Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy4g1870 ATGCAAGATATCTTCGCTTCTGTTCGCCGATCATTGGTGTTTCGCGCTCCCGTTGAGAATGAGGATTCGCATTCCCCTGCAATTGGAGTTGGAGCCCTAGTTGATAGGCTTAACTCCAGCATTCGCAAATCGAGAGTGTTTTCTAGGCACTCGCCGTCCTCCTCGGCTCTGCCTCCGATTCCCAAGGAAAGCGAGCCTCCGATTCGATGGCGCAAGGGCGAGTTGATTGGCTGCGGCGCCTTTGGCCGGGTGTATATGGGCATGAATCTTGGCTCTGGCGAGCTTCTCGCTGTCAAACAGGTTCTGATTGCTGCGAATGGCGCTTCGAAGGAGAAAGCGCAGGCTCATGTTAAGGAGCTTGAGGAAGAAGTGAAACTTCTCAAGGATCTTTCTCATCCAAATATTGTTAGATATTTGGGCACGGTTAGGGAGGATGATTCTTTAAATATATTATTGGAATTTGTCCCTGGTGGATCGATATCATCACTTTTGGGGAAATTTGGAGCCTTCCCTGAAGCAGTTATAAGAACATATACAAAACAGTTATTATTGGGATTGGAATATTTGCACAAGAACGGTATCATGCACAGGGACATTAAGGGGGCAAATATTCTTGTGGATAACAAGGGATGCATCAAGCTTGCTGATTTTGGTGCATCAAAACAGGTTGTCGAGCTGGCTACAATTTCAGGTGCAAAATCTATGAAGGGTACTCCATATTGGATGGCTCCTGAAGTAATTCTGCAGACTGGGCATAGTTTCTCTGCTGATATATGGAGTGTTGGATGCACTGTTATTGAGATGGCTACAGGAAAGCCTCCTTGGAGCCAACAGTATCAAGAGGTTGCTGCTCTCTTTCATATAGGCACAACAAAGTCTCATCCACCAATCCCTGAGCAGCTTTCGGTTGAAGCTAAAGATTTTCTGTTGAAATGTTTGCAGAAGGAACCAAACTTAAGACTAGCTGCATCTGAACTCTTAAAGCATCCTTTTGTTACTGGGGAGGAAATAGAATCTCAACTTGTATCACATGATGCATGCACGGAGCCCTTGGAAATCCATTCACCTTTATATACTTCCAACCTTGAAATGAGTAAAACTCCAACACATCCTGGATCAAGTGATATTTGTAATTTGGATAGTCTGAACTGCTCAAAAGTATACACTGCAAACAAACTAGAAAATGATATTTGGGGAACAAACAACAGTGATGATGAAATGTGTCAGATTGATGACAAGGATGATTTTATGTTAGATGAAGTAAAACTCAGGTCTTCTATTATACCTGATAATTTCAAGAGTTATAACCCAATATGTGAGCCCTCCGATGATGAGGATTGCAACTTTGATAAAAGTCCAGTATTAGACCAAGGAAGCAATTTAGATGAGCAAGCTCTTGCACCTGGCAGCTGTTCTGGAGCTTTTGATGATGACCAAAACTTCTCATTTCCTAGTGGGCGATCACTTTCTGAAGATGAGGATGAGCTCACTGAATCAAAAATTAAAGCTTTCTTGGATGAAAAGGCTCTTGAATTGAAGAAACTGCAGTCACCGTTATATGAGGAGTTCTACAATAGTTTGAATACATCCTGCTCTCCAGTTTTTATCGAGAGTAAACAAGATGAAAGTACTCCTAAATACCTGAAATTGCCCCCAAAAAGTCGGTCACCAAGTCGAAGTCCTGGCAATCCATCCCCAGCACTTGATGCTTTTGGCACTGGGAGCCCAGGGAGTGGTAGCAGGGGTAATGCAGATCAGAGGTCACAACTTAACGATTGGAAAGGACTTCTAGGTGATGGTCAGTCAGAAGCTGGTAGCCCAAGTAAGCATTATTCTGAAATCCAGAGGAAGTGGAAAGAAGAGCTTGATCAGGAGCTTGAGAGAAAACGAGAGATGATGCGTCAAGCTAGCATGGGAGGCAAAACTTCATCTCCAAAGGACAAGGGCAGGCAGAGAGAGCGGACAAGATTTGCATCTCCATTCCGGGATGATGCGTCGGGCACTGGGAGGGAGAACAGGGAAAACTTCATCTCCTGA 2037 44.04 MQDIFASVRRSLVFRAPVENEDSHSPAIGVGALVDRLNSSIRKSRVFSRHSPSSSALPPIPKESEPPIRWRKGELIGCGAFGRVYMGMNLGSGELLAVKQVLIAANGASKEKAQAHVKELEEEVKLLKDLSHPNIVRYLGTVREDDSLNILLEFVPGGSISSLLGKFGAFPEAVIRTYTKQLLLGLEYLHKNGIMHRDIKGANILVDNKGCIKLADFGASKQVVELATISGAKSMKGTPYWMAPEVILQTGHSFSADIWSVGCTVIEMATGKPPWSQQYQEVAALFHIGTTKSHPPIPEQLSVEAKDFLLKCLQKEPNLRLAASELLKHPFVTGEEIESQLVSHDACTEPLEIHSPLYTSNLEMSKTPTHPGSSDICNLDSLNCSKVYTANKLENDIWGTNNSDDEMCQIDDKDDFMLDEVKLRSSIIPDNFKSYNPICEPSDDEDCNFDKSPVLDQGSNLDEQALAPGSCSGAFDDDQNFSFPSGRSLSEDEDELTESKIKAFLDEKALELKKLQSPLYEEFYNSLNTSCSPVFIESKQDESTPKYLKLPPKSRSPSRSPGNPSPALDAFGTGSPGSGSRGNADQRSQLNDWKGLLGDGQSEAGSPSKHYSEIQRKWKEELDQELERKREMMRQASMGGKTSSPKDKGRQRERTRFASPFRDDASGTGRENRENFIS 678
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 44901404 44906962 - Maker00003386 Lcy4g1870 631396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy4g1870 678 MobiDBLite consensus disorder prediction 645 678 - -
Lcy4g1870 678 Coils Coil 615 639 - -
Lcy4g1870 678 FunFam Serine/threonine-protein kinase STE11 67 160 - -
Lcy4g1870 678 MobiDBLite consensus disorder prediction 610 635 - -
Lcy4g1870 678 MobiDBLite consensus disorder prediction 576 590 - -
Lcy4g1870 678 ProSitePatterns Protein kinases ATP-binding region signature. 76 99 IPR017441 GO:0005524(InterPro)
Lcy4g1870 678 MobiDBLite consensus disorder prediction 541 678 - -
Lcy4g1870 678 SMART serkin_6 70 332 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy4g1870 678 Coils Coil 103 130 - -
Lcy4g1870 678 MobiDBLite consensus disorder prediction 45 65 - -
Lcy4g1870 678 Gene3D Transferase(Phosphotransferase) domain 1 69 359 - -
Lcy4g1870 678 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 41 334 IPR050538 -
Lcy4g1870 678 Pfam Protein kinase domain 71 332 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy4g1870 678 FunFam Mitogen-activated protein kinase kinase kinase 2 69 361 - -
Lcy4g1870 678 ProSiteProfiles Protein kinase domain profile. 70 332 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy4g1870 678 SUPERFAMILY Protein kinase-like (PK-like) 69 372 IPR011009 -
Lcy4g1870 678 ProSitePatterns Serine/Threonine protein kinases active-site signature. 194 206 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy4g1870 678 CDD STKc_MAPKKK 69 332 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g1626 Lcy-Chr1:16608023 Lcy4g1870 Lcy-Chr4:44901404 1.08E-06 dispersed
Lcy4g1870 Lcy-Chr4:44901404 Lcy6g0152 Lcy-Chr6:1424354 1.36E-49 dispersed
Lcy4g1870 Lcy-Chr4:44901404 Lcy13g0258 Lcy-Chr13:2705695 4.25E-251 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65871 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy4g1870 K20606 - csv:101209358 1177.93