Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lcy4g1889 | ATGGCTTTAGAGGCTGTTGTTTTTCCTCAAGATCCATTGAGTTACAATGGCAGCAAAGATCTTTACAGCTTGTTTGGAGGAGGGATTTGGACAAATGGAAGCTTTGAATATCCTCAAATCCCTCATGATTTTCCCGAGAACCAAACAGAAAATTTCCCATTTAGCGATTGGAACTCCTCCTCCTCTGTTTTGATCCCTAATCCTTCCCCTGAAGCTGCCATTTCCAGAAATGGGTTGATCTTCAACGACCCAAATCCGCCATTGGAGGCCGAATCAAGAACTCCAAATCCAATCCGGCCGAGAAAACGAAGACCCAAATCCCGCAAGAACAAGGAGGAAATCGAAAATCAGAGAATGACTCACATCGCTGTCGAACGAAATCGAAGAAAACAGATGAATGAGTATCTCTCTGTTCTTCGATCTTTAATGCCAGATTCTTATGTTCAAAGGGGAGATCAAGCTTCAATCATTGGGGGAGCAATCAATTTTGTGAAGGAGCTTGAACAGCAAGTTCAATTTCTCTCAACAGCTCAAATGGAATCAAAAGGGAACAACAATAATCATAATAATTCTTCAGAAGGCTGTTCTTCTTCTTCCTCTTCTTCTTCTTCTTCTTCTTCTTCAGAAATCCCTTTCTCTGAGTTCTTCAGCTTCCCTCAGTTCAAAGCAATGGAGGGTTGTTCTGTAAGTGAGAATGAAACTCAGAGCTCCTCCATTGCTGACATTGAAGTAACAATGGTGGAAAATCATGCAAATTTGAAAATCAGGTCAAAGAAAAGGCCCAAACAAGTCTTGAAAATTGTTGCTGGCTTGCATTCCCTTTCCCTCTCTGTTCTTCATCTCAATATCTCAACCATCAACCAGATTGTTCTTTACTGTCTCAGTGTCAAGGTTGAAGATGATTGCAAGCTGACTTCTGTTGATGAAATTGCTTCTGCTCTGCATCAGTTACTCAGTAGAATAGAAGAAGATTCACTTATGAACTGA | 987 | 40.93 | MALEAVVFPQDPLSYNGSKDLYSLFGGGIWTNGSFEYPQIPHDFPENQTENFPFSDWNSSSSVLIPNPSPEAAISRNGLIFNDPNPPLEAESRTPNPIRPRKRRPKSRKNKEEIENQRMTHIAVERNRRKQMNEYLSVLRSLMPDSYVQRGDQASIIGGAINFVKELEQQVQFLSTAQMESKGNNNNHNNSSEGCSSSSSSSSSSSSSEIPFSEFFSFPQFKAMEGCSVSENETQSSSIADIEVTMVENHANLKIRSKKRPKQVLKIVAGLHSLSLSVLHLNISTINQIVLYCLSVKVEDDCKLTSVDEIASALHQLLSRIEEDSLMN | 328 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 45066112 | 45067672 | + | Maker00003450 | Lcy4g1889 | 631415 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lcy4g1889 | 328 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 116 | 167 | IPR011598 | GO:0046983(InterPro) | |
| Lcy4g1889 | 328 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 116 | 177 | IPR036638 | GO:0046983(InterPro) | |
| Lcy4g1889 | 328 | SMART | finulus | 122 | 173 | IPR011598 | GO:0046983(InterPro) | |
| Lcy4g1889 | 328 | MobiDBLite | consensus disorder prediction | 82 | 119 | - | - | |
| Lcy4g1889 | 328 | Gene3D | - | 107 | 197 | IPR036638 | GO:0046983(InterPro) | |
| Lcy4g1889 | 328 | Pfam | Helix-loop-helix DNA-binding domain | 117 | 168 | IPR011598 | GO:0046983(InterPro) | |
| Lcy4g1889 | 328 | PANTHER | MAX DIMERIZATION, MAD | 1 | 320 | - | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER) | |
| Lcy4g1889 | 328 | MobiDBLite | consensus disorder prediction | 180 | 203 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lcy13g1533 | Lcy-Chr13:34142235 | Lcy4g1889 | Lcy-Chr4:45066112 | 1.12E-71 | dispersed | |
| Lcy2g2000 | Lcy-Chr2:37504333 | Lcy4g1889 | Lcy-Chr4:45066112 | 5.64E-79 | dispersed | |
| Lcy4g1889 | Lcy-Chr4:45066112 | Lcy6g1062 | Lcy-Chr6:11624684 | 3.54E-57 | dispersed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 20007 | None | None | None | None | Lcy | TF |
Pathway information