Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy4g1802 TTCCTCTCATTCGATGTTCTTCTGGCTTTTGAATCTGTTTATGTTAGGTGCTGTTTGCCGATGGCTCATACCAGCAATACTGCAGCTGGAGTTGATAACACCTTCAGAAGAAAATTTGATCGAGAGGAGTATTTGGAACGAGCTCGTGACCGTGAAAAACAGGAGGCCGAGAGGGTTAAGTCCAAATTGAAAGGTCCACCAGTGCAAAGAAAACCATTGAAACATAGAGATTACGAGGTAGACCTTGAGTCCCGATTGGGAAAAACCCAGGTCGTCACTCCAGTTGCGCCTCTAAGCCAGCAGGCTGGATACTACTGTTCCGTTTGTGAATGTGTGGTCAAGGATTCTGCAAATTACTTGGATCATATCAATGGAAAGAAACATCAGAGAGCCTTGGGTATGTCCATGCGGGTAGAACGGGCATCACTTGAACAGGTGCAGGAGCGGTTTGAAGTTCTTAAAAAGAGAAAAACGCCTGGAAGCTTCACAGAGCAAGATCTTGAAGAGCGTATACTAAAGCAGCAACAAGAAGAAGAACAACGAAAGCGCGAGCGTCGAGAAAGGAAGAAAGAAAAGAAGAAAGAGAAGGCTGCAGAAGAGGAACCAGAAGTAGATCCCGACGTAGCGGCAATGATGGGATTTGGGGGCTTCCGTTCATCCAAGAAGTGA 669 46.04 FLSFDVLLAFESVYVRCCLPMAHTSNTAAGVDNTFRRKFDREEYLERARDREKQEAERVKSKLKGPPVQRKPLKHRDYEVDLESRLGKTQVVTPVAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVERASLEQVQERFEVLKKRKTPGSFTEQDLEERILKQQQEEEQRKRERRERKKEKKKEKAAEEEPEVDPDVAAMMGFGGFRSSKK 222
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 44046814 44049851 - Maker00003438 Lcy4g1802 631328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy4g1802 222 Gene3D Classic Zinc Finger 99 136 - -
Lcy4g1802 222 MobiDBLite consensus disorder prediction 157 222 - -
Lcy4g1802 222 Coils Coil 42 62 - -
Lcy4g1802 222 Pfam Zinc-finger of C2H2 type 104 128 IPR013087 -
Lcy4g1802 222 Coils Coil 164 201 - -
Lcy4g1802 222 SMART ZnF_U1_5 101 135 IPR003604 GO:0003676(InterPro)|GO:0008270(InterPro)
Lcy4g1802 222 FunFam zinc finger matrin-type protein 2-like 98 136 - -
Lcy4g1802 222 SUPERFAMILY beta-beta-alpha zinc fingers 100 145 IPR036236 -
Lcy4g1802 222 PANTHER ZINC FINGER MATRIN-TYPE PROTEIN 2 28 222 IPR040107 GO:0000398(InterPro)|GO:0000398(PANTHER)|GO:0005681(InterPro)|GO:0046540(PANTHER)
Lcy4g1802 222 MobiDBLite consensus disorder prediction 157 203 - -
Lcy4g1802 222 MobiDBLite consensus disorder prediction 50 70 - -
Lcy4g1802 222 Coils Coil 136 156 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy4g1802 K12848 - csv:101206387 345.51