Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy4g1787 | ATGCTTAAGTCATCAAGGAGAAAATATGGAAAGCCAGAGAGAAAGAGTAAGAGGAGAGTTCAGAGAATGAGGTTCGAGATCCCTTCTTCAGTGACGAAGAAGGGTTTAAATATCTTTTCCTGCCTTAGGGTTTCTAGGCTTACGGAGACAATTCGGACTGAACCAGGTGGAATCGGGGCGTCCAGGGGCACCAGGGACCGAGCGGAGGGGAGGAAACTCGGCCCACACGAGTGGGCCGAGTGGTCTTCGGCTCACCCTCCTCTGGGGTCCGCTTCCTGGTCATGCTTCTGGGTTGGTGTCGCGCTGTCATGCTTAGTTCTCGAATTTCGGACGCAAAAATTCCCAGCCATTGCCCCTCTTGGTGTGAGCATGGAAGGCCCTCTGTTGCAAAAAGTGTGCGCCTTGTACCACCAAATCTCGAGCCTCACCTGCCTCAAGCCTTCCAAACATGTCGACACTCTTTTCACCCAACTCGTCCTCACGTGCTCCCCGCCCGCCCCTGGCCTCGACATCGCCTCCCTTCCCGACCCACTTCGAGCCATGAGGGCTCATCTCATCCGCCTCTGCGCCACCGCCGAGGCCCTCCTCGAACTTCACTTCTCTGCCATTTTGGCCACCTCCTTCCACAACCCCATTCACAACTTGTCCATCTTCCCTTACTACTCTAATTACTTGAAGCTCTCCCTTCTCGAGTTCGATATCTTGACGTCTCATTGCCCTCGCCTGCCCGCTACCATTGCGTTCGTTGGCTCTGGCCCCCTCCCGCTCTCCTCCATTGTCATGGCCTCCACTCATCTCAAGGGTACTGTTTTCCACAATTTTGACATCGATTCGACTGCGAACTCCATGGCGGGTCGGTTGGTCAGCTCCGACCCGGACCTGTCGCGGCGGATGGTGTTTCACACGATGGATGTAATGGAGGTGACGAAGGCATTGGGGGAGTACGAGGTGGTGTTTCTAGCAGCATTGGTGGGGTTGGAAGAGGAAGATAAGGCAAGGGTTTTGAGGCATTTGGGGAAGCATATGGCGCCCGGGGCTTACTTGATGCTGAGGAGTGCACATGGAGCTAGGGCTTTTTTGTACCCTGTTGTCGATGTTTGTGACGTTGAAGCTTCTGGGTTTGAGATTCTTTCTGTGTTTCACCCAACTGACGAAGTCATAAACTCTGTTGTTATTGCAAGGAAGGTGTTCGATCTTATTCCAGAGGCTGAAGAAAACTCTGTTGAAGAAGATGATGACGAGAAGCGAGGTGTTTTAGTTAACACCCCTGTTTTGTTGGCTGAAAAATGCTCTGGGTTTAAAGGATTTGGTCCCATGATCGAGGAGCTTGCCATGGAAGAGCAACTTTCTTGA | 1353 | 52.62 | MLKSSRRKYGKPERKSKRRVQRMRFEIPSSVTKKGLNIFSCLRVSRLTETIRTEPGGIGASRGTRDRAEGRKLGPHEWAEWSSAHPPLGSASWSCFWVGVALSCLVLEFRTQKFPAIAPLGVSMEGPLLQKVCALYHQISSLTCLKPSKHVDTLFTQLVLTCSPPAPGLDIASLPDPLRAMRAHLIRLCATAEALLELHFSAILATSFHNPIHNLSIFPYYSNYLKLSLLEFDILTSHCPRLPATIAFVGSGPLPLSSIVMASTHLKGTVFHNFDIDSTANSMAGRLVSSDPDLSRRMVFHTMDVMEVTKALGEYEVVFLAALVGLEEEDKARVLRHLGKHMAPGAYLMLRSAHGARAFLYPVVDVCDVEASGFEILSVFHPTDEVINSVVIARKVFDLIPEAEENSVEEDDDEKRGVLVNTPVLLAEKCSGFKGFGPMIEELAMEEQLS | 450 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 43931314 | 43937633 | - | Maker00003699 | Lcy4g1787 | 631313 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy4g1787 | 450 | Pfam | Nicotianamine synthase protein | 127 | 396 | IPR004298 | GO:0030410(InterPro)|GO:0030418(InterPro) | |
Lcy4g1787 | 450 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
Lcy4g1787 | 450 | ProSiteProfiles | Nicotianamine synthase (NAS)-like family profile. | 120 | 400 | IPR004298 | GO:0030410(InterPro)|GO:0030418(InterPro) | |
Lcy4g1787 | 450 | MobiDBLite | consensus disorder prediction | 1 | 18 | - | - | |
Lcy4g1787 | 450 | SUPERFAMILY | S-adenosyl-L-methionine-dependent methyltransferases | 231 | 361 | IPR029063 | - | |
Lcy4g1787 | 450 | PANTHER | NICOTIANAMINE SYNTHASE 3 | 128 | 402 | IPR004298 | GO:0030410(InterPro)|GO:0030418(InterPro) | |
Lcy4g1787 | 450 | Gene3D | Vaccinia Virus protein VP39 | 171 | 397 | IPR029063 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy13g1200 | Lcy-Chr13:28520461 | Lcy4g1787 | Lcy-Chr4:43931314 | 8.69E-190 | dispersed | |
Lcy2g0281 | Lcy-Chr2:2252853 | Lcy4g1787 | Lcy-Chr4:43931314 | 2.90E-34 | dispersed | |
Lcy4g1787 | Lcy-Chr4:43931314 | Lcy12g0184 | Lcy-Chr12:2247346 | 1.70E-15 | dispersed | |
Lcy4g1787 | Lcy-Chr4:43931314 | Lcy4g1788 | Lcy-Chr4:43946117 | 5.62E-110 | tandem | |
Lcy2g2337 | Lcy-Chr2:49174825 | Lcy4g1787 | Lcy-Chr4:43931314 | 4.67E-121 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lcy4g1787 | K05953 | - | csv:101203651 | 480.715 |