPLEDAWLWQWDFRSWPCNQLQQPLQVRSRLVGSYFLAFDEVGRVGDEGSSGTVTTMYRRSWSPTTVPSPLSGLPEMSQLGWGYWFTLRELDLATNLFSEENLIGEGGYGVVYRGCLLNGTPVAVKKIFNGQGQAEKEFRAEVEAIGHVRHKNLVRLLGYCIEGTHRMLVYEYINNGSLELWLHGGMGENRFLTWEARMKIMVGTAKGLAYLHEAIEPKVVHRDIKASNILIDENFNAKVSDFGLAKLMDAGKTHVTTRVMGTFGYVAPEYANTGLLNEKSDVYSFGVVLVETITGRDPVDYGRPPKQVNVVDWLKMMIGSRRCEEVVDPKIGGRPSTRGLKKVLLVALRCVDPDYEKRPKMSQVVRMLESQDHNTSSHTR 385
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 43650739 43655995 + Maker00003520 Lcy4g1762 631288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy4g1762 385 CDD STKc_IRAK 108 374 - -
Lcy4g1762 385 ProSitePatterns Serine/Threonine protein kinases active-site signature. 224 236 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy4g1762 385 SMART serkin_6 102 373 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy4g1762 385 Gene3D Transferase(Phosphotransferase) domain 1 178 384 - -
Lcy4g1762 385 Pfam Protein kinase domain 103 371 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy4g1762 385 ProSiteProfiles Protein kinase domain profile. 102 385 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy4g1762 385 ProSitePatterns Protein kinases ATP-binding region signature. 108 131 IPR017441 GO:0005524(InterPro)
Lcy4g1762 385 FunFam Putative receptor-like serine/threonine-protein kinase 178 385 - -
Lcy4g1762 385 FunFam serine/threonine-protein kinase PBS1-like 77 177 - -
Lcy4g1762 385 PANTHER OS01G0323000 PROTEIN 69 382 IPR052232 -
Lcy4g1762 385 SUPERFAMILY Protein kinase-like (PK-like) 76 377 IPR011009 -
Lcy4g1762 385 Gene3D Phosphorylase Kinase; domain 1 81 177 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy4g0776 Lcy-Chr4:9268109 Lcy4g1762 Lcy-Chr4:43650739 2.00E-178 dispersed
Lcy4g1762 Lcy-Chr4:43650739 Lcy8g1625 Lcy-Chr8:42832368 4.55E-171 dispersed
Lcy9g1415 Lcy-Chr9:39135363 Lcy4g1762 Lcy-Chr4:43650739 2.37E-77 dispersed
Lcy9g1512 Lcy-Chr9:40197344 Lcy4g1762 Lcy-Chr4:43650739 2.73E-57 dispersed
Lcy12g0393 Lcy-Chr12:4806527 Lcy4g1762 Lcy-Chr4:43650739 2.50E-76 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65870 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy4g1762 - - - 0.0