Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy4g1782 ATGGAAGAGTTTTACAGGCTTAACAACTCTGTTATATCCTCATACACTAATGGTGTTGTTGCAGGTGAAGCCATTGCAAGCACTAGCTGTGGTGGGATTCATGGAGCTCTAATGGTGGATGATGATATGCTTCAGCTTGAAGCTGAGGCCACCACTGCCTTGAACATGTCTGACATGATCAAGAGTCAAATTGTCAACCATCCCCTTTATCCCAAACTGGTTTCTGCTTACATTGAATGCCAAAAAGTTGGAGCTCCACCACAAGTGGCTTCTCTTCTTGAAGAAATTGGTCGTGAAAATCACCCTCCTAGGTCTGGTATTGAGCTGGGAGCTGATCCTCAACTGGACAACTTCATGGAGTCATATTGTGAGGTTCTTCATCAATATAAGAATGAGCTATCCAAGCCATTTGATGAAGCAACAATGTTCTTGACCAACATTGAGTTGGAGTTAAGCAACCTGTGTAAAGGATCATTTACCACGACGTCGGATTCTCGCTCCGCTATGAATGATGAAGTAGTCGGGACGCCGGAGGAAGAACGGAGCAGCTTCGGCGAGGTGGAAATGCCGGGAAATCACGAGTCATTCTGCACGAGGCAAACGAACCAAGACCTCAAAGAAATGCTGCTGAAGAAATACAGTGGCTACCTCAGCAGTTTGAAGAAGGAATTCTTGAAGAAAAGGAAGAAGGAGAAGCTGCCAAAGGATGCAAGAATGGCTCTATTTGACTGGTGGAACACTCATTATAAATGGCCTTATCCCACAGAAGAGGAAAAATCAAAACTTTCTGATATAACTGGTTTGGACCAAAAGCAGATCAACAACTGGTTCATAAACCAGAGAAAGCGGCACTGGAAGCCGCCCGAAGATATGCGATTCGCGCTCATGGACGGGGTCGGGGAATGTATCAAAGGATCAAATTTTTATGACAATGGAGGAGAAACTGGAGGCCATGTAATTTGA 963 44.76 MEEFYRLNNSVISSYTNGVVAGEAIASTSCGGIHGALMVDDDMLQLEAEATTALNMSDMIKSQIVNHPLYPKLVSAYIECQKVGAPPQVASLLEEIGRENHPPRSGIELGADPQLDNFMESYCEVLHQYKNELSKPFDEATMFLTNIELELSNLCKGSFTTTSDSRSAMNDEVVGTPEEERSSFGEVEMPGNHESFCTRQTNQDLKEMLLKKYSGYLSSLKKEFLKKRKKEKLPKDARMALFDWWNTHYKWPYPTEEEKSKLSDITGLDQKQINNWFINQRKRHWKPPEDMRFALMDGVGECIKGSNFYDNGGETGGHVI 320
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 43900393 43902823 + Maker00003757 Lcy4g1782 631308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy4g1782 320 Pfam KNOX2 domain 109 155 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Lcy4g1782 320 Pfam KNOX1 domain 60 101 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
Lcy4g1782 320 SMART HOX_1 226 291 IPR001356 GO:0003677(InterPro)
Lcy4g1782 320 SUPERFAMILY Homeodomain-like 226 294 IPR009057 -
Lcy4g1782 320 MobiDBLite consensus disorder prediction 173 187 - -
Lcy4g1782 320 MobiDBLite consensus disorder prediction 166 193 - -
Lcy4g1782 320 Gene3D - 222 294 - -
Lcy4g1782 320 ProSiteProfiles ELK domain profile. 204 224 IPR005539 GO:0003677(InterPro)
Lcy4g1782 320 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 57 296 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Lcy4g1782 320 CDD homeodomain 236 287 IPR001356 GO:0003677(InterPro)
Lcy4g1782 320 Pfam Homeobox KN domain 244 283 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
Lcy4g1782 320 SMART ELK_2 204 225 IPR005539 GO:0003677(InterPro)
Lcy4g1782 320 Pfam ELK domain 204 225 IPR005539 GO:0003677(InterPro)
Lcy4g1782 320 ProSiteProfiles 'Homeobox' domain profile. 224 287 IPR001356 GO:0003677(InterPro)
Lcy4g1782 320 SMART KNOX1_2 58 102 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
Lcy4g1782 320 SMART KNOX2_2 105 156 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Lcy4g1782 320 ProSitePatterns 'Homeobox' domain signature. 262 285 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy4g1782 Lcy-Chr4:43900393 Lcy9g1996 Lcy-Chr9:44828107 6.70E-77 dispersed
Lcy4g1782 Lcy-Chr4:43900393 Lcy2g0672 Lcy-Chr2:5747501 8.09E-79 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20001 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy4g1782 - - - 0.0