Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy4g1937 ATGGGATGTATAAGTAGCCGAGAGGTAGCTTCCAGAAACTTAGCAGATTCAGAGGATAAGAAGGAGAAGAATTCTGAATGTGGTGATGATTTGGAAAGGAAGGAATCTGATGTGGCTGTTGTTGATGTTACTCAGAAGGAAGGGCATGGCCATGGGGCTCAGCCTTTGACAAAAGAGCAGAGAAGAAAGTCGAAACCTAACCCCAGATTGAGTAATTTGCCAAAGCAATCACAGGGGGAGCAGGTGGCGGCTGGATGGCCTTCTTGGCTCACAGCAGTTTGTGGGGAGGCACTCAGTGGCTGGGTTCCGAGGAAGGCTGATACATTTGAGAAGATTGATAAGATTGGACAAGGAACATACAGTAATGTGTACAAAGCAAAAGATATATTGACCGGTAAAGTTGTTGCGCTGAAGAAGGTTCGATTTGACAATTTAGAGCCAGAAAGTGTAAGATTTATGGCCAGAGAGATCCTCATTTTGCGACGCCTTGATCATCCTAATGTTGTAAAGTTAGAGGGTTTGGTTACATCAAGGATGTCATGTAGTTTGTACCTTGTGTTTGAGTACATGGAGCATGATTTAGCTGGACTTGCTGCAAATCCATCCATCAAATTTACAGAGCCTCAGGTTAAGTGTTTCATGCAACAACTGTTATCAGGACTCGAGCATTGTCACAGCCATAGGGTGCTTCATCGTGATATTAAGGGTTCAAATCTTCTTATTGATGGTGGAGGGATGCTTAAGATTGCTGACTTTGGACTAGCTACTTTCTTTGATCCAAAGCACAAGCACCCATTGACTAATCGTGTTGTTACCTTATGGTATCGATCTCCTGAGCTTCTACTAGGTGCAACTCACTATGGTGTAGGCATCGACCTTTGGAGTGCAGGTTGTATTTTAGCAGAGTTATTAGCTGGGCGGCCCATAATGCCTGGCCGTACAGAGGGCCATGGGCAGGTTGAGCAATTACATAAGATATTCAAGCTATGTGGCTCACCTTCAGATGAATATTTGAAGAGAGCAAAGTTGCCCAATGCAGCTTTATTTAGGCCCCGAGAACCTTATAAGAGATGTATAAAAGAGACTTTTCAAGATTTCCCACCATCGTCATTTCCTCTTATAGATACGCTTCTTGCAATTGATCCTGCTGAGAGAATGACAGCTACAGATGCATTAAAGAGCGAGTTCTTCACTACAGAACCTTATGCATGCGAACCTTCCAGCCTCCCCAAATATCCACCCAGTAAGGAGATGGATGCTAAACGGCGAGATGACGAAGCGCGAAGGTATCCAGAGTGTGGGTCTGCTCATATGTGCATTTCTATGTTCTTTAATGTGACTTGTGCCCATTATGTTAAGCATCAATTCATATGGTTGTACAGACAAAAAGCAGCAAGTAAATTGCAGAATGATCGTGTGAAGAAGACGCGCACACGTAACCGTGCTGGTAGGACCATTCCTATTCAAGGAGCCAATGCAGAACTTCAATCAAATATTGATGTACGTTTATTTACATTTGTTCTATTTGGCATTGTATATTTTGCATTTCTTTTGGGAAATGGTCATCATTGCAGGCTTGATGTCACGAAGAGACGGCGTTTAATTACTCACGCAAATGCAAAGAGCAAGAGCGAAAAGTTTCCCCCTCCGCATCAGGATGGCGCACTCGGATTCACATTGGGATACTCACGTCATATTGATCCAGCTGTTGTTCCTTCTGATGTTCCATTTAGTTCCACCTCGTTCGGCTATCCAAACGAATTCGACCGAGCCTGGTCCGGTCCATTGGTTGAGTCTTCTGACATTGGTGCTCAGAGGCAGAAGCATTTGGGAGGTGATGCAAGAGAGCAACAATCAAACCAATCTTCAGTTAAAGGAAAAAAGGCAGCATGA 1893 43.9 MGCISSREVASRNLADSEDKKEKNSECGDDLERKESDVAVVDVTQKEGHGHGAQPLTKEQRRKSKPNPRLSNLPKQSQGEQVAAGWPSWLTAVCGEALSGWVPRKADTFEKIDKIGQGTYSNVYKAKDILTGKVVALKKVRFDNLEPESVRFMAREILILRRLDHPNVVKLEGLVTSRMSCSLYLVFEYMEHDLAGLAANPSIKFTEPQVKCFMQQLLSGLEHCHSHRVLHRDIKGSNLLIDGGGMLKIADFGLATFFDPKHKHPLTNRVVTLWYRSPELLLGATHYGVGIDLWSAGCILAELLAGRPIMPGRTEGHGQVEQLHKIFKLCGSPSDEYLKRAKLPNAALFRPREPYKRCIKETFQDFPPSSFPLIDTLLAIDPAERMTATDALKSEFFTTEPYACEPSSLPKYPPSKEMDAKRRDDEARRYPECGSAHMCISMFFNVTCAHYVKHQFIWLYRQKAASKLQNDRVKKTRTRNRAGRTIPIQGANAELQSNIDVRLFTFVLFGIVYFAFLLGNGHHCRLDVTKRRRLITHANAKSKSEKFPPPHQDGALGFTLGYSRHIDPAVVPSDVPFSSTSFGYPNEFDRAWSGPLVESSDIGAQRQKHLGGDAREQQSNQSSVKGKKAA 630
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 45705740 45711709 - Maker00003584 Lcy4g1937 631463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy4g1937 630 MobiDBLite consensus disorder prediction 67 81 - -
Lcy4g1937 630 MobiDBLite consensus disorder prediction 12 44 - -
Lcy4g1937 630 Gene3D Transferase(Phosphotransferase) domain 1 192 434 - -
Lcy4g1937 630 ProSitePatterns Serine/Threonine protein kinases active-site signature. 229 241 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy4g1937 630 ProSitePatterns Protein kinases ATP-binding region signature. 115 138 IPR017441 GO:0005524(InterPro)
Lcy4g1937 630 MobiDBLite consensus disorder prediction 1 81 - -
Lcy4g1937 630 ProSiteProfiles Protein kinase domain profile. 109 397 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy4g1937 630 MobiDBLite consensus disorder prediction 614 630 - -
Lcy4g1937 630 MobiDBLite consensus disorder prediction 603 630 - -
Lcy4g1937 630 SMART serkin_6 109 397 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy4g1937 630 CDD STKc_CDK9_like 109 397 - -
Lcy4g1937 630 MobiDBLite consensus disorder prediction 52 66 - -
Lcy4g1937 630 FunFam probable serine/threonine-protein kinase At1g54610 96 191 - -
Lcy4g1937 630 Gene3D Phosphorylase Kinase; domain 1 96 191 - -
Lcy4g1937 630 FunFam probable serine/threonine-protein kinase At1g54610 192 437 - -
Lcy4g1937 630 Pfam Protein kinase domain 109 397 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy4g1937 630 SUPERFAMILY Protein kinase-like (PK-like) 103 402 IPR011009 -
Lcy4g1937 630 PANTHER CELL DIVISION PROTEIN KINASE 108 397 IPR050108 GO:0000307(PANTHER)|GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0006468(PANTHER)|GO:0008353(PANTHER)|GO:0032968(PANTHER)|GO:0070816(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g1454 Lcy-Chr11:38437990 Lcy4g1937 Lcy-Chr4:45705740 1.30E-261 dispersed
Lcy4g1937 Lcy-Chr4:45705740 Lcy5g2098 Lcy-Chr5:44056799 1.01E-214 dispersed
Lcy7g1666 Lcy-Chr7:32940093 Lcy4g1937 Lcy-Chr4:45705740 2.86E-15 dispersed
Lcy13g0258 Lcy-Chr13:2705695 Lcy4g1937 Lcy-Chr4:45705740 1.81E-23 wgd
Lcy2g1834 Lcy-Chr2:31184311 Lcy4g1937 Lcy-Chr4:45705740 3.18E-285 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65875 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy4g1937 K08819 - csv:101217497 1036.94