Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lcy4g1966 | ATGGCATTGAAGTATCGAAAAAGCGATGAGATAGTTGAAGTTGATCGTGAAGAATGCTCGGCTACCATGAGAACTCACAAACGGCGATGGAGGAGGCTCTTCGCCGCCATTTATTTCACCAGAGTTCTTATTTCTATGTCGAGGAAAGTTGCTGTCCGTAAGTCCAGTGTACTTTTGCACTCGCTTTCATACGTTGTTGTTGATGTGCAGTCAAATGACAATGATAGCTGCGACGAGCGGCGGTGCATGGAAACTTTTTTGAACGTGGATCGAAAAATTCTAAGCCAGATGGCGAGAGAGAAGAATTATGAGTGTTTGGACCAATTTGGAGGCATCGATGGATTGGCAAATACTCTCAAGACTAATTCTCGTAGTGGAATTAGTGCAACTGAGGATGATTTAATTCTTAGAAAGAAAGCTTTCGGAACGAATACGTATTCGAAACTCCATGGTAGAAGCTTCATGAGTTTTGTGATCGAAGCATTTGAAGATACAACGATTATCATTCTTTTGATCTGTGCAGCGCTTTCTTTGGGATTTGGTATCAAACAACACGGCTGGGACGGCGGATGGTACGACGGCGGCAGCATTGTCGTCGCCATATTTCTGGTGGTCGTCGTCTCCGCCGCGAGCAACTTCAAGCAATCGAGACAGTTCGAGAAGCTTTCAAACGAGAGAGACGATATCAAAATCGAGGTCACCAGAGCCGATCGACGCAAACCGGTATCGATATTCGAACTCCTCGTCGGAGACATTGTGCATTTGAAGATCGGAGATCAGATTCCGGCCGATGGATTGCTTCTCGATGGACATTCGCTGAAGATCGACGAATCTCACATGACCGGAGAGAGCGAATGCGTCGAAGTAAATCGTGAAATTAATCCGTTTTTGCTATCGGGAACGAAAGTGAGCGATGGATTTGGCGTGATGATGATCACTTCTGTTGGAATGAACACAGCCTGGGGAGAGATGATGAGTTCAATTCGACGGGAAATTAATGAGGAAACTCCATTGCAAGCTCGTCTGAACAAGATGACCGCCATTATCGGGAAGCTAGGGCTGACGGTGGCCGTGCTGGTGCTTGTTGTTCTGCTGATTCGCTATTTCACAGGCAGCACCGGCGAGTTCAATAGAAGCAAGACGAGGTTTAATGATATAATGAACGCCGTTCTCGGCATGGTTGCGGCGGCTGTTACGATCGTCGTGGTGGCGATTCCGGAAGGTTTGCCTCTGGCTGTTACTTTAACTTTAGCTTACTCCATGAAGAAGATGATGGCGGACAATGCATTGGTAAGGAAACTCTCTGCTTGTGAAACCATGGGCTCTGCGACTACGATTTGTACGGATAAAACTGGTACTCTTACTTTGAATGAGATGAAAGTTACAGAGTTTTGGATTGGGGAAGATGAAATTATAGACACAGATTATTCCAATTCAGGGATTGGGAGTAAGGTTGTTGAATTACTCCACCAAGCAGTTGGATTGAATACAACTGGTAGTGTTCAAAAACTGCCTCTAGAAATATTCGGGAGTCCGACCGAGAAAGCGATACTTTCCTGGGCGGTATTCGACCTGGATTTGAACCTGGATGAACTGAAGAAACAACATGAGATAATCCAGGTAGAGACATTCAGTTCAGAGAAGAAGAGAAGCGGAGTTTTGACGAGACGACACGGCGAGAGGCTTATCCATACACATTGGAAAGGAGCAGCAGAGATGATCTTGGCAATGTGTTCATATTATTATGAGAAACAAGGAGCAGTTAGAGCTATTGATGGTGAAGCAAGAAGAAGATTGATTGGAATAATCACAACTATGGCAGAGAAGAGTCTCCGATGCATAGCCTTCGCCCACAAGTCGAGCGAAGACGAAGAACTCGATGAATCGAGCTTGACATTACTCGGGATAGTCGGTTTGAAGGATCCTTGCAGGCCAGGAGTTAGAGCAGCTGTAGAATCATGTAAAGCTGCAGGAGTGAACATCAAAATGGTGACAGGTGATAATCTGCACACAGCAACAGCCATAGCAATTGAGTGCGGAATACTAAACCTCGACGACGCTACGAACGACGAAGTTGTCGTCGAGGGCGTAAAGTTTAGAAGCTACACACCAGAGGAGAGGCTGGAAAAGATTGGGAACATCCGAGTGATGGCTAGATCTTCCCCATTTGACAAGCTTCTTATGGTACAATGCTTGAAGAATCAAGGCCATGTAGTGGCAGTCACAGGGGATGGAACAAATGATGCCCCTGCTCTTCATGAGGCAGACATTGGCCTTTCCATGGGGATTCAAGGAACTGAAGTGGCAAAGGAGAGCTCCGACATCGTCATCTTAGACGACAACTTTACGTCGGTCGTCACCGTTCTGAAATGGGGAAGATGTGTTTACAACAACATTCAAAAGTTCATTCAGTTTCAGCTCACTGTGAATGTTGCAGCACTCGTTGTAAACTTCGTCGCGGCTGTCTCATCCGGTAAAGTCCCCCTAACCGCGGTGCAGCTACTATGGGTGAATCTCATAATGGACACCATGGGAGCTTTAGCCTTGGCAACTGAGCTGCCCACGGACGATCTCATGACGAAAACGCCGGTCGGTCGATCGGAGCCTTTGGTGACGAAAGTCATGTGGAGGAACCTCATTGCTCAGGCTGTGTATCAGGTGACAGTCTTGCTGGTTTTGGAATTCAAAGGAACATCCATCTTCAATGTGAATGAAAAGGTTAAGAGCACACTCATCTTCAACACTTTTGTTCTATGCCAAATCTTCAATGAGTTCAATGCAAGGAAGCTGGAGAAGAAGAATATATTTGAAGGGCTACACAAAAGCAAGCTCTTTTTGGCAATAATTATGATAACCTTAGCTTTTCAAGTGGTAATGGTTGAGCTTCTGGGAAGGTTTGCCAATACAGAGAGGTTGAATTGGGGCCAGTGGGGTGCATGTGTTGGCATTGCAGCTTTGTCTTGGCCAATTGGATGGCTTTCTAAGTTAATACCAGTTTCTACCCCGTAA | 3009 | 45.86 | MALKYRKSDEIVEVDREECSATMRTHKRRWRRLFAAIYFTRVLISMSRKVAVRKSSVLLHSLSYVVVDVQSNDNDSCDERRCMETFLNVDRKILSQMAREKNYECLDQFGGIDGLANTLKTNSRSGISATEDDLILRKKAFGTNTYSKLHGRSFMSFVIEAFEDTTIIILLICAALSLGFGIKQHGWDGGWYDGGSIVVAIFLVVVVSAASNFKQSRQFEKLSNERDDIKIEVTRADRRKPVSIFELLVGDIVHLKIGDQIPADGLLLDGHSLKIDESHMTGESECVEVNREINPFLLSGTKVSDGFGVMMITSVGMNTAWGEMMSSIRREINEETPLQARLNKMTAIIGKLGLTVAVLVLVVLLIRYFTGSTGEFNRSKTRFNDIMNAVLGMVAAAVTIVVVAIPEGLPLAVTLTLAYSMKKMMADNALVRKLSACETMGSATTICTDKTGTLTLNEMKVTEFWIGEDEIIDTDYSNSGIGSKVVELLHQAVGLNTTGSVQKLPLEIFGSPTEKAILSWAVFDLDLNLDELKKQHEIIQVETFSSEKKRSGVLTRRHGERLIHTHWKGAAEMILAMCSYYYEKQGAVRAIDGEARRRLIGIITTMAEKSLRCIAFAHKSSEDEELDESSLTLLGIVGLKDPCRPGVRAAVESCKAAGVNIKMVTGDNLHTATAIAIECGILNLDDATNDEVVVEGVKFRSYTPEERLEKIGNIRVMARSSPFDKLLMVQCLKNQGHVVAVTGDGTNDAPALHEADIGLSMGIQGTEVAKESSDIVILDDNFTSVVTVLKWGRCVYNNIQKFIQFQLTVNVAALVVNFVAAVSSGKVPLTAVQLLWVNLIMDTMGALALATELPTDDLMTKTPVGRSEPLVTKVMWRNLIAQAVYQVTVLLVLEFKGTSIFNVNEKVKSTLIFNTFVLCQIFNEFNARKLEKKNIFEGLHKSKLFLAIIMITLAFQVVMVELLGRFANTERLNWGQWGACVGIAALSWPIGWLSKLIPVSTP | 1002 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 46044449 | 46047457 | - | Maker00003548 | Lcy4g1966 | 631492 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lcy4g1966 | 1002 | Pfam | haloacid dehalogenase-like hydrolase | 552 | 756 | - | - | |
| Lcy4g1966 | 1002 | SUPERFAMILY | HAD-like | 445 | 846 | IPR036412 | - | |
| Lcy4g1966 | 1002 | PANTHER | CATION TRANSPORTING ATPASE | 82 | 1000 | - | GO:0005388(PANTHER)|GO:0005887(PANTHER)|GO:0019829(PANTHER)|GO:0043231(PANTHER) | |
| Lcy4g1966 | 1002 | Coils | Coil | 219 | 239 | - | - | |
| Lcy4g1966 | 1002 | Pfam | Cation transporter/ATPase, N-terminus | 110 | 177 | IPR004014 | - | |
| Lcy4g1966 | 1002 | NCBIfam | calcium-translocating P-type ATPase, PMCA-type | 82 | 999 | IPR006408 | GO:0005388(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0070588(InterPro) | |
| Lcy4g1966 | 1002 | SUPERFAMILY | Calcium ATPase, transmembrane domain M | 109 | 999 | IPR023298 | - | |
| Lcy4g1966 | 1002 | ProSitePatterns | E1-E2 ATPases phosphorylation site. | 449 | 455 | IPR018303 | - | |
| Lcy4g1966 | 1002 | SUPERFAMILY | Metal cation-transporting ATPase, ATP-binding domain N | 453 | 647 | IPR023299 | GO:0000166(InterPro) | |
| Lcy4g1966 | 1002 | Gene3D | - | 136 | 329 | - | - | |
| Lcy4g1966 | 1002 | NCBIfam | HAD-IC family P-type ATPase | 391 | 471 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Lcy4g1966 | 1002 | NCBIfam | HAD-IC family P-type ATPase | 713 | 824 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Lcy4g1966 | 1002 | Pfam | E1-E2 ATPase | 230 | 425 | - | - | |
| Lcy4g1966 | 1002 | SUPERFAMILY | Calcium ATPase, transduction domain A | 231 | 327 | IPR008250 | - | |
| Lcy4g1966 | 1002 | FunFam | Calcium-transporting ATPase | 207 | 329 | - | - | |
| Lcy4g1966 | 1002 | Pfam | Cation transporting ATPase, C-terminus | 827 | 997 | IPR006068 | - | |
| Lcy4g1966 | 1002 | Gene3D | - | 457 | 642 | IPR023299 | GO:0000166(InterPro) | |
| Lcy4g1966 | 1002 | SFLD | p-type atpase | 428 | 795 | IPR044492 | - | |
| Lcy4g1966 | 1002 | PRINTS | H+-transporting ATPase (proton pump) signature | 742 | 758 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Lcy4g1966 | 1002 | PRINTS | H+-transporting ATPase (proton pump) signature | 599 | 617 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Lcy4g1966 | 1002 | PRINTS | H+-transporting ATPase (proton pump) signature | 774 | 799 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Lcy4g1966 | 1002 | FunFam | Calcium-transporting ATPase | 637 | 787 | - | - | |
| Lcy4g1966 | 1002 | Gene3D | - | 444 | 787 | IPR023214 | - | |
| Lcy4g1966 | 1002 | Gene3D | - | 160 | 994 | - | - | |
| Lcy4g1966 | 1002 | FunFam | Calcium-transporting ATPase | 759 | 1001 | - | - | |
| Lcy4g1966 | 1002 | SFLD | C1.7: P-type atpase like | 428 | 795 | - | - | |
| Lcy4g1966 | 1002 | PRINTS | P-type cation-transporting ATPase superfamily signature | 657 | 667 | - | - | |
| Lcy4g1966 | 1002 | PRINTS | P-type cation-transporting ATPase superfamily signature | 766 | 778 | - | - | |
| Lcy4g1966 | 1002 | PRINTS | P-type cation-transporting ATPase superfamily signature | 276 | 290 | - | - | |
| Lcy4g1966 | 1002 | PRINTS | P-type cation-transporting ATPase superfamily signature | 635 | 646 | - | - | |
| Lcy4g1966 | 1002 | PRINTS | P-type cation-transporting ATPase superfamily signature | 742 | 761 | - | - | |
| Lcy4g1966 | 1002 | PRINTS | P-type cation-transporting ATPase superfamily signature | 447 | 461 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lcy3g1566 | Lcy-Chr3:42718536 | Lcy4g1966 | Lcy-Chr4:46044449 | 0 | dispersed | |
| Lcy3g1568 | Lcy-Chr3:42739283 | Lcy4g1966 | Lcy-Chr4:46044449 | 0 | dispersed | |
| Lcy4g1594 | Lcy-Chr4:40186691 | Lcy4g1966 | Lcy-Chr4:46044449 | 6.48e-320 | dispersed | |
| Lcy4g1966 | Lcy-Chr4:46044449 | Lcy9g0731 | Lcy-Chr9:24866584 | 6.98E-17 | dispersed | |
| Lcy4g1966 | Lcy-Chr4:46044449 | Lcy9g2037 | Lcy-Chr9:45244753 | 9.77E-265 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lcy4g1966 | K01537 | - | csv:101218531 | 1558.89 |