Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy4g1925 ATGGACGATGAAACCTCAAAGAAGGAGGAAGAGAGCTCTCGGAATGAGGAAGGATCGAAGCCGCCAAATGATTCCTCAAAGAGGACAATTGATTTAACTGGAGAGACAAGGAGTAGAGAGGTCTATTCCCCAAGCACTTATCCTTCCAAAAGTAAGTATCCCTCCCATCTCCCACAACACATTGAACAAACTAGAAAAGAAAAGGAAGCTAAACCCGAATACCTTTCCTTGAGGGGAAGTGGAAACGCTGTCCAGATTGTTCAGAGGCACCACTTTGCTTCACATTTGAAGAGAATGGCAGTTGTTGTGCGCCTTCAAGAGGAATTTTTTGCATTTGTGAAGGGTGCCCCCGAAACCATCCAGGAGAGGCTCACTGATATACCTTCATTTTATGTTGAGACGTATAAGAAATTTACACGACAAGGTTCCCGTGTCCTTGCTCTTGCTTACAAATCACTTCCAGACATGACAGTTAGTGAAGCTAGAGGCCTGGATAGGGACTTGGTGGAGAGTGACCTTACATTTGCTGGTTTTGCGGTGTTTAATTGTCCAATTAGAGCAGATTCGGCTACAATATTATCTGAGCTTAAAGGATCATCGCATGACCTGGTATTCTCTATTCAGCCTAATTATTGCCCCTTCATTGTGACTAATAGAAAATACTTATTGGAGGCTGCTGTCTACTCGGTCATGATTACTGGTGACCAAGCTTTGACAGCATGCCACGTAGCTAGCCAAGTTCACATTACCTCGAAGCAGATTTTAATTCTCAATTCAAAGAAGGGAACTGAGGAATATGAATGGCTCTCCCCAGATGAGTTACAGACAGTTCCATACAGAGAAAAAGAGGTGGGAAATTTATCGGAGACATATGATCTATGTATTGGAGGTGACTGCATTGGAATGCTACAACGCACCTCCACCGTGCTGGATGTTATTCCATACATTAAGGTTTTTGCAAGAGTTGCTCCAGAGCAGAAAGAACTCATATTGACCACATTCAAAACAGTTGGAAGAATGACGTTGATGTGTGGGGATGGAACAAACGATGTTGGAGCTTTGAAGCAGGCCCATGTTGGAATTGCCCTCCTAAACGCAGTCCCTCCTCCTCAAAGTGGTAATTCTTCCTCAGAGGCATCTAAAGATGAGGCAGTGCGGTCTGCAAAGTCAAAGAAATCTAAGCCCTCATCCGAATCATCAGGGAAAGCACTTGTAAGTGGAGAAGGTTCTTCAAAAAGCAAAGTTGGTGCAAAGCTGGATTCTGCTGCTGAGCAAGCTAGTAACCGTCCACGGACAGCTGCAGAGATGCAAAGACAGAAGCTGAAGAAACTGATGGATGAGTTAAATGAAGAGGGCGATGGGCGCTCTGCCCCTATTGTCAAGCTAGGAGATGCATCCATGGCATCACCATTCACCGCAAAGCATGCTTCTGTTGCCCCTACTACGGACATTATTCGCCAAGGTCGAAGTACTCTAGTGACAACTCTCCAGATGTTTAAAATACTTGGTCTCAACTGCCTCGCTACTGCCTATGTACTGAGTGTTATGTACTTGGATGGAGTAAAGCTTGGCGATATTCAAGCGACTATCAGTGGAGTATTCACAGCAGCCTTTTTTTTGTTCATCTCACATGCGCGCCCTCTTCCGACACTCTCAGCTGAACGGCCCCATCCACACGTCTTTTGCTCTTATGTTCTCCTTTCTCTTCTAGGCCAATTTGCAATCCACTTACTTTTCTTGATTTCTTCGGTGAAAGAAGCAGAAAAGCACATGCCTGATGAATGTATAGAGCCAGACTCAGATTTTCATCCCAACTTGGTTAACACGGTTTCGTACATGGTAAGCATGATGCTTCAGGTGGCTACCTTTGCTGTAAACTATATGGGTCATCCCTTCAACCAGAGTGTATCTGAAAACAAACCATTCTTATACGCCCTCTTGGCTGCGGTCGGTTTCTTCACTGTTATTACCTCCGATTTGTTTAGAGATCTGAATGACTGGCTGAAGTTGGTTCCATTGCCTTTGGGATTGAGGGACAAGCTTCTGGCTTGGGCACTTCTTATGTTCTTGTGCTGTTATGCTTGGGAAAGACTGTTGAGATGGGTGTTCCCAGGTAAAATCCCGGCGTGGCGGAAGCGACAACGATTGGTAGCGGCTAATCTGGAGAAGAAGAAACAACTCTGA 2184 45.01 MDDETSKKEEESSRNEEGSKPPNDSSKRTIDLTGETRSREVYSPSTYPSKSKYPSHLPQHIEQTRKEKEAKPEYLSLRGSGNAVQIVQRHHFASHLKRMAVVVRLQEEFFAFVKGAPETIQERLTDIPSFYVETYKKFTRQGSRVLALAYKSLPDMTVSEARGLDRDLVESDLTFAGFAVFNCPIRADSATILSELKGSSHDLVFSIQPNYCPFIVTNRKYLLEAAVYSVMITGDQALTACHVASQVHITSKQILILNSKKGTEEYEWLSPDELQTVPYREKEVGNLSETYDLCIGGDCIGMLQRTSTVLDVIPYIKVFARVAPEQKELILTTFKTVGRMTLMCGDGTNDVGALKQAHVGIALLNAVPPPQSGNSSSEASKDEAVRSAKSKKSKPSSESSGKALVSGEGSSKSKVGAKLDSAAEQASNRPRTAAEMQRQKLKKLMDELNEEGDGRSAPIVKLGDASMASPFTAKHASVAPTTDIIRQGRSTLVTTLQMFKILGLNCLATAYVLSVMYLDGVKLGDIQATISGVFTAAFFLFISHARPLPTLSAERPHPHVFCSYVLLSLLGQFAIHLLFLISSVKEAEKHMPDECIEPDSDFHPNLVNTVSYMVSMMLQVATFAVNYMGHPFNQSVSENKPFLYALLAAVGFFTVITSDLFRDLNDWLKLVPLPLGLRDKLLAWALLMFLCCYAWERLLRWVFPGKIPAWRKRQRLVAANLEKKKQL 727
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
4 45548640 45554706 - Maker00003676 Lcy4g1925 631451
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lcy4g1925 727 MobiDBLite consensus disorder prediction 365 438 - -
Lcy4g1925 727 MobiDBLite consensus disorder prediction 36 58 - -
Lcy4g1925 727 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 82 187 IPR023299 GO:0000166(InterPro)
Lcy4g1925 727 Gene3D - 60 184 IPR023299 GO:0000166(InterPro)
Lcy4g1925 727 MobiDBLite consensus disorder prediction 1 71 - -
Lcy4g1925 727 Gene3D - 218 385 IPR023214 -
Lcy4g1925 727 NCBIfam HAD-IC family P-type ATPase 311 363 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Lcy4g1925 727 SUPERFAMILY Calcium ATPase, transmembrane domain M 488 704 IPR023298 -
Lcy4g1925 727 PANTHER CATION-TRANSPORTING ATPASE-RELATED 222 709 IPR006544 GO:0006874(PANTHER)|GO:0015662(PANTHER)|GO:0016020(InterPro)|GO:0016020(PANTHER)|GO:0019829(PANTHER)|GO:0030176(PANTHER)|GO:0055085(PANTHER)|GO:0140358(InterPro)
Lcy4g1925 727 PRINTS P-type cation-transporting ATPase superfamily signature 344 363 - -
Lcy4g1925 727 PRINTS P-type cation-transporting ATPase superfamily signature 225 235 - -
Lcy4g1925 727 SUPERFAMILY HAD-like 219 368 IPR036412 -
Lcy4g1925 727 ProSitePatterns Hypothetical cof family signature 2. 344 366 - -
Lcy4g1925 727 Coils Coil 431 451 - -
Lcy4g1925 727 MobiDBLite consensus disorder prediction 382 396 - -
Lcy4g1925 727 Pfam Cation transport ATPase (P-type) 83 127 - -
Lcy4g1925 727 MobiDBLite consensus disorder prediction 1 35 - -
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy4g1925 K14950 - csv:101215828 1154.43