Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy4g1787 ATGCTTAAGTCATCAAGGAGAAAATATGGAAAGCCAGAGAGAAAGAGTAAGAGGAGAGTTCAGAGAATGAGGTTCGAGATCCCTTCTTCAGTGACGAAGAAGGGTTTAAATATCTTTTCCTGCCTTAGGGTTTCTAGGCTTACGGAGACAATTCGGACTGAACCAGGTGGAATCGGGGCGTCCAGGGGCACCAGGGACCGAGCGGAGGGGAGGAAACTCGGCCCACACGAGTGGGCCGAGTGGTCTTCGGCTCACCCTCCTCTGGGGTCCGCTTCCTGGTCATGCTTCTGGGTTGGTGTCGCGCTGTCATGCTTAGTTCTCGAATTTCGGACGCAAAAATTCCCAGCCATTGCCCCTCTTGGTGTGAGCATGGAAGGCCCTCTGTTGCAAAAAGTGTGCGCCTTGTACCACCAAATCTCGAGCCTCACCTGCCTCAAGCCTTCCAAACATGTCGACACTCTTTTCACCCAACTCGTCCTCACGTGCTCCCCGCCCGCCCCTGGCCTCGACATCGCCTCCCTTCCCGACCCACTTCGAGCCATGAGGGCTCATCTCATCCGCCTCTGCGCCACCGCCGAGGCCCTCCTCGAACTTCACTTCTCTGCCATTTTGGCCACCTCCTTCCACAACCCCATTCACAACTTGTCCATCTTCCCTTACTACTCTAATTACTTGAAGCTCTCCCTTCTCGAGTTCGATATCTTGACGTCTCATTGCCCTCGCCTGCCCGCTACCATTGCGTTCGTTGGCTCTGGCCCCCTCCCGCTCTCCTCCATTGTCATGGCCTCCACTCATCTCAAGGGTACTGTTTTCCACAATTTTGACATCGATTCGACTGCGAACTCCATGGCGGGTCGGTTGGTCAGCTCCGACCCGGACCTGTCGCGGCGGATGGTGTTTCACACGATGGATGTAATGGAGGTGACGAAGGCATTGGGGGAGTACGAGGTGGTGTTTCTAGCAGCATTGGTGGGGTTGGAAGAGGAAGATAAGGCAAGGGTTTTGAGGCATTTGGGGAAGCATATGGCGCCCGGGGCTTACTTGATGCTGAGGAGTGCACATGGAGCTAGGGCTTTTTTGTACCCTGTTGTCGATGTTTGTGACGTTGAAGCTTCTGGGTTTGAGATTCTTTCTGTGTTTCACCCAACTGACGAAGTCATAAACTCTGTTGTTATTGCAAGGAAGGTGTTCGATCTTATTCCAGAGGCTGAAGAAAACTCTGTTGAAGAAGATGATGACGAGAAGCGAGGTGTTTTAGTTAACACCCCTGTTTTGTTGGCTGAAAAATGCTCTGGGTTTAAAGGATTTGGTCCCATGATCGAGGAGCTTGCCATGGAAGAGCAACTTTCTTGA 1353 52.62 MLKSSRRKYGKPERKSKRRVQRMRFEIPSSVTKKGLNIFSCLRVSRLTETIRTEPGGIGASRGTRDRAEGRKLGPHEWAEWSSAHPPLGSASWSCFWVGVALSCLVLEFRTQKFPAIAPLGVSMEGPLLQKVCALYHQISSLTCLKPSKHVDTLFTQLVLTCSPPAPGLDIASLPDPLRAMRAHLIRLCATAEALLELHFSAILATSFHNPIHNLSIFPYYSNYLKLSLLEFDILTSHCPRLPATIAFVGSGPLPLSSIVMASTHLKGTVFHNFDIDSTANSMAGRLVSSDPDLSRRMVFHTMDVMEVTKALGEYEVVFLAALVGLEEEDKARVLRHLGKHMAPGAYLMLRSAHGARAFLYPVVDVCDVEASGFEILSVFHPTDEVINSVVIARKVFDLIPEAEENSVEEDDDEKRGVLVNTPVLLAEKCSGFKGFGPMIEELAMEEQLS 450
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
4 43931314 43937633 - Maker00003699 Lcy4g1787 631313
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lcy4g1787 450 Pfam Nicotianamine synthase protein 127 396 IPR004298 GO:0030410(InterPro)|GO:0030418(InterPro)
Lcy4g1787 450 MobiDBLite consensus disorder prediction 1 20 - -
Lcy4g1787 450 ProSiteProfiles Nicotianamine synthase (NAS)-like family profile. 120 400 IPR004298 GO:0030410(InterPro)|GO:0030418(InterPro)
Lcy4g1787 450 MobiDBLite consensus disorder prediction 1 18 - -
Lcy4g1787 450 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 231 361 IPR029063 -
Lcy4g1787 450 PANTHER NICOTIANAMINE SYNTHASE 3 128 402 IPR004298 GO:0030410(InterPro)|GO:0030418(InterPro)
Lcy4g1787 450 Gene3D Vaccinia Virus protein VP39 171 397 IPR029063 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g1200 Lcy-Chr13:28520461 Lcy4g1787 Lcy-Chr4:43931314 8.69E-190 dispersed
Lcy2g0281 Lcy-Chr2:2252853 Lcy4g1787 Lcy-Chr4:43931314 2.90E-34 dispersed
Lcy4g1787 Lcy-Chr4:43931314 Lcy12g0184 Lcy-Chr12:2247346 1.70E-15 dispersed
Lcy4g1787 Lcy-Chr4:43931314 Lcy4g1788 Lcy-Chr4:43946117 5.62E-110 tandem
Lcy2g2337 Lcy-Chr2:49174825 Lcy4g1787 Lcy-Chr4:43931314 4.67E-121 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy4g1787 K05953 - csv:101203651 480.715