Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy4g1952 ATGGATGATCTCTCAGATCTTGAGCCTGATTGCTCTGAATTTGTTGAAGTTGATCCCACTGGCAGATATGGCAGATACAATGAAATTTTGGGAAAAGGAGCTTCAAAAACAGTTTACAGAGCATTTGATGAGTATGAAGGAATTGAGGTCGCTTGGAATCAAGTGAAACTCTATGATTTCTTGCAAAGTCCTGAAGATCTGGAAAGACTTTACTGTGAGATTCATCTTTTGAAGACATTGAAGCACAGAAATATTATGAAATTCTACACTTCTTGGGTTGATATTGCCAATAGAAACATCAATTTTGTTACTGAAATGTTCACTTCTGGCACTCTTAGACAGTATAGGCTGAAGCATAAGAGAGTTAATATTAGGGCAGTGAAGCATTGGTGCAGGCAGATTTTGAGGGGGCTTCATTATTTGCATAGCCATGAGCCTCCTGTAATCCATAGAGATCTCAAGTGTGACAATATCTTTGTTAATGGGAATCAAGGGGAAGTTAAGATTGGTGATCTTGGACTTGCAGCAATCCTCAGGAAATCTCATGCTGATCACTGTGTGGGTATGGTTTCTCATGCTGATCTATGTCCTTTTGAAAACTCTATTTGTTGGATTTGTATAGCCCGAGAGCGTGAAGCCGAGTTATGTGGGTTTGCTTATCTCAAACTACAGTGTTATGAATTCACAGGGACACCAGAGTTCATGGCTCCAGAAGTGTATGCAGAGGCATATAACGAGTTAGTTGATATTTACTCATTTGGAATGTGCATTCTGGAGATGATAACTTTCGAATATCCATACAGCGAATGCACTCATCCCGCTCAGATCTACAAGAAAGTCGTATCCGGGAAAAAACCAGATGCCTTGTACAAAGTGAAGGATCCCGAAGTGCGGCAGTTCATCGACAAGTGTTTGGCGACGGTTTCATTTAGGCTCTCGGCAGCAGAGCTTTTGAGTGACCCTTTTCTTCAAATTGATAATGGTGAATATGATCTAAGACCTGTCGATTACGGGAGAGGATTGGACGACGTTTGCCCTCTTATAAGACAGCCGTATCTAGAACTTCATAGAAGTGACAGCTCTTTCTGTAATGGATATCCATATGATTATAGTTTTGAAGCTTCAAGTGAATCAGGTTATCATCCAATTGATCATGAAACCAATGGAATTGAACTTTTTGAGTATTGTGAAGGTGAACATTCTGAAGATGTAGATATTAGCATTAAAGGGAAGATGAGAGAAGGTGGTGCCATCTTCTTAAGACTCAGAATTGCAGATAAAGAAGGGCGTATTAGGAACATCTATTTCCCATTTGATGTCGAGACGGATACAGCATTAAGTGTTGCAACAGAAATGGTTGCAGAGCTAGATATTACAGATCAAGACGTGACTAGAATTGCAGACATGATCGACGGAGAAATCGCTTCCTTGGTGCCTGATTGGAGGCCGGGTCCAGGAATTGAGGAAACGCCACGCTTTGCAAATCAAAGCTATTGTCATAATTGTGCGACTACTCCTTACAACAATGCTTCAAATGGTCATTTGTTTAGAAATCCTGATGGAAAGAACTCAGAGGTTCCTCTATGCTGTGGACATCGATATGCGTCAATGCACGGTCGTTTTGAGGAGATAATGTATCAAGCTGACGAGTCCGAGCATCATCCAACAGAGGGTGCACCAAATGTGTCGAGCCATTCGGATTGCCTGAATTATCCTGAAATATGGGGACACCATGAAAGCCGTGAACTTAGTTCAATGAGCTCAAGACAGAGCCATTCGGATGAAGATTACGAGAAAACAGATCGATCAGTTACAGTCCCGGACACGAAAGAAATGATAATGGAAAGTAAAACTGCTCCTAATACGAGAACAACGCTTAGGAGCCTAATGGATTCCCTTTCTTTCTCAGAAACCCCTTCATTATATGAACCTCCAGATATTTATGAGACTGATGTCCAGCAAGAAATGAGATGGATCAAGGCAAAATACCAAATAGAATTAAGCAAGCTCAGAGATCAACAGTTGAGCTTTTCGTCAAAATCTTCAAGTTATGAAGACAGACAACAAGAAATGGAAAATGGGACACGGCAAGGCAACCACAACCAAATCCTCAACAGGTCTGCTCGAGACACGAACCGAAGTAGTACCGATAGCCATGTTTATATCAATGATAGCAGTTGTAGTACAGACGCCGAAAGGGCCCGAAATCACAAGGCCATGGAGTCCCCTATTGTGGATAAAGTAGTCACTGCTAAAAATGCCTGCACTGGTTCATTTCTTCCAAGCTCTCTTCACAGAGCAATCTCTCTCCCAGTTGATGCTGTTCATATATAA 2334 41.47 MDDLSDLEPDCSEFVEVDPTGRYGRYNEILGKGASKTVYRAFDEYEGIEVAWNQVKLYDFLQSPEDLERLYCEIHLLKTLKHRNIMKFYTSWVDIANRNINFVTEMFTSGTLRQYRLKHKRVNIRAVKHWCRQILRGLHYLHSHEPPVIHRDLKCDNIFVNGNQGEVKIGDLGLAAILRKSHADHCVGMVSHADLCPFENSICWICIAREREAELCGFAYLKLQCYEFTGTPEFMAPEVYAEAYNELVDIYSFGMCILEMITFEYPYSECTHPAQIYKKVVSGKKPDALYKVKDPEVRQFIDKCLATVSFRLSAAELLSDPFLQIDNGEYDLRPVDYGRGLDDVCPLIRQPYLELHRSDSSFCNGYPYDYSFEASSESGYHPIDHETNGIELFEYCEGEHSEDVDISIKGKMREGGAIFLRLRIADKEGRIRNIYFPFDVETDTALSVATEMVAELDITDQDVTRIADMIDGEIASLVPDWRPGPGIEETPRFANQSYCHNCATTPYNNASNGHLFRNPDGKNSEVPLCCGHRYASMHGRFEEIMYQADESEHHPTEGAPNVSSHSDCLNYPEIWGHHESRELSSMSSRQSHSDEDYEKTDRSVTVPDTKEMIMESKTAPNTRTTLRSLMDSLSFSETPSLYEPPDIYETDVQQEMRWIKAKYQIELSKLRDQQLSFSSKSSSYEDRQQEMENGTRQGNHNQILNRSARDTNRSSTDSHVYINDSSCSTDAERARNHKAMESPIVDKVVTAKNACTGSFLPSSLHRAISLPVDAVHI 777
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 45859161 45863478 - Maker00003533 Lcy4g1952 631478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy4g1952 777 MobiDBLite consensus disorder prediction 581 604 - -
Lcy4g1952 777 MobiDBLite consensus disorder prediction 676 735 - -
Lcy4g1952 777 SMART serkin_6 24 323 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy4g1952 777 Pfam Oxidative-stress-responsive kinase 1 C-terminal domain 419 474 IPR024678 GO:0004674(InterPro)|GO:0005524(InterPro)
Lcy4g1952 777 SUPERFAMILY Protein kinase-like (PK-like) 27 324 IPR011009 -
Lcy4g1952 777 Gene3D - 416 482 - -
Lcy4g1952 777 ProSitePatterns Serine/Threonine protein kinases active-site signature. 148 160 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy4g1952 777 Gene3D Phosphorylase Kinase; domain 1 9 105 - -
Lcy4g1952 777 MobiDBLite consensus disorder prediction 694 729 - -
Lcy4g1952 777 FunFam Probable serine/threonine-protein kinase WNK1 9 105 - -
Lcy4g1952 777 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 13 674 IPR050588 GO:0004674(PANTHER)|GO:0005737(PANTHER)|GO:0006468(PANTHER)|GO:0035556(PANTHER)
Lcy4g1952 777 ProSiteProfiles Protein kinase domain profile. 24 323 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy4g1952 777 Gene3D Transferase(Phosphotransferase) domain 1 107 328 - -
Lcy4g1952 777 FunFam probable serine/threonine-protein kinase WNK9 416 500 - -
Lcy4g1952 777 CDD STKc_WNK 22 323 - -
Lcy4g1952 777 Pfam Protein kinase domain 27 188 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy4g1952 777 Pfam Protein kinase domain 225 323 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g1534 Lcy-Chr12:35161832 Lcy4g1952 Lcy-Chr4:45859161 4.14E-140 dispersed
Lcy4g1952 Lcy-Chr4:45859161 Lcy8g1692 Lcy-Chr8:43517851 3.28E-149 dispersed
Lcy1g1617 Lcy-Chr1:16471122 Lcy4g1952 Lcy-Chr4:45859161 1.22E-133 transposed
Lcy5g2185 Lcy-Chr5:44959053 Lcy4g1952 Lcy-Chr4:45859161 7.71E-148 transposed
Lcy13g0281 Lcy-Chr13:3072507 Lcy4g1952 Lcy-Chr4:45859161 2.33E-254 wgd
Lcy2g1808 Lcy-Chr2:29933277 Lcy4g1952 Lcy-Chr4:45859161 9.06E-221 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65876 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy4g1952 K08867 - csv:101219552 1298.88