Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy4g1788 ATGTGTTGCCAAGGTCTCCTTTTGGTCCAAAAAGTCTCAGAACTTTACCACAAAATCTCCACTCTCGAAAGCCTCAAACCCTCCAAAGATGTCAACTCCCTCTTCTCTCAACTCGTCCTCATCTGCTCGCCTCCGCCGCCGTCTCCGCCGCCCATAGACGTCTCCAAGCTCTGCTCCGCCGTCCAAAATATGAGATCCCATCTCATCAAGCTCTGCGGCGAGGCTGAGGCCCTTCTCGAGCACCATTACTCCACCATTTTAGCCTCCCACCAAAACCCACTTGACCATCTCTCCATTTTCCCTTATTACTCCAACTATCTCAAACTAACCCACCTTGAATTCTCCATTTTGACCCGTCACGCGCCCCACGCGCCGCCGTCCAAGGTGGCATTTGTTGGCTCCGGTGCGCTTCCGTTCTCGTCCATCATCATGGCCTTGAAGTACCTCCCGACGACCGAGTTTCACAACTTCGACGTCGACCCGTCTGCCAATGCAAAAGCGACGGCGTTGGTGGCGGGCGACGCGGACTTGTCGAGGCGGATGACGTTCCACACGACGGATATCATGGAGGTGAATGCGAGTGAGTTGGGGGAGTTTGAGGTGGTGTTTTTGGCGGCGTTGGTGGGGATGGAGAGGGAGGAGAAGGTGAAGGTGATCGAGCATTTGGGGAAGAACATGGCCGGCGGCGCGTTGTTGATGTTGAGGAGCGCGTATGGTGCACGCGCGTTTCTTTATCCGGTGGTGGAAGCTTGTGATCTTCGAGGGTTTGAGATTCTTACCGTGTTTCATCCGACTGACGAAGTTATCAATTCGATCGTGTTGGCACGATTATAA 834 54.08 MCCQGLLLVQKVSELYHKISTLESLKPSKDVNSLFSQLVLICSPPPPSPPPIDVSKLCSAVQNMRSHLIKLCGEAEALLEHHYSTILASHQNPLDHLSIFPYYSNYLKLTHLEFSILTRHAPHAPPSKVAFVGSGALPFSSIIMALKYLPTTEFHNFDVDPSANAKATALVAGDADLSRRMTFHTTDIMEVNASELGEFEVVFLAALVGMEREEKVKVIEHLGKNMAGGALLMLRSAYGARAFLYPVVEACDLRGFEILTVFHPTDEVINSIVLARL 277
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 43946117 43946950 - Maker00003427 Lcy4g1788 631314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy4g1788 277 Gene3D Vaccinia Virus protein VP39 5 277 IPR029063 -
Lcy4g1788 277 ProSiteProfiles Nicotianamine synthase (NAS)-like family profile. 1 277 IPR004298 GO:0030410(InterPro)|GO:0030418(InterPro)
Lcy4g1788 277 Pfam Nicotianamine synthase protein 7 276 IPR004298 GO:0030410(InterPro)|GO:0030418(InterPro)
Lcy4g1788 277 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 83 229 IPR029063 -
Lcy4g1788 277 PANTHER NICOTIANAMINE SYNTHASE 3 8 276 IPR004298 GO:0030410(InterPro)|GO:0030418(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy2g2337 Lcy-Chr2:49174825 Lcy4g1788 Lcy-Chr4:43946117 4.67E-110 dispersed
Lcy4g1787 Lcy-Chr4:43931314 Lcy4g1788 Lcy-Chr4:43946117 5.62E-110 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy4g1788 K05953 - csv:101219339 466.077