Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy4g1797 ATGGGAGGTTTGAGTGAGGGTCTAACACAGTTGTTGATACCTGCAGCTGCCTTGCTTGGTATTGGATTTGCCCTTCTTCAATGGCTTTTGGTCTCAAGAGTTAAGGTTTCTGGCTATGCTGATGACGAAAGCCAAGAAAACAATTTGATTGAAGGAGGACAAGAGGAAGGTATTGACGATGCCGAGGTTGTCGTGAAGTGTGCCGAAATCCAGAAGGCCATTTCTGTTGGAGCAACTTCTTTTTTGTTCACTCAGTATAAGTACCTTGTTGTCTTCATGGGAGCATTTGGAGCCATCATTTTTCTGTTCCTTGGTTCAGTTAAGAGCTTCAGCACCAAAAGTGAACCTTGCACATACAACAAAGGACAGATGTGTAAACCAGCTCTAGCCAATGCCATCTTTAGCACAATTGCCTTCTTTCTAGGTGCTCTCACCTCAGTTCTATCTGGTTTCCTTGGAATGAAGATTGCAACTTATGCAAATGCCCGAACGAGCCTAGAAGCACGGAAAGGCATTGGAAAAGCATTCGCTATCGCTTTTCGCTCCGGTGCTGTGATGGGATTCCTTCTAGCTGCCAATGGCCTCCTTGTATTATATGCCTCCATCAATTTGTTTAAGCTGTATTATGGCGACGACTGGGAAGGACTGTACGAATCTATCACGGGTTACGGTCTTGGAGGCTCTTCAATGGCGCTGTTTGGAAGAGTTGGGGGAGGCATATACACAAAAGCAGCTGATGTTGGAGCTGATCTTGTTGGGAAAATTGAAAAGAATATCCCTGAAGACGATCCACGAAATCCCGCTGTCATAGCTGACAATGTGGGTGACAATGTAGGAGATATTGCAGGAATGGGATCTGACTTATTTGGATCTTATGCAGAATCAACCTGTGCTGCACTTTTCGTAGCGTCGATATCATCATTCGGCTTCACACATAACTATGCAGCCATGTCGTACCCTTTACTTATAAGCTCAATGGGCATAGTGATTTGCTTAATAACTACACTTTTTGCAACTGATCTCATTGAAATTAAGAAAGTGAGCGAAATTGAACCGTCGTTAAAGCGACAGCTTCTTATCTCCACTGTGCTGATGACAGCAGGAGTAGCTTGTGTCAGCTTTGTTGCTTTACCTTCAAAATTCACTCTCTACGATTTCGGCAACGACAAGGTCGTGAAGAACTGGCACCTTTTCTTCTGTGTTGTGACAGGATTGTGGGCAGGACTTGTTATTGGATATACAACTGAGTATTACACTAGCAATGCTTACAGTCCAGTGCAGGATGTGGCTGATTCTTGTAGAACCGGTGCTGCAACGAATTTAATATTTGGATTAGCTCTCGGATACAAATCCGTCATCATTCCCATATTTTCGATTGCCTTATCCATTTACGTGAGCTTCCGCTTGGCAGCCATGTACGGTATCGCAATGGCTGCTTTGGGAATGCTTAGCACCATTGCCACTGGTCTAGCCATTGATGCTTATGGACCTATAAGTGACAATGCAGGTGGAATAGCCGAAATGGCTGGAATGAGCCACGAGATACGTGAGAGAACCGATGCTTTAGATGCTGCAGGAAACACAACCGCAGCCATAGGAAAGGGCTTTGCCATTGGATCAGCTGCTCTTGTTTCCCTCGCCTTGTTCGGCGCCTTTGTGAGCCGAGCAGGCATCGAAACAGTCAACATCTTGAACCCGAAAGTCTTCATTGGATTGATAGTAGGTGCAATGCTTCCATACTGGTTTTCAGCCATGACAATGAAGAGCGTTGGCAGTGCAGCGCTGAAGATGGTTGAGGAAGTTCGACGACAATTCAACTCTATCCCGGGGTTGATGGAAGGCAGGACGAAGCCGGACTATGCAAATTGTGTCAAGATATCGACCGATGCGTCACTTAGAGAGATGATCCCACCTGGTGCTCTGGTTTTGGTAACACCACTCATTGCTGGAACATTCTTTGGAGTTGAAACTCTTGCTGGCCTTCTGGCAGGTTCCCTTGTTTCTGGTGTGCAGGTTGCAATCTCTGCTTCAAACACAGGTGGGGCTTGGGACAATGCCAAAAAGTACATAGAGGCCGGAGCAAGCGAACATGCTAAAGCGCTCGGCCCCAAAGGGTCAGATGCTCACAAGGCAGCTGTGATAGGTGACACAGTTGGGGACCCTCTCAAAGACACTTCTGGTCCTTCACTCAATATTCTCATCAAGCTCATGGCTGTTGAGTCTTTGGTTTTTGCCCCATTCTTTGCTGCTCATGGTGGCCTCATCTTCAAGCATATATAA 2280 46.1 MGGLSEGLTQLLIPAAALLGIGFALLQWLLVSRVKVSGYADDESQENNLIEGGQEEGIDDAEVVVKCAEIQKAISVGATSFLFTQYKYLVVFMGAFGAIIFLFLGSVKSFSTKSEPCTYNKGQMCKPALANAIFSTIAFFLGALTSVLSGFLGMKIATYANARTSLEARKGIGKAFAIAFRSGAVMGFLLAANGLLVLYASINLFKLYYGDDWEGLYESITGYGLGGSSMALFGRVGGGIYTKAADVGADLVGKIEKNIPEDDPRNPAVIADNVGDNVGDIAGMGSDLFGSYAESTCAALFVASISSFGFTHNYAAMSYPLLISSMGIVICLITTLFATDLIEIKKVSEIEPSLKRQLLISTVLMTAGVACVSFVALPSKFTLYDFGNDKVVKNWHLFFCVVTGLWAGLVIGYTTEYYTSNAYSPVQDVADSCRTGAATNLIFGLALGYKSVIIPIFSIALSIYVSFRLAAMYGIAMAALGMLSTIATGLAIDAYGPISDNAGGIAEMAGMSHEIRERTDALDAAGNTTAAIGKGFAIGSAALVSLALFGAFVSRAGIETVNILNPKVFIGLIVGAMLPYWFSAMTMKSVGSAALKMVEEVRRQFNSIPGLMEGRTKPDYANCVKISTDASLREMIPPGALVLVTPLIAGTFFGVETLAGLLAGSLVSGVQVAISASNTGGAWDNAKKYIEAGASEHAKALGPKGSDAHKAAVIGDTVGDPLKDTSGPSLNILIKLMAVESLVFAPFFAAHGGLIFKHI 759
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 44010485 44016580 + Maker00003373 Lcy4g1797 631323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy4g1797 759 PANTHER K(+)-INSENSITIVE PYROPHOSPHATE-ENERGIZED PROTON PUMP 12 757 IPR004131 GO:0004427(InterPro)|GO:0009678(InterPro)|GO:0016020(InterPro)|GO:1902600(InterPro)
Lcy4g1797 759 NCBIfam V-type H(+)-translocating pyrophosphatase 9 754 IPR004131 GO:0004427(InterPro)|GO:0009678(InterPro)|GO:0016020(InterPro)|GO:1902600(InterPro)
Lcy4g1797 759 Hamap Putative K(+)-stimulated pyrophosphate-energized sodium pump [hppA]. 7 749 IPR004131 GO:0004427(InterPro)|GO:0009678(InterPro)|GO:0016020(InterPro)|GO:1902600(InterPro)
Lcy4g1797 759 PIRSF H+-PPtase 17 757 IPR004131 GO:0004427(InterPro)|GO:0009678(InterPro)|GO:0016020(InterPro)|GO:1902600(InterPro)
Lcy4g1797 759 Pfam Inorganic H+ pyrophosphatase 65 744 IPR004131 GO:0004427(InterPro)|GO:0009678(InterPro)|GO:0016020(InterPro)|GO:1902600(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy2g0688 Lcy-Chr2:5979234 Lcy4g1797 Lcy-Chr4:44010485 0 dispersed
Lcy4g1797 Lcy-Chr4:44010485 Lcy6g2388 Lcy-Chr6:48686649 2.67E-78 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy4g1797 K23025 - csv:101205277 1412.13