Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy4g1808 ATGGCGTCGAGGAATCGGACTTTGATTTTTAGGAAATACAGGGACGCGTTGAGGAGTGTGAGGGTTCCTACCAGCTCTTCGCCTGCTTCTGCATCGCCATCGACTAGTTCTGGCGCTGGTGGACCGGTGATTGAATTGGTTAGCTCGTCTTTGTTGCATCAGAATCGGTCGTACGCTCCCTTAAGTACTGAGGATCCGGGTAATTCAAGTAAGGGTGCTGTTACTGTGGGTCTACCTCCAGCTTGGGTGGATGTATCCGAAGAAATAGCTGCAAATGTGCAGCGTGCACGAGTGAAGATGGTGGAGTTAGCTAAAGCTCATGCAAAGGCTTTAATGCCTTCATTTGGAGATGGTAAAGAAGATCAACGATTAATTGAGTCTCTCACGCAAGACATAACTAGTTTAATCAAGAAATCAGAGAAGGGACTCAAGAGACTCTCTGTAGCTGGACCTTCGGAAGATTCCAACATCAGAAAAAATGTTCAGGGTTCAACGTGGGATAATGGGCAGGCAGGGAAGCGATCTCTTGCCACTGACCTTCAGAACCTTTCCATGGAGCTTCGCAAGAAACAATCAACTTATTTAAAGCGCCTACAGCAGCAAAAAGAGGTATTTAATGAGCATCAGATGGCTAAGCTGCGAAAGAGTGAAGCATTCACTGCTGAAAGAGAGAGAGAGATCCAACAAGTTGTAGAATCCGTGAATGAGCTTGCTCAGATCATGAAGGATCTATCAGTACTTGTCATAGACCAGGGCACCATTATTGATAGAATAGATTACAATATTCAAAATGTTGCGACGACGGTTGAGGAGGGCCTTAAGCAACTACAGAAGGCAGAGAGAACACAGAAACAAGGGGGGATGGTAATGTGCGCGTCCGTGCTCATTATCATGTGCTTCGTCATGTTGGTTCTCTTGATCCTTAAAACCATATTATTTTGA 942 45.33 MASRNRTLIFRKYRDALRSVRVPTSSSPASASPSTSSGAGGPVIELVSSSLLHQNRSYAPLSTEDPGNSSKGAVTVGLPPAWVDVSEEIAANVQRARVKMVELAKAHAKALMPSFGDGKEDQRLIESLTQDITSLIKKSEKGLKRLSVAGPSEDSNIRKNVQGSTWDNGQAGKRSLATDLQNLSMELRKKQSTYLKRLQQQKEVFNEHQMAKLRKSEAFTAEREREIQQVVESVNELAQIMKDLSVLVIDQGTIIDRIDYNIQNVATTVEEGLKQLQKAERTQKQGGMVMCASVLIIMCFVMLVLLILKTILF 313
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 44108158 44112476 - Maker00003460 Lcy4g1808 631334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy4g1808 313 Pfam SNARE domain 253 305 IPR000727 -
Lcy4g1808 313 SMART tSNARE_6 212 279 IPR000727 -
Lcy4g1808 313 MobiDBLite consensus disorder prediction 21 41 - -
Lcy4g1808 313 SUPERFAMILY t-snare proteins 78 272 IPR010989 GO:0016020(InterPro)|GO:0016192(InterPro)
Lcy4g1808 313 Gene3D - 79 203 - -
Lcy4g1808 313 PANTHER SYNTAXIN 91 297 IPR045242 GO:0000149(PANTHER)|GO:0005484(PANTHER)|GO:0006886(PANTHER)|GO:0006906(PANTHER)|GO:0012505(PANTHER)|GO:0016021(PANTHER)|GO:0031201(PANTHER)|GO:0048278(PANTHER)
Lcy4g1808 313 MobiDBLite consensus disorder prediction 149 168 - -
Lcy4g1808 313 Gene3D - 204 312 - -
Lcy4g1808 313 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 217 279 IPR000727 -
Lcy4g1808 313 CDD SNARE_syntaxin16 221 278 - -
Lcy4g1808 313 ProSitePatterns Syntaxin / epimorphin family signature. 223 262 IPR006012 GO:0005484(InterPro)|GO:0006886(InterPro)|GO:0016020(InterPro)
Lcy4g1808 313 SMART SynN_4 73 199 IPR006011 GO:0016020(InterPro)
Lcy4g1808 313 MobiDBLite consensus disorder prediction 153 168 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy3g1779 Lcy-Chr3:45047568 Lcy4g1808 Lcy-Chr4:44108158 2.97E-114 dispersed
Lcy4g1808 Lcy-Chr4:44108158 Lcy7g1737 Lcy-Chr7:36306148 1.77E-30 dispersed
Lcy4g1808 Lcy-Chr4:44108158 Lcy13g1039 Lcy-Chr13:22711472 5.70E-33 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy4g1808 K08489 - csv:101207998 498.434