Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy4g1925 | ATGGACGATGAAACCTCAAAGAAGGAGGAAGAGAGCTCTCGGAATGAGGAAGGATCGAAGCCGCCAAATGATTCCTCAAAGAGGACAATTGATTTAACTGGAGAGACAAGGAGTAGAGAGGTCTATTCCCCAAGCACTTATCCTTCCAAAAGTAAGTATCCCTCCCATCTCCCACAACACATTGAACAAACTAGAAAAGAAAAGGAAGCTAAACCCGAATACCTTTCCTTGAGGGGAAGTGGAAACGCTGTCCAGATTGTTCAGAGGCACCACTTTGCTTCACATTTGAAGAGAATGGCAGTTGTTGTGCGCCTTCAAGAGGAATTTTTTGCATTTGTGAAGGGTGCCCCCGAAACCATCCAGGAGAGGCTCACTGATATACCTTCATTTTATGTTGAGACGTATAAGAAATTTACACGACAAGGTTCCCGTGTCCTTGCTCTTGCTTACAAATCACTTCCAGACATGACAGTTAGTGAAGCTAGAGGCCTGGATAGGGACTTGGTGGAGAGTGACCTTACATTTGCTGGTTTTGCGGTGTTTAATTGTCCAATTAGAGCAGATTCGGCTACAATATTATCTGAGCTTAAAGGATCATCGCATGACCTGGTATTCTCTATTCAGCCTAATTATTGCCCCTTCATTGTGACTAATAGAAAATACTTATTGGAGGCTGCTGTCTACTCGGTCATGATTACTGGTGACCAAGCTTTGACAGCATGCCACGTAGCTAGCCAAGTTCACATTACCTCGAAGCAGATTTTAATTCTCAATTCAAAGAAGGGAACTGAGGAATATGAATGGCTCTCCCCAGATGAGTTACAGACAGTTCCATACAGAGAAAAAGAGGTGGGAAATTTATCGGAGACATATGATCTATGTATTGGAGGTGACTGCATTGGAATGCTACAACGCACCTCCACCGTGCTGGATGTTATTCCATACATTAAGGTTTTTGCAAGAGTTGCTCCAGAGCAGAAAGAACTCATATTGACCACATTCAAAACAGTTGGAAGAATGACGTTGATGTGTGGGGATGGAACAAACGATGTTGGAGCTTTGAAGCAGGCCCATGTTGGAATTGCCCTCCTAAACGCAGTCCCTCCTCCTCAAAGTGGTAATTCTTCCTCAGAGGCATCTAAAGATGAGGCAGTGCGGTCTGCAAAGTCAAAGAAATCTAAGCCCTCATCCGAATCATCAGGGAAAGCACTTGTAAGTGGAGAAGGTTCTTCAAAAAGCAAAGTTGGTGCAAAGCTGGATTCTGCTGCTGAGCAAGCTAGTAACCGTCCACGGACAGCTGCAGAGATGCAAAGACAGAAGCTGAAGAAACTGATGGATGAGTTAAATGAAGAGGGCGATGGGCGCTCTGCCCCTATTGTCAAGCTAGGAGATGCATCCATGGCATCACCATTCACCGCAAAGCATGCTTCTGTTGCCCCTACTACGGACATTATTCGCCAAGGTCGAAGTACTCTAGTGACAACTCTCCAGATGTTTAAAATACTTGGTCTCAACTGCCTCGCTACTGCCTATGTACTGAGTGTTATGTACTTGGATGGAGTAAAGCTTGGCGATATTCAAGCGACTATCAGTGGAGTATTCACAGCAGCCTTTTTTTTGTTCATCTCACATGCGCGCCCTCTTCCGACACTCTCAGCTGAACGGCCCCATCCACACGTCTTTTGCTCTTATGTTCTCCTTTCTCTTCTAGGCCAATTTGCAATCCACTTACTTTTCTTGATTTCTTCGGTGAAAGAAGCAGAAAAGCACATGCCTGATGAATGTATAGAGCCAGACTCAGATTTTCATCCCAACTTGGTTAACACGGTTTCGTACATGGTAAGCATGATGCTTCAGGTGGCTACCTTTGCTGTAAACTATATGGGTCATCCCTTCAACCAGAGTGTATCTGAAAACAAACCATTCTTATACGCCCTCTTGGCTGCGGTCGGTTTCTTCACTGTTATTACCTCCGATTTGTTTAGAGATCTGAATGACTGGCTGAAGTTGGTTCCATTGCCTTTGGGATTGAGGGACAAGCTTCTGGCTTGGGCACTTCTTATGTTCTTGTGCTGTTATGCTTGGGAAAGACTGTTGAGATGGGTGTTCCCAGGTAAAATCCCGGCGTGGCGGAAGCGACAACGATTGGTAGCGGCTAATCTGGAGAAGAAGAAACAACTCTGA | 2184 | 45.01 | MDDETSKKEEESSRNEEGSKPPNDSSKRTIDLTGETRSREVYSPSTYPSKSKYPSHLPQHIEQTRKEKEAKPEYLSLRGSGNAVQIVQRHHFASHLKRMAVVVRLQEEFFAFVKGAPETIQERLTDIPSFYVETYKKFTRQGSRVLALAYKSLPDMTVSEARGLDRDLVESDLTFAGFAVFNCPIRADSATILSELKGSSHDLVFSIQPNYCPFIVTNRKYLLEAAVYSVMITGDQALTACHVASQVHITSKQILILNSKKGTEEYEWLSPDELQTVPYREKEVGNLSETYDLCIGGDCIGMLQRTSTVLDVIPYIKVFARVAPEQKELILTTFKTVGRMTLMCGDGTNDVGALKQAHVGIALLNAVPPPQSGNSSSEASKDEAVRSAKSKKSKPSSESSGKALVSGEGSSKSKVGAKLDSAAEQASNRPRTAAEMQRQKLKKLMDELNEEGDGRSAPIVKLGDASMASPFTAKHASVAPTTDIIRQGRSTLVTTLQMFKILGLNCLATAYVLSVMYLDGVKLGDIQATISGVFTAAFFLFISHARPLPTLSAERPHPHVFCSYVLLSLLGQFAIHLLFLISSVKEAEKHMPDECIEPDSDFHPNLVNTVSYMVSMMLQVATFAVNYMGHPFNQSVSENKPFLYALLAAVGFFTVITSDLFRDLNDWLKLVPLPLGLRDKLLAWALLMFLCCYAWERLLRWVFPGKIPAWRKRQRLVAANLEKKKQL | 727 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 45548640 | 45554706 | - | Maker00003676 | Lcy4g1925 | 631451 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy4g1925 | 727 | MobiDBLite | consensus disorder prediction | 365 | 438 | - | - | |
Lcy4g1925 | 727 | MobiDBLite | consensus disorder prediction | 36 | 58 | - | - | |
Lcy4g1925 | 727 | SUPERFAMILY | Metal cation-transporting ATPase, ATP-binding domain N | 82 | 187 | IPR023299 | GO:0000166(InterPro) | |
Lcy4g1925 | 727 | Gene3D | - | 60 | 184 | IPR023299 | GO:0000166(InterPro) | |
Lcy4g1925 | 727 | MobiDBLite | consensus disorder prediction | 1 | 71 | - | - | |
Lcy4g1925 | 727 | Gene3D | - | 218 | 385 | IPR023214 | - | |
Lcy4g1925 | 727 | NCBIfam | HAD-IC family P-type ATPase | 311 | 363 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
Lcy4g1925 | 727 | SUPERFAMILY | Calcium ATPase, transmembrane domain M | 488 | 704 | IPR023298 | - | |
Lcy4g1925 | 727 | PANTHER | CATION-TRANSPORTING ATPASE-RELATED | 222 | 709 | IPR006544 | GO:0006874(PANTHER)|GO:0015662(PANTHER)|GO:0016020(InterPro)|GO:0016020(PANTHER)|GO:0019829(PANTHER)|GO:0030176(PANTHER)|GO:0055085(PANTHER)|GO:0140358(InterPro) | |
Lcy4g1925 | 727 | PRINTS | P-type cation-transporting ATPase superfamily signature | 344 | 363 | - | - | |
Lcy4g1925 | 727 | PRINTS | P-type cation-transporting ATPase superfamily signature | 225 | 235 | - | - | |
Lcy4g1925 | 727 | SUPERFAMILY | HAD-like | 219 | 368 | IPR036412 | - | |
Lcy4g1925 | 727 | ProSitePatterns | Hypothetical cof family signature 2. | 344 | 366 | - | - | |
Lcy4g1925 | 727 | Coils | Coil | 431 | 451 | - | - | |
Lcy4g1925 | 727 | MobiDBLite | consensus disorder prediction | 382 | 396 | - | - | |
Lcy4g1925 | 727 | Pfam | Cation transport ATPase (P-type) | 83 | 127 | - | - | |
Lcy4g1925 | 727 | MobiDBLite | consensus disorder prediction | 1 | 35 | - | - |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lcy4g1925 | K14950 | - | csv:101215828 | 1154.43 |