Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy4g1887 ATGGCCGCCGCCCATGCCCTCCCCTTCTTCTTCCTCCTCTTCCTCTCCGCCTCCGCCCAGTCCCAGTTCCCCCCGGACCCCAGATCCGACCCCTACCAGTACCGCCTCAGCGGCTCCATGGCCGTCATCATCGTTATCCTCATCGCCGCCCTCTTCTTCATGGCCTTCTTCTCCGTCTACATCCGCCACTGCAACGACTCCCAGTCCAACACCGTCCGCCCTCTCTCCACCGCCGCCGCCCGCTCCCGCCGCGCCAACCGCGGCCTCGATCCCTCCATAATCGAAACCTTCCCCACTCTCATCTACTCCGATGTCAAAGAGCACAAGATCGGTAAGAGTGCCCTAGAATGCGCCGTTTGCTTGAACGAATTCGAAGACGACGAAACGCTGCGTTTGATCCCTAAATGTGACCACGTTTTCCACCCTGAGTGTATCGACGCTTGGTTGGCTGCTCACTCCACTTGCCCTGTTTGTCGCGCTAATTTGAATCCCCAACTCACTGAGTCCGTTCACCGAGTTGATAACGACTCCAACTCCGAGTCTGACCCCGAGTTGGGCCGAGTTCGAGACGCTGAACCTCAGTCCAACGACGTCGTTTTGGAGTCCAATCCTCCACCGCCGATGACTCCACCGCCGGCTGTTCAGATTCCGGCCGAGTCCGATAACAAGGCCTTGAATCGGACCCGTACACGTGGATCCCGATCGAACAGGCTGCGGTGGCTATTCCCCCGCTCTCACTCGACTGGCCACTCGCTGGTTCAGCCCGGGGAGGACACCGAGCGGTTTACTCTCCGGTTGCCGGTTGAGATAAGGAAGCAGGTGGTGAACCGGAAGCTGAACCGGGCGACGAGTATGGTGGTTCTGGCACGGCAGAGCAGCTCGATGAGGGGATACCGGTTCGGTTCGGGCGAAGGGAGTAGTCGAGGGAAGTATTACCGGAGGCTCGAGCGGTTGGACCGGACGTCGAAATCAGACCGGTGGATGTTGTCAATTACGCCGCCGTTTTTCACGCGGATGTCGTCGATGAAGACTCCCCGAGGAGGGAGTAACCATGGAGAAGGATCCGGTTCAGGACGAGAACCTGGGTTGGGACCGGGTAATTCCACGGCCGATTCAAGTGGGCTACCGGTTTGA 1134 59.35 MAAAHALPFFFLLFLSASAQSQFPPDPRSDPYQYRLSGSMAVIIVILIAALFFMAFFSVYIRHCNDSQSNTVRPLSTAAARSRRANRGLDPSIIETFPTLIYSDVKEHKIGKSALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLAAHSTCPVCRANLNPQLTESVHRVDNDSNSESDPELGRVRDAEPQSNDVVLESNPPPPMTPPPAVQIPAESDNKALNRTRTRGSRSNRLRWLFPRSHSTGHSLVQPGEDTERFTLRLPVEIRKQVVNRKLNRATSMVVLARQSSSMRGYRFGSGEGSSRGKYYRRLERLDRTSKSDRWMLSITPPFFTRMSSMKTPRGGSNHGEGSGSGREPGLGPGNSTADSSGLPV 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 45019315 45020448 - Maker00003571 Lcy4g1887 631413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy4g1887 377 FunFam E3 ubiquitin-protein ligase ATL6 77 165 - -
Lcy4g1887 377 SUPERFAMILY RING/U-box 116 165 - -
Lcy4g1887 377 SMART ring_2 117 158 IPR001841 -
Lcy4g1887 377 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 25 266 - -
Lcy4g1887 377 MobiDBLite consensus disorder prediction 338 377 - -
Lcy4g1887 377 MobiDBLite consensus disorder prediction 173 191 - -
Lcy4g1887 377 CDD RING-H2_EL5-like 116 159 - -
Lcy4g1887 377 ProSiteProfiles Zinc finger RING-type profile. 117 159 IPR001841 -
Lcy4g1887 377 MobiDBLite consensus disorder prediction 169 237 - -
Lcy4g1887 377 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 76 165 IPR013083 -
Lcy4g1887 377 Pfam Ring finger domain 116 159 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g0185 Lcy-Chr11:2106368 Lcy4g1887 Lcy-Chr4:45019315 2.04E-14 dispersed
Lcy12g1956 Lcy-Chr12:40925331 Lcy4g1887 Lcy-Chr4:45019315 4.93E-29 dispersed
Lcy1g0817 Lcy-Chr1:6952748 Lcy4g1887 Lcy-Chr4:45019315 8.58E-38 dispersed
Lcy4g1887 Lcy-Chr4:45019315 Lcy9g1702 Lcy-Chr9:42247618 7.52E-60 dispersed
Lcy4g1887 Lcy-Chr4:45019315 Lcy13g1532 Lcy-Chr13:34106007 4.83E-72 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy4g1887 K10664 - csv:101212548 567.385