Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy4g1814 ATGTCGACGGAGAGACTGATTCCTACTGGTACAACTCCGTCGGAAGCAGAGCCGCCGAGGTTGGCTTCAGCGTCGCATTCGTTCCGGCAAGGTGGAGAACAGGCTAGGGTTTTTGATGAGCTTCCGATTGCTTCCATTGTATCGGTTTCGCGGCCGGATACTGGAGATATTAGTCCCTTGCTGTTATCTTACACCATTGAAATCCAATACAAACAGTTTAAATGGAGCTTAGTGAAGAAAGCATCGCAAGTTCTTTATTTACATTTTGCATTGAAGAGACGCGCATTTATCGAAGAACTTCATGAGAAACAAGAGCAGGTGAAAGAATGGCTTCACAACTTGGGAATAGTAGACCATACAGCAGTAGTTCATCATGATGACGAGTCTGATGATGGGGCTTTTCCTTTGCATGATGAACAAACTACAAGAAACAGAACTGAGAAGAAGGGAGTTATTGATGCTTTGGATGATTTATCTTCTTCTAAAATGTATAGGAATGTTCCGTCTGTTGCTGCTTTACCCATCATTAAGCCAGCACTGGGAGGACAGCGGTCCATTTCAGACAAGGCAAAGTTAGTAATGCAAGTAAATCTTGAAAAGCAGGTCTGCAAATTTTTAGAAGTCTCCAAGATGTCATTTGTAAGAGAATACGGTCCAAAGTTGAAAGAAGGTTACCTAATGGTGAAGCATTTAAAACAACTCACAGGATCTGATTCTAGTATAAAATGTTTTGCATGTCATTGGTGCAGTTGCTGCGATTACAATTGGAAAAAGGTTTGGGCTGTTTTGAAACCAGGTTTCTTGGCCTTGGTTGCTGATCCTATGGACACTAGACTCCTAGATATAATTGTTTTTGATGTGCTACCAACATTAGAAGAAAAGGAGGGATCCCAAGCATGCTTAGCATATCATGTCAAGGAGCGCAATCCTTTACGTTATTCGTTTAAGGTTAGATGCGGAAATGGGAACACGAAGTTCAGATCTACAAGTACTGCCAAAGTCAAAGAATGGGTCTCATCAATTAATGATGCTGGTTTTGGACCCCAAGATGACTGGTGCCACCCTCATCGCTTTGGTTCTTTTGCTCCTAAGAGAGGTTTGAATGATGATGAAAGCCAAGCTCAGTGGTTCATAGATGGCCGGGCAGCTTTTGAAGCAATCGCTTGCTCTATTGAGGCTGCAAAATCAGAGATTTTCATCACTGGTTGGTGGCTTTGCCCTGAGCTTTATATGCGACGTCCTTTTCACAATCATTCTTCTTCACGGCTTGATGCATTACTGGAAACAAAGGCAAAAGAAGGAGTCAAGATTTACATCTTAATGTATAAGGAGGTTCCTATTGCTCTGAAAATTAACAGTATGTATAGTAAGAAGAGGCTTCTAAATATTCATGAGAATATTAAGGTTCTACGTTCTCCTGATCATATGTCAAGTGGGATTTACTATTGGTCACATCACGAAAAACTTGTCATCGTTGATTTCCACATTTGCTTCATTGGAGGTTTGGATTTATGCTTTGGCCGCTATGATACAATGGAACATAAAGTGAGTGATTTCCCTCCTTATACATGGCCAGGGAAGGACTATTACAACCCAAGAGAATCTGAACCAAATTCTTGGGAAGACACAATGAAAGATGAATTGGAGCGGGAGAAGTGTCCTCGAATGCCGTGGCATGATGTTCACTGTGCTCTTTGGGGATCTCCATGCCGTGATATTGCTCGACACTTTGTTCAGAGGTGGAACCATGCTAAGAGAAACAAAGCCCCAAATGAAGAAAAAATACCTCTACTTTTGCCTCAACATGACATGGTCCTTCCACATTACATGGGAAAAAGCACGGAGTTGAGCTTCGAAAATAAAGACACAGAGCAAGATCATCAGAAGCAGATTACAGAAGATTTCTTTTCCTCCATATCACCACAGGAAGATATTCCATTACTTATGCCTCAGGAAGTTGGTGGACTTCCAGATTCTAATATGGAAACAAATAGCCTTTCCATGAATGACAATTTTCTCAATAAGCCCATGGAGATACAAAGAAGTGTTGTGGATTCTTTCCAGGCCTACGATGTTGAACCATTGACCCAATATGAACAAACAAATGGATTGTTAGATGAATTTGGATTTTTGGATGAGTTTGGTGCTTTTGGTCATCCAAGGGAAGATCCTATTGATACTCCGGCATATGTGAAAACTTCAGATGATTGGTTGGAAACTGAACATGAAAGCAATCATGTTAGTATAAATGAGGTCAAAGAAATTGGTCCTCTTACTACTGGCAATTGTCAGGTAATAAGAAGTGTCAGCCAGTGGTCAGCAGGAACGAGCAAACCCGAAGCAAGTATCCATGCTGCTTATTGTTCTGCCATTCAAGAGGCGAAACACTTCATATACATTGAGAACCAGTTTTTTATATCAGGTTTATCGGGGGATGAGACCATACAAAATCGGGTTCTGGAAGCACTATACCAACGTATATTGCTGGCTCATAAAGAACAACAATGTTTTAGAGTTATTGTTGTTCTACCACTCCTACCTGGATTTCAGGGTGGTGTAGATGACAATGGTGCAGCAACGGTCCGAGCCTTGATGCATTGGCAGTATCGAACAATTAGTTGGGAAAAGACTTCGATATTGTACCGCCTCAATCTTTTACTGGGTCCTAAAACAGAAGATTATATTTTGTTTTGTGGCCTTCGATCATATGGCAGACTTTTTGATGGTGGTCCAATTGCCACAAGTCAGGTATATGTGCACAGCAAATTGATGATAATCGATGATTGCATTACCTTTATTGGTTCCTCCAATATTAACGATCGAAGTTTACTTGGATCCAGAGATTCTGAGATTGGGGTAATTATTGAGGACAAAGAGTTTGATGATTCATCTATGAATGGGAAGCCATGGAAGGCTGGAAAATTCGCTCATAGTCTACGATGCTCCTTGTGGTGTGAGCACCTCGGTCTTCATCTCGGAGAGGTCAATCAAATCATTGATCCGATAGTAGAAGCAACATACAAAGATTTATGGTTAGCTACGGCAAAGGAAAACACAACAATATATGAAGATGTCTTTTCTTGCATCCCCAATGACAACATAAACTCGAGATCGTCTTTACGCCAAAGTCTGGCGGATTTGAAGGGAAAACTTGGTCATAACACAATAGATTTAGGAATAGCTGCTGAGAAGATAGAAAGCCGATCTGGATTCAATGGGGAAGTAAAAATGATAGATCCAATGGAGAGACTGAAGTGTATTAGAGGACATCTTGTCTGTTTCCCATTGAAGTTCATGTGGCAAGAAGATCTCAGACCAGGGTTCATTGAGAGTGAGTTTTATGCTGCCCCTCAAGTTTTTCATTAA 3366 41.06 MSTERLIPTGTTPSEAEPPRLASASHSFRQGGEQARVFDELPIASIVSVSRPDTGDISPLLLSYTIEIQYKQFKWSLVKKASQVLYLHFALKRRAFIEELHEKQEQVKEWLHNLGIVDHTAVVHHDDESDDGAFPLHDEQTTRNRTEKKGVIDALDDLSSSKMYRNVPSVAALPIIKPALGGQRSISDKAKLVMQVNLEKQVCKFLEVSKMSFVREYGPKLKEGYLMVKHLKQLTGSDSSIKCFACHWCSCCDYNWKKVWAVLKPGFLALVADPMDTRLLDIIVFDVLPTLEEKEGSQACLAYHVKERNPLRYSFKVRCGNGNTKFRSTSTAKVKEWVSSINDAGFGPQDDWCHPHRFGSFAPKRGLNDDESQAQWFIDGRAAFEAIACSIEAAKSEIFITGWWLCPELYMRRPFHNHSSSRLDALLETKAKEGVKIYILMYKEVPIALKINSMYSKKRLLNIHENIKVLRSPDHMSSGIYYWSHHEKLVIVDFHICFIGGLDLCFGRYDTMEHKVSDFPPYTWPGKDYYNPRESEPNSWEDTMKDELEREKCPRMPWHDVHCALWGSPCRDIARHFVQRWNHAKRNKAPNEEKIPLLLPQHDMVLPHYMGKSTELSFENKDTEQDHQKQITEDFFSSISPQEDIPLLMPQEVGGLPDSNMETNSLSMNDNFLNKPMEIQRSVVDSFQAYDVEPLTQYEQTNGLLDEFGFLDEFGAFGHPREDPIDTPAYVKTSDDWLETEHESNHVSINEVKEIGPLTTGNCQVIRSVSQWSAGTSKPEASIHAAYCSAIQEAKHFIYIENQFFISGLSGDETIQNRVLEALYQRILLAHKEQQCFRVIVVLPLLPGFQGGVDDNGAATVRALMHWQYRTISWEKTSILYRLNLLLGPKTEDYILFCGLRSYGRLFDGGPIATSQVYVHSKLMIIDDCITFIGSSNINDRSLLGSRDSEIGVIIEDKEFDDSSMNGKPWKAGKFAHSLRCSLWCEHLGLHLGEVNQIIDPIVEATYKDLWLATAKENTTIYEDVFSCIPNDNINSRSSLRQSLADLKGKLGHNTIDLGIAAEKIESRSGFNGEVKMIDPMERLKCIRGHLVCFPLKFMWQEDLRPGFIESEFYAAPQVFH 1121
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 44177311 44186808 - Maker00003286 Lcy4g1814 631340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy4g1814 1121 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 915 942 IPR001736 GO:0003824(InterPro)
Lcy4g1814 1121 MobiDBLite consensus disorder prediction 1 26 - -
Lcy4g1814 1121 PIRSF PLD_euk 45 635 IPR016555 GO:0004630(InterPro)|GO:0006654(InterPro)|GO:0035556(InterPro)
Lcy4g1814 1121 PIRSF PLD_euk 723 1121 IPR016555 GO:0004630(InterPro)|GO:0006654(InterPro)|GO:0035556(InterPro)
Lcy4g1814 1121 Gene3D Endonuclease Chain A 367 622 - -
Lcy4g1814 1121 FunFam Phospholipase 749 969 - -
Lcy4g1814 1121 SUPERFAMILY Phospholipase D/nuclease 347 600 - -
Lcy4g1814 1121 CDD PH_PLD 202 344 - -
Lcy4g1814 1121 Pfam Phospholipase D Active site motif 483 508 IPR001736 GO:0003824(InterPro)
Lcy4g1814 1121 PANTHER PHOSPHOLIPASE D 168 1099 IPR015679 GO:0004630(PANTHER)|GO:0005886(PANTHER)|GO:0009395(PANTHER)
Lcy4g1814 1121 Pfam PLD-like domain 917 960 IPR025202 -
Lcy4g1814 1121 SMART pld_4 915 942 IPR001736 GO:0003824(InterPro)
Lcy4g1814 1121 SMART pld_4 481 508 IPR001736 GO:0003824(InterPro)
Lcy4g1814 1121 CDD PLDc_vPLD1_2_yPLD_like_2 775 959 - -
Lcy4g1814 1121 Gene3D Endonuclease Chain A 731 974 - -
Lcy4g1814 1121 ProSiteProfiles PH domain profile. 219 346 IPR001849 -
Lcy4g1814 1121 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 481 508 IPR001736 GO:0003824(InterPro)
Lcy4g1814 1121 Gene3D - 215 345 IPR011993 -
Lcy4g1814 1121 SUPERFAMILY Phospholipase D/nuclease 756 958 - -
Lcy4g1814 1121 SUPERFAMILY PH domain-like 221 344 - -
Lcy4g1814 1121 CDD PLDc_vPLD1_2_yPLD_like_1 374 518 - -
Lcy4g1814 1121 SMART PH_update 220 348 IPR001849 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g0767 Lcy-Chr12:9870741 Lcy4g1814 Lcy-Chr4:44177311 0 dispersed
Lcy4g1814 Lcy-Chr4:44177311 Lcy6g1997 Lcy-Chr6:42548569 2.35E-32 dispersed
Lcy4g1814 Lcy-Chr4:44177311 Lcy1g0587 Lcy-Chr1:4994397 7.26E-32 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy4g1814 K01115 - csv:101220522 2036.54