Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy4g1812 ATGCTTAAGTCAGAAAGCGGAAAGAGGAGAGCAATAGAGCACGAAGAAAAAGTAGAGAATAAAGTTCCCCATCCCTTCTTCAGTGACGAAGAGGGGTTTTTATACCTGCTCTTGCTCATGGGGTTTTTAGGAATTCGGAGGCGTTTCGGGTCGAACCAGGCGGAACCAGGGCGGCTAGAGGCAGCAGGGACCGAGCGAAGGCTAACGAGTTCGGCCCGACCCTTTGGTCTGTCACCACTCGATTACAGTTTTCGTCGTACGTCCACTTCGTTTCTTCTCCCATTTTCGCTTAAAATCCAAACCCAATTGCCAAACTCCACCAATCCCAGATTCTTTCCTTCTATGGATTCCGATCCATTTCTCTCCTTCTTCACTCCCACCGCCGACCCTGTTCGCCGGAATTCCCTCCGCCGCCCTGTTTTCCGGCGATTCCTCCGGATTCCGGCTCTGATTGAGAAATTTGGAGCTCTGATTGAAGAGTTTTTCCTTTTGAAGTGTCAGCAAAATCCTGTCCTTTACTCAATGAAACCATTCATTTTGACTCTCATGTCTCAGAAGCAACTGTTCCAAGAAGAACCAAAGTTTGGGATCAGTGGGGTTGTGAGAATTGGAATTGCAAAGCTGATGGGGCATTTCTCCACCATGTTCAATGGGCTGGCAAGGTCATTTTCTTTCAAGAAAGGTAGAAATTCTGGGAGTCTAGGCGACGAGGGAGGGCGAGAAGCTGCAAAAGCCATGGTAAAGGATGCAAAAAAGAAAGACTCGATATTGTGCACCTCTGGTGTCCTCAATGCAGAAGGTTCGGATAGTTTTGCTTCGGTTTTCTCGAAAAAAGGCGAAAAAGGTGTGAACCAAGATTGCTGCATTGTATGGGAGGAATTTGGATGCCAAGAAGACATGATATTTTGTGGGATTTTCGACGGGCACGGACCGTGGGGTCATTTTGTTGCAAAGAAAGTAAGAGAATCAATGCCGCCATCTTTGCTGTATCATTGGCAGCAAGGACTTGCTCAAGCTTTTCTTGACCCAGAATTGGATTCAGAAAAGAAGCATCAGCGATTTGATATATGGAAGCATTCCTATTTAAGAACTTGTGCTGCCATCGATCACGAACTCGAGCAGCACCGTAAGATCGATACAGTTTACAGTGGAACAACTGCCCTGTCCATTGTTAAACAGGGTGAACTAGTCGTTTTGGCCAACGTTGGTGACTCTCGAGCGGTTTTGGCTACTACTTCAGATGATGGAAGTGTAGTACCGGTTCAGCTAACCGTTGATTTCAAACCGAACCTACCTCAGGAGGCCGAGCGGATATTGCAGTGCAATGGGAGGGTGTTTTGTTTAAGTGACGAGCCGGGAGTTCACAGAGTCTGGCTTCCCAACGAGGAATCACCCGGATTGGCGATGTCGAGAGCCTTCGGTGATTATTGCATTAAAGAATTTGGACTCATCTCTGTTCCAGAAGTGACATGTAGAAGCATAACCAGCAGAGACCAATTCATTATATTGGCAACTGATGGGGTATGGGATGTTGTCTCCAACCAAGAAGCAGTGGAGATTGTTTCATCAACACCGGAGAAAGCGAAATCAGCAAAACGTCTGGTCGAGTGTGCGGTTCGGGCATGGAAACGGAAGAGACGGGGCATTGCAATGGATGATATATCAGCCATCTGCCTCTTCTTCCACACCTCATCAGAGCAAGAAGATCACCTTGTATCCACACCATAG 1728 47.22 MLKSESGKRRAIEHEEKVENKVPHPFFSDEEGFLYLLLLMGFLGIRRRFGSNQAEPGRLEAAGTERRLTSSARPFGLSPLDYSFRRTSTSFLLPFSLKIQTQLPNSTNPRFFPSMDSDPFLSFFTPTADPVRRNSLRRPVFRRFLRIPALIEKFGALIEEFFLLKCQQNPVLYSMKPFILTLMSQKQLFQEEPKFGISGVVRIGIAKLMGHFSTMFNGLARSFSFKKGRNSGSLGDEGGREAAKAMVKDAKKKDSILCTSGVLNAEGSDSFASVFSKKGEKGVNQDCCIVWEEFGCQEDMIFCGIFDGHGPWGHFVAKKVRESMPPSLLYHWQQGLAQAFLDPELDSEKKHQRFDIWKHSYLRTCAAIDHELEQHRKIDTVYSGTTALSIVKQGELVVLANVGDSRAVLATTSDDGSVVPVQLTVDFKPNLPQEAERILQCNGRVFCLSDEPGVHRVWLPNEESPGLAMSRAFGDYCIKEFGLISVPEVTCRSITSRDQFIILATDGVWDVVSNQEAVEIVSSTPEKAKSAKRLVECAVRAWKRKRRGIAMDDISAICLFFHTSSEQEDHLVSTP 575
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 44155899 44162342 - Maker00003358 Lcy4g1812 631338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy4g1812 575 CDD PP2Cc 271 561 IPR001932 -
Lcy4g1812 575 FunFam Probable protein phosphatase 2C 34 262 563 - -
Lcy4g1812 575 ProSiteProfiles PPM-type phosphatase domain profile. 271 561 IPR001932 -
Lcy4g1812 575 SMART PP2C_4 260 559 IPR001932 -
Lcy4g1812 575 SUPERFAMILY PP2C-like 270 562 IPR036457 -
Lcy4g1812 575 Gene3D - 260 564 IPR036457 -
Lcy4g1812 575 PANTHER PROTEIN PHOSPHATASE 249 560 IPR015655 GO:0004722(PANTHER)|GO:0004722(InterPro)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Lcy4g1812 575 Pfam Protein phosphatase 2C 292 538 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy4g1812 Lcy-Chr4:44155899 Lcy8g1522 Lcy-Chr8:41844103 1.49E-93 dispersed
Lcy12g0768 Lcy-Chr12:9887431 Lcy4g1812 Lcy-Chr4:44155899 1.49E-153 transposed
Lcy2g2311 Lcy-Chr2:48436680 Lcy4g1812 Lcy-Chr4:44155899 3.71E-173 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy4g1812 - - - 0.0