Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy4g1934 ATGGTTGCTCAGAGAAAGGGAGCATCGCGGGTTTCCGAGGACCCCGAGGAGCTGGCAAGAGTTTCGTTGCAGGCTGTTCTTCTTGCCGACAGCTTTACCACTAAGTTTCGCCCCATAACGCTTGAACGCCCAAAGGTATTATTGCCGCTGGTAAACGTCCCGATGATTAATTATACTTTATCTTGGCTCGAATCGGCTGGTGTCGAAGAGGTGTTTGTTTTTTGCTGTGCTAATTCAAAGCAAGTAATTGATTATTTGGAGAACTCTGAGTGGGTATCCCTACCAGACTTTGCAGTCACAACCATAGAGTCGCACAACTCCATCAGTGCTGGAGACGCCTTGCGTTTAATCTATGAAAGAAATGTGGTGTCTTATAATGCCTCTAAATTTCCCCTTTTGAAGATACATGGTGATTTTGTACTTATCACTGGAGACACCATAAGCAACATGTCACTTACGCAAGCTCTTCAAGAACACAAAGAGAGAAAGAAGAAAGATAGTAATGCTGTAATGACCATGGTTGTCAAACGGTCAAAGCCTTCTCCAATCACACACCAATCTCGGCTTGGCACTGATGAGCTGTTTATGGCAATTGATCATAATACTAAGCAGCTCTTGTACTATGAGGATAAGGCTGACAATTCAAAAGGAATAATACATCTTGACAAGACATTGCTAATGGATAATCCTTCCATATCAGTTCATAACGACATGCAGGATTGTTACATAGACATATGCTCCCCAGAAGTACTCAGCCTGTTTACTGACAATTTTGACTACCAACATCTACGTCGTCATTTTGTCAAGGGATTGCTCTTAGATGATATCATGGGTTACAAGATTTACACACACGAAATTTGCTCAAGCTATGCAGCTAGAATTGATAATTATCGAAGCTATGACACTGTTAGTAAGGACATAATACAGAGGTGGACATATCCGCTGGTACCAGACGTTAAATTCTTTGGGAATTCTGCTTATAAACTTGAAAGGCAGGGAATGTATAGAGCATCAGGGTCAAGCGGTTGTCCCGCACGTTCTGCACAGGTTGGTCCATTTACTGTTATTGGAGATAACAGCACAATTGGCGGCAACACCAAAATTACAAATTCAATTATTGGGCAAGGTTGTAGCATTGGATCGAATGTTACAATTGAAGGCTCTTATATATGGGACAATGTCACTATTGAAGATGGCTGTAAACTTAGTCATGCTATCGTATGTGATGGAGTGATTATAAAGTCCGGAGCTGAACTGGAACCTGGTGTAATTTTGTCTTTCAAGCTGTTTAATACTCAGTTGTCCTTGATCCTGGATTGTGCTATCCACTTTTACCTTTTGTATGTCCTTATCTTTTCCCCTTTCTCTAATAAATAG 1377 41.25 MVAQRKGASRVSEDPEELARVSLQAVLLADSFTTKFRPITLERPKVLLPLVNVPMINYTLSWLESAGVEEVFVFCCANSKQVIDYLENSEWVSLPDFAVTTIESHNSISAGDALRLIYERNVVSYNASKFPLLKIHGDFVLITGDTISNMSLTQALQEHKERKKKDSNAVMTMVVKRSKPSPITHQSRLGTDELFMAIDHNTKQLLYYEDKADNSKGIIHLDKTLLMDNPSISVHNDMQDCYIDICSPEVLSLFTDNFDYQHLRRHFVKGLLLDDIMGYKIYTHEICSSYAARIDNYRSYDTVSKDIIQRWTYPLVPDVKFFGNSAYKLERQGMYRASGSSGCPARSAQVGPFTVIGDNSTIGGNTKITNSIIGQGCSIGSNVTIEGSYIWDNVTIEDGCKLSHAIVCDGVIIKSGAELEPGVILSFKLFNTQLSLILDCAIHFYLLYVLIFSPFSNK 458
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 45664117 45671279 + Maker00003719 Lcy4g1934 631460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy4g1934 458 Gene3D Hexapeptide repeat proteins 342 430 - -
Lcy4g1934 458 PANTHER TRANSLATION INITIATION FACTOR EIF-2B SUBUNIT EPSILON 10 428 IPR051956 GO:0003743(PANTHER)|GO:0005085(PANTHER)|GO:0005851(PANTHER)|GO:0031369(PANTHER)
Lcy4g1934 458 Pfam Nucleotidyl transferase 25 180 IPR005835 GO:0009058(InterPro)
Lcy4g1934 458 Pfam Bacterial transferase hexapeptide (six repeats) 354 387 IPR001451 -
Lcy4g1934 458 SUPERFAMILY Nucleotide-diphospho-sugar transferases 22 383 IPR029044 -
Lcy4g1934 458 CDD LbH_eIF2B_epsilon 355 427 - -
Lcy4g1934 458 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 11 315 IPR029044 -
Lcy4g1934 458 SUPERFAMILY Trimeric LpxA-like enzymes 279 425 IPR011004 -
Lcy4g1934 458 CDD eIF-2B_epsilon_N 23 251 IPR035543 -
Lcy4g1934 458 FunFam Translation initiation factor eIF-2B subunit epsilon 12 315 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy4g1934 K03240 - csv:101217025 768.074