Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy4g1887 ATGGCCGCCGCCCATGCCCTCCCCTTCTTCTTCCTCCTCTTCCTCTCCGCCTCCGCCCAGTCCCAGTTCCCCCCGGACCCCAGATCCGACCCCTACCAGTACCGCCTCAGCGGCTCCATGGCCGTCATCATCGTTATCCTCATCGCCGCCCTCTTCTTCATGGCCTTCTTCTCCGTCTACATCCGCCACTGCAACGACTCCCAGTCCAACACCGTCCGCCCTCTCTCCACCGCCGCCGCCCGCTCCCGCCGCGCCAACCGCGGCCTCGATCCCTCCATAATCGAAACCTTCCCCACTCTCATCTACTCCGATGTCAAAGAGCACAAGATCGGTAAGAGTGCCCTAGAATGCGCCGTTTGCTTGAACGAATTCGAAGACGACGAAACGCTGCGTTTGATCCCTAAATGTGACCACGTTTTCCACCCTGAGTGTATCGACGCTTGGTTGGCTGCTCACTCCACTTGCCCTGTTTGTCGCGCTAATTTGAATCCCCAACTCACTGAGTCCGTTCACCGAGTTGATAACGACTCCAACTCCGAGTCTGACCCCGAGTTGGGCCGAGTTCGAGACGCTGAACCTCAGTCCAACGACGTCGTTTTGGAGTCCAATCCTCCACCGCCGATGACTCCACCGCCGGCTGTTCAGATTCCGGCCGAGTCCGATAACAAGGCCTTGAATCGGACCCGTACACGTGGATCCCGATCGAACAGGCTGCGGTGGCTATTCCCCCGCTCTCACTCGACTGGCCACTCGCTGGTTCAGCCCGGGGAGGACACCGAGCGGTTTACTCTCCGGTTGCCGGTTGAGATAAGGAAGCAGGTGGTGAACCGGAAGCTGAACCGGGCGACGAGTATGGTGGTTCTGGCACGGCAGAGCAGCTCGATGAGGGGATACCGGTTCGGTTCGGGCGAAGGGAGTAGTCGAGGGAAGTATTACCGGAGGCTCGAGCGGTTGGACCGGACGTCGAAATCAGACCGGTGGATGTTGTCAATTACGCCGCCGTTTTTCACGCGGATGTCGTCGATGAAGACTCCCCGAGGAGGGAGTAACCATGGAGAAGGATCCGGTTCAGGACGAGAACCTGGGTTGGGACCGGGTAATTCCACGGCCGATTCAAGTGGGCTACCGGTTTGA 1134 59.35 MAAAHALPFFFLLFLSASAQSQFPPDPRSDPYQYRLSGSMAVIIVILIAALFFMAFFSVYIRHCNDSQSNTVRPLSTAAARSRRANRGLDPSIIETFPTLIYSDVKEHKIGKSALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLAAHSTCPVCRANLNPQLTESVHRVDNDSNSESDPELGRVRDAEPQSNDVVLESNPPPPMTPPPAVQIPAESDNKALNRTRTRGSRSNRLRWLFPRSHSTGHSLVQPGEDTERFTLRLPVEIRKQVVNRKLNRATSMVVLARQSSSMRGYRFGSGEGSSRGKYYRRLERLDRTSKSDRWMLSITPPFFTRMSSMKTPRGGSNHGEGSGSGREPGLGPGNSTADSSGLPV 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 45019315 45020448 - Maker00003571 Lcy4g1887 631413

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy4g1887 377 FunFam E3 ubiquitin-protein ligase ATL6 77 165 - -
Lcy4g1887 377 SUPERFAMILY RING/U-box 116 165 - -
Lcy4g1887 377 SMART ring_2 117 158 IPR001841 -
Lcy4g1887 377 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 25 266 - -
Lcy4g1887 377 MobiDBLite consensus disorder prediction 338 377 - -
Lcy4g1887 377 MobiDBLite consensus disorder prediction 173 191 - -
Lcy4g1887 377 CDD RING-H2_EL5-like 116 159 - -
Lcy4g1887 377 ProSiteProfiles Zinc finger RING-type profile. 117 159 IPR001841 -
Lcy4g1887 377 MobiDBLite consensus disorder prediction 169 237 - -
Lcy4g1887 377 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 76 165 IPR013083 -
Lcy4g1887 377 Pfam Ring finger domain 116 159 IPR001841 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy4g1887 K10664 - - csv:101212548 567.385
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g0185 Lcy-Chr11:2106368 Lcy4g1887 Lcy-Chr4:45019315 2.04E-14 dispersed
Lcy12g1956 Lcy-Chr12:40925331 Lcy4g1887 Lcy-Chr4:45019315 4.93E-29 dispersed
Lcy1g0817 Lcy-Chr1:6952748 Lcy4g1887 Lcy-Chr4:45019315 8.58E-38 dispersed
Lcy4g1887 Lcy-Chr4:45019315 Lcy9g1702 Lcy-Chr9:42247618 7.52E-60 dispersed
Lcy4g1887 Lcy-Chr4:45019315 Lcy13g1532 Lcy-Chr13:34106007 4.83E-72 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy12g0752 . 19 185 Rapid Response to Elicitors AT3G16720 50.8 3.4e-38 156.4
Lcy12g0752 . 19 185 Rapid Response to Elicitors AT3G16720 50.8 3.4e-38 156.4
Lcy4g1887 . 1 338 Rapid Response to Elicitors AT3G05200 50.1 4.5e-75 279.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007000 1 1 2 3 2 1 1 1 1 1 1 1 1 1 0 1 1 2 1 1 1 1 1 2 1 1 1 2 1 1 36